ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baalp15 |
|---|---|
| Clone Library Name | barley_pub |
>DREB_MOUSE (Q9QXS6) Drebrin (Developmentally-regulated brain protein)| Length = 705 Score = 37.7 bits (86), Expect = 0.026 Identities = 32/138 (23%), Positives = 47/138 (34%), Gaps = 3/138 (2%) Frame = +2 Query: 182 QATQQKPPFPMVQTMGNTRFQXXXXXXXXXXXXXRRQFAVPASQDALALLPCFPETPPVL 361 + T +PP P Q + A P A P + PP+L Sbjct: 405 EVTSSQPPPPPPPPPPTQEAQETTPSLDEELSKEAKVTAAPEVWAGCAAEPPQAQEPPLL 464 Query: 362 PRYFSPYPATYVPRSPLPVTVHTVHRERQGYTEIVELHDAAVLSGYTALDSSSTPENVGP 541 SP + SP + T + ++H A + TA ++ NV P Sbjct: 465 QS--SPLEDSMCTESPEQAALAAPAEPAASVTSVADVHAADTIETTTATTDTTIANNVTP 522 Query: 542 ---SQVQLWPENGKEVYT 586 S + LWP NG+E T Sbjct: 523 AAASLIDLWPGNGEEAST 540
>DREB_RAT (Q07266) Drebrin (Developmentally-regulated brain protein)| Length = 706 Score = 34.3 bits (77), Expect = 0.28 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 3/100 (3%) Frame = +2 Query: 296 AVPASQDALALLPCFPETPPVLPRYFSPYPATYVPRSPLPVTVHTVHRERQGYTEIVELH 475 A P A P + PP+L SP SP + T + + H Sbjct: 442 AAPQVWAGCAEEPPRAQEPPLLQS--SPTEDLMCTESPEQAVLAASPEPDASVTSVADAH 499 Query: 476 DAAVLSGYTALDSSSTPENVGP---SQVQLWPENGKEVYT 586 A + TA +++ +NV P S + LWP NG+E T Sbjct: 500 AADTIETTTATTATTIADNVTPAAASLIDLWPGNGEEAST 539
>RIN3_HUMAN (Q8TB24) Ras and Rab interactor 3 (Ras interaction/interference| protein 3) Length = 984 Score = 33.1 bits (74), Expect = 0.63 Identities = 17/36 (47%), Positives = 19/36 (52%) Frame = +2 Query: 302 PASQDALALLPCFPETPPVLPRYFSPYPATYVPRSP 409 P L L PC P PPVLP +P PA +P SP Sbjct: 281 PPPPPVLPLQPCSPAQPPVLPA-LAPAPACPLPTSP 315
>MRP3_RAT (O88563) Canalicular multispecific organic anion transporter 2| (Multidrug resistance-associated protein 3) (MRP-like protein 2) (MLP-2) Length = 1522 Score = 33.1 bits (74), Expect = 0.63 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = -3 Query: 250 WRLKPCVAHSLDHRKRG-LLLCCLHLVPHMVHCLLWCNIWVHL 125 W PC L H + G ++L CL + + LLWC WV L Sbjct: 46 WAALPCYLFYLRHHRLGYIVLSCLSRLKTALGVLLWCISWVDL 88
>PXK_RAT (Q4FZZ1) PX domain-containing protein kinase-like protein| (Modulator of Na,K-ATPase) (MONaKA) Length = 580 Score = 32.3 bits (72), Expect = 1.1 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = +2 Query: 302 PASQDALALLPCFPETPPVLPRYFSPYPATYVPRSPLPVTVHTVHR 439 P++ + LP P PP P P P T +P PLP V+ V+R Sbjct: 506 PSTAGLSSALPPPPPPPPPPPPPAGPSPGTEMPAPPLPQAVNGVNR 551
>VP2_AHSV6 (O71024) Outer capsid protein VP2| Length = 1051 Score = 31.2 bits (69), Expect = 2.4 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 2/24 (8%) Frame = +2 Query: 368 YFSP--YPATYVPRSPLPVTVHTV 433 YFSP YPAT++ R LP++V T+ Sbjct: 124 YFSPEYYPATFIKRESLPISVDTI 147
>GDA7_WHEAT (P04727) Alpha/beta-gliadin clone PW8142 precursor (Prolamin)| Length = 313 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +2 Query: 302 PASQDALALLPCFPETPPVLPRYFSPYPATYVPRSPLP 415 P+ Q L L P FP+ P LP+ P P ++ P+ P P Sbjct: 67 PSQQPYLQLQP-FPQPQPFLPQLPYPQPQSFPPQQPYP 103
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 30.8 bits (68), Expect = 3.1 Identities = 20/52 (38%), Positives = 22/52 (42%) Frame = -1 Query: 399 GTYVAG*GEKYRGRTGGVSGKHGRRAKASWLAGTANCLLGGGGYMESIVGGG 244 G Y +G G Y G G G GRR +G GGGGY GGG Sbjct: 101 GGYRSGGGGGYSGGGGSYGGGGGRREGGGGYSG------GGGGYSSRGGGGG 146
>LEUD_VIBVY (Q7MP80) 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 200 Score = 30.4 bits (67), Expect = 4.1 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +2 Query: 101 FYGSHLQNQMYPNVAPEQAVYHMWNQVQATQ 193 FYG+ + NQM P EQ V ++ VQAT+ Sbjct: 109 FYGNSINNQMVPVRLTEQEVDELFQYVQATE 139
>DNAA_DEIRA (Q9RYE7) Chromosomal replication initiator protein dnaA| Length = 466 Score = 30.4 bits (67), Expect = 4.1 Identities = 17/41 (41%), Positives = 21/41 (51%) Frame = +2 Query: 299 VPASQDALALLPCFPETPPVLPRYFSPYPATYVPRSPLPVT 421 +PA+QDAL L P PP P +P P T +P P T Sbjct: 79 LPAAQDALLL----PNDPPPAPEAAAPTPKTKAAPTPPPST 115
>IF2B_CAEEL (Q21230) Putative eukaryotic translation initiation factor 2 beta| subunit (eIF-2-beta) Length = 250 Score = 30.0 bits (66), Expect = 5.3 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%) Frame = +3 Query: 99 HFMAHTCKIRCTQMLHQSK----QCTICGTKC 182 + M HTCK TQ+ ++ QCT CG++C Sbjct: 190 YVMCHTCKSPETQLTKDTRLFFLQCTNCGSRC 221
>PRP4_ARATH (O22212) U4/U6 small nuclear ribonucleoprotein PRP4-like protein| Length = 554 Score = 30.0 bits (66), Expect = 5.3 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = +2 Query: 296 AVPASQDALALLPCFPETPPVLPRYFSPYPATYVPRSPLPVTVH 427 A P QDA +L P F PPV+P F P P +P+P+ H Sbjct: 19 APPVLQDASSL-PGFSAIPPVVPPSFPP------PMAPIPMMPH 55
>TMPS2_MOUSE (Q9JIQ8) Transmembrane protease, serine 2 (EC 3.4.21.-)| (Epitheliasin) (Plasmic transmembrane protein X) [Contains: Transmembrane protease, serine 2 non-catalytic chain; Transmembrane protease, serine 2 catalytic chain] Length = 490 Score = 30.0 bits (66), Expect = 5.3 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = +2 Query: 341 PETPPVLPRYFSPYPATYVPRSPLPVTVHTVHRERQGYTEIVELH 475 P PPV P ++ YPA Y P PV + Q T ++ H Sbjct: 27 PPRPPVAPNGYNLYPAQYYPS---PVPQYAPRITTQASTSVIHTH 68
>MATK_AERJP (Q3LFX6) Maturase K (Intron maturase)| Length = 517 Score = 30.0 bits (66), Expect = 5.3 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = +2 Query: 410 LPVTVHTVHRERQGYTEIVELHD 478 +P +H +HRER GY +I+ ++D Sbjct: 490 IPFLLHRLHRERIGYLDIIRMND 512
>US08_HCMVA (P09730) Unique short US8 glycoprotein precursor (gpUS8) (HXLF4)| Length = 227 Score = 30.0 bits (66), Expect = 5.3 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 7/68 (10%) Frame = -3 Query: 307 GWHGELPSRWRRVHG-------EHSWWRLKPCVAHSLDHRKRGLLLCCLHLVPHMVHCLL 149 GW G +W R+H + +RL+ V LDH LHLVP + Sbjct: 97 GWSGRRGRKWGRLHAPECLVETTEAVFRLRQWVPTDLDH-------LTLHLVPCTKCKPM 149 Query: 148 WCNIWVHL 125 WC H+ Sbjct: 150 WCQPRYHI 157
>TSN31_BRARE (Q7ZUB3) Tetraspanin-31 (Tspan-31) (Sarcoma amplified sequence| homolog) Length = 212 Score = 29.6 bits (65), Expect = 6.9 Identities = 14/32 (43%), Positives = 15/32 (46%) Frame = +3 Query: 111 HTCKIRCTQMLHQSKQCTICGTKCKQHSRSPL 206 H C CTQ K+C CG K QHS L Sbjct: 147 HLCTSPCTQ----KKECVTCGLKMLQHSSEAL 174
>MATK_PICSI (Q8MC55) Maturase K (Intron maturase)| Length = 515 Score = 29.3 bits (64), Expect = 9.1 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Frame = +2 Query: 44 NLRDPILNLXRSYPKPYVSFYGSHLQNQMYPNVAP--EQAVYHMWNQ 178 +L+DP ++ R + ++ G+HL + Y P Q +H+WN+ Sbjct: 266 SLKDPNIHYVRYGERSIIAIKGTHLLVKKYRYYLPIFRQCYFHLWNE 312
>MATK_PICRU (O63071) Maturase K (Intron maturase)| Length = 515 Score = 29.3 bits (64), Expect = 9.1 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Frame = +2 Query: 44 NLRDPILNLXRSYPKPYVSFYGSHLQNQMYPNVAP--EQAVYHMWNQ 178 +L+DP ++ R + ++ G+HL + Y P Q +H+WN+ Sbjct: 266 SLKDPNIHYVRYGERSIIAIKGTHLLVKKYRYYLPIFRQCYFHLWNE 312
>MATK_PICPU (Q7HEK3) Maturase K (Intron maturase)| Length = 515 Score = 29.3 bits (64), Expect = 9.1 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Frame = +2 Query: 44 NLRDPILNLXRSYPKPYVSFYGSHLQNQMYPNVAP--EQAVYHMWNQ 178 +L+DP ++ R + ++ G+HL + Y P Q +H+WN+ Sbjct: 266 SLKDPNIHYVRYGERSIIAIKGTHLLVKKYRYYLPIFRQCYFHLWNE 312
>MATK_PICMA (O63072) Maturase K (Intron maturase)| Length = 515 Score = 29.3 bits (64), Expect = 9.1 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Frame = +2 Query: 44 NLRDPILNLXRSYPKPYVSFYGSHLQNQMYPNVAP--EQAVYHMWNQ 178 +L+DP ++ R + ++ G+HL + Y P Q +H+WN+ Sbjct: 266 SLKDPNIHYVRYGERSIIAIKGTHLLVKKYRYYLPIFRQCYFHLWNE 312
>MATK_PICAB (Q6BDH5) Maturase K (Intron maturase)| Length = 515 Score = 29.3 bits (64), Expect = 9.1 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Frame = +2 Query: 44 NLRDPILNLXRSYPKPYVSFYGSHLQNQMYPNVAP--EQAVYHMWNQ 178 +L+DP ++ R + ++ G+HL + Y P Q +H+WN+ Sbjct: 266 SLKDPNIHYVRYGERSIIAIKGTHLLVKKYRYYLPIFRQCYFHLWNE 312 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,472,571 Number of Sequences: 219361 Number of extensions: 2089262 Number of successful extensions: 6186 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 5744 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6172 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
