ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baalp16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome... 109 4e-21
2gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, com... 109 4e-21
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 109 4e-21
4dbj|AK110983.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 4e-21
5gb|AC147120.2| Pan troglodytes BAC clone CH251-531L7 from Y, com... 42 0.76
6gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 42 0.76
7gb|AC163729.5| Pan troglodytes BAC clone CH251-1018P19 from chro... 42 0.76
8ref|XM_575459.1| PREDICTED: Rattus norvegicus similar to zinc fi... 40 3.0
9emb|AL929266.9| Zebrafish DNA sequence from clone CH211-67E16 in... 40 3.0
10dbj|AP001541.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 3.0
11dbj|AK113961.1| Ciona intestinalis cDNA, clone:cicl019b17, full ... 40 3.0
12emb|AL844172.8| Zebrafish DNA sequence from clone DKEY-223H12, c... 40 3.0 
>gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0001A07,
             complete sequence
          Length = 164898

 Score =  109 bits (55), Expect = 4e-21
 Identities = 125/147 (85%), Gaps = 1/147 (0%)
 Strand = Plus / Minus

                                                                         
Query: 72    tacccaaatgttgcaccaggagcaagcagtgtaccatatgtggaaccaagtgcaagcaac 131
             ||||||| |||| |||||| |||||||| |||||||||||||| | || |||||||||||
Sbjct: 20421 tacccaagtgttccaccag-agcaagcaatgtaccatatgtggcatcaggtgcaagcaac 20363

                                                                         
Query: 132   acagcagaagcccccttttccgatggtccaaactatgggcaacacaaggtttcaaccgcc 191
             |||||||||||| | |||||| ||||| |  ||||||||||  ||| | |||| ||||||
Sbjct: 20362 acagcagaagccgcattttccaatggtacccactatgggcagtacaggctttccaccgcc 20303

                                        
Query: 192   accaactatgctctccatgtaccctcc 218
              |||||| |||||  ||||||||||||
Sbjct: 20302 tccaactgtgctccacatgtaccctcc 20276
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>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence
          Length = 140234

 Score =  109 bits (55), Expect = 4e-21
 Identities = 125/147 (85%), Gaps = 1/147 (0%)
 Strand = Plus / Plus

                                                                         
Query: 72    tacccaaatgttgcaccaggagcaagcagtgtaccatatgtggaaccaagtgcaagcaac 131
             ||||||| |||| |||||| |||||||| |||||||||||||| | || |||||||||||
Sbjct: 41744 tacccaagtgttccaccag-agcaagcaatgtaccatatgtggcatcaggtgcaagcaac 41802

                                                                         
Query: 132   acagcagaagcccccttttccgatggtccaaactatgggcaacacaaggtttcaaccgcc 191
             |||||||||||| | |||||| ||||| |  ||||||||||  ||| | |||| ||||||
Sbjct: 41803 acagcagaagccgcattttccaatggtacccactatgggcagtacaggctttccaccgcc 41862

                                        
Query: 192   accaactatgctctccatgtaccctcc 218
              |||||| |||||  ||||||||||||
Sbjct: 41863 tccaactgtgctccacatgtaccctcc 41889
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  109 bits (55), Expect = 4e-21
 Identities = 125/147 (85%), Gaps = 1/147 (0%)
 Strand = Plus / Minus

                                                                           
Query: 72      tacccaaatgttgcaccaggagcaagcagtgtaccatatgtggaaccaagtgcaagcaac 131
               ||||||| |||| |||||| |||||||| |||||||||||||| | || |||||||||||
Sbjct: 2825810 tacccaagtgttccaccag-agcaagcaatgtaccatatgtggcatcaggtgcaagcaac 2825752

                                                                           
Query: 132     acagcagaagcccccttttccgatggtccaaactatgggcaacacaaggtttcaaccgcc 191
               |||||||||||| | |||||| ||||| |  ||||||||||  ||| | |||| ||||||
Sbjct: 2825751 acagcagaagccgcattttccaatggtacccactatgggcagtacaggctttccaccgcc 2825692

                                          
Query: 192     accaactatgctctccatgtaccctcc 218
                |||||| |||||  ||||||||||||
Sbjct: 2825691 tccaactgtgctccacatgtaccctcc 2825665
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>dbj|AK110983.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-C11, full
            insert sequence
          Length = 2392

 Score =  109 bits (55), Expect = 4e-21
 Identities = 125/147 (85%), Gaps = 1/147 (0%)
 Strand = Plus / Plus

                                                                        
Query: 72   tacccaaatgttgcaccaggagcaagcagtgtaccatatgtggaaccaagtgcaagcaac 131
            ||||||| |||| |||||| |||||||| |||||||||||||| | || |||||||||||
Sbjct: 1066 tacccaagtgttccaccag-agcaagcaatgtaccatatgtggcatcaggtgcaagcaac 1124

                                                                        
Query: 132  acagcagaagcccccttttccgatggtccaaactatgggcaacacaaggtttcaaccgcc 191
            |||||||||||| | |||||| ||||| |  ||||||||||  ||| | |||| ||||||
Sbjct: 1125 acagcagaagccgcattttccaatggtacccactatgggcagtacaggctttccaccgcc 1184

                                       
Query: 192  accaactatgctctccatgtaccctcc 218
             |||||| |||||  ||||||||||||
Sbjct: 1185 tccaactgtgctccacatgtaccctcc 1211
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>gb|AC147120.2| Pan troglodytes BAC clone CH251-531L7 from Y, complete sequence
          Length = 175034

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 25    ctaaaccatatgtgtcatttt 45
             |||||||||||||||||||||
Sbjct: 93124 ctaaaccatatgtgtcatttt 93144
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 25       ctaaaccatatgtgtcatttt 45
                |||||||||||||||||||||
Sbjct: 12612201 ctaaaccatatgtgtcatttt 12612221



 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 25      ctaaaccatatgtgtcatttt 45
               |||||||||||||||||||||
Sbjct: 1631179 ctaaaccatatgtgtcatttt 1631159
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>gb|AC163729.5| Pan troglodytes BAC clone CH251-1018P19 from chromosome y, complete
             sequence
          Length = 196073

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 25    ctaaaccatatgtgtcatttt 45
             |||||||||||||||||||||
Sbjct: 69556 ctaaaccatatgtgtcatttt 69576
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>ref|XM_575459.1| PREDICTED: Rattus norvegicus similar to zinc finger protein 398
           (LOC500108), mRNA
          Length = 2764

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 215 ctcctccacctagaaggcag 234
           ||||||||||||||||||||
Sbjct: 204 ctcctccacctagaaggcag 223
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>emb|AL929266.9| Zebrafish DNA sequence from clone CH211-67E16 in linkage group 9,
              complete sequence
          Length = 199104

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 19     cttatcctaaaccatatgtgtcat 42
              ||||||||||||||||| ||||||
Sbjct: 122046 cttatcctaaaccatatctgtcat 122069
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>dbj|AP001541.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-683O4, complete
              sequence
          Length = 212884

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 208    atgtaccctcctccacctagaaggcagt 235
              |||| |||||||||||||||| ||||||
Sbjct: 104370 atgtcccctcctccacctagatggcagt 104343
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>dbj|AK113961.1| Ciona intestinalis cDNA, clone:cicl019b17, full insert sequence
          Length = 1522

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 123 gcaagcaacacagcagaagc 142
           ||||||||||||||||||||
Sbjct: 927 gcaagcaacacagcagaagc 908
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>emb|AL844172.8| Zebrafish DNA sequence from clone DKEY-223H12, complete sequence
          Length = 163195

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   acagcagaagcccccttttc 151
             ||||||||||||||||||||
Sbjct: 43538 acagcagaagcccccttttc 43557


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,962,721
Number of Sequences: 3902068
Number of extensions: 1962721
Number of successful extensions: 33930
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33881
Number of HSP's gapped (non-prelim): 49
length of query: 235
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 213
effective length of database: 17,147,199,772
effective search space: 3652353551436
effective search space used: 3652353551436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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