>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  352 bits (903), Expect = 5e-97
 Identities = 173/174 (99%), Positives = 173/174 (99%)
 Frame = +3

Query: 72  VGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDI 251
           VGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDI
Sbjct: 9   VGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDI 68

Query: 252 SDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFM 431
           SDDQQDITRGKGIVDSLFQAPTG GTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFM
Sbjct: 69  SDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFM 128

Query: 432 DKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 593
           DKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG
Sbjct: 129 DKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 182

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  319 bits (818), Expect = 3e-87
 Identities = 158/176 (89%), Positives = 165/176 (93%), Gaps = 2/176 (1%)
 Frame = +3

Query: 72  VGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTD--KWKGLAY 245
           VGAPASTPTNFLGKKLKKQVTSAVNYHGKSS  NRF VMA E +DE + TD  +WKGLAY
Sbjct: 9   VGAPASTPTNFLGKKLKKQVTSAVNYHGKSSNINRFKVMAKE-LDEGKQTDQDRWKGLAY 67

Query: 246 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPA 425
           DISDDQQDITRGKG VDSLFQAPTGDGTHEAVLSSYEY+SQGLR YDFDNTMGGFYIAP+
Sbjct: 68  DISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPS 127

Query: 426 FMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 593
           FMDKLVVH+SKNFMTLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG
Sbjct: 128 FMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 183

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  280 bits (717), Expect = 2e-75
 Identities = 142/180 (78%), Positives = 157/180 (87%), Gaps = 6/180 (3%)
 Frame = +3

Query: 72  VGAPASTPT--NFLGKKLKK-QVTSAVNYHGKSSKAN-RFTVMAAENIDEKRNTD--KWK 233
           VGAPASTPT  +FLGKKL K QV++AV YHGKSS +N RF  MAA+ +DE + TD  +WK
Sbjct: 9   VGAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWK 68

Query: 234 GLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFY 413
           GLAYDISDDQQDITRGKG+VD+LFQAP GDGTH AVLSSY+Y+SQG + Y+FDN M GFY
Sbjct: 69  GLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFY 128

Query: 414 IAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 593
           IA  FMDKLVVHLSKNFMTLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAG
Sbjct: 129 IAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAG 188

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  275 bits (704), Expect = 6e-74
 Identities = 140/178 (78%), Positives = 153/178 (85%), Gaps = 4/178 (2%)
 Frame = +3

Query: 72  VGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFT-VMAAEN-IDEKRNTD--KWKGL 239
           VGAPASTPT FLGKK+K        YHG +   +R   VMAA+  +D+ + TD  +WKGL
Sbjct: 9   VGAPASTPTIFLGKKVKNY------YHGGNKMKSRVVRVMAAKKELDQGKQTDADRWKGL 62

Query: 240 AYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIA 419
           AYDISDDQQDITRGKGIVDSLFQAP GDGTHEA+LSSYEY+SQGLRKYDFDNTM G YIA
Sbjct: 63  AYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIA 122

Query: 420 PAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 593
           PAFMDKL+VHL+KNFMTLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG
Sbjct: 123 PAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 180

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  241 bits (616), Expect = 9e-64
 Identities = 122/174 (70%), Positives = 140/174 (80%)
 Frame = +3

Query: 72  VGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDI 251
           V APAST   FLGKK    V +   +   + K+N    + A   D++ + D+W+GLAYD 
Sbjct: 26  VSAPAST---FLGKK----VVTVSRFAQSNKKSNGSFKVLAVKEDKQTDGDRWRGLAYDT 78

Query: 252 SDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFM 431
           SDDQQDITRGKG+VDS+FQAP G GTH AVLSSYEYVSQGLR+Y+ DN M GFYIAPAFM
Sbjct: 79  SDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFM 138

Query: 432 DKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 593
           DKLVVH++KNF+TLPNIK+PLILGIWGGKGQGKSFQCELV AKMGINPIMMSAG
Sbjct: 139 DKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAG 192

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  238 bits (607), Expect = 1e-62
 Identities = 124/176 (70%), Positives = 142/176 (80%), Gaps = 3/176 (1%)
 Frame = +3

Query: 75  GAPAST--PTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAE-NIDEKRNTDKWKGLAY 245
           GA AS    T F G  LKK   SA  +   SS    F ++A E + D++ + DKWKGLAY
Sbjct: 22  GARASLVPSTAFFGSSLKK---SAAKFPKASS--GNFKIVAQEISEDQQTDKDKWKGLAY 76

Query: 246 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPA 425
           DISDDQQDITRGKG+VD+LFQAP   GTH AV+SSY+Y+SQGLR+Y+ DN M GFYIAPA
Sbjct: 77  DISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPA 136

Query: 426 FMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 593
           FMDKLVVH++KNF++LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG
Sbjct: 137 FMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 192

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  238 bits (607), Expect = 1e-62
 Identities = 124/176 (70%), Positives = 142/176 (80%), Gaps = 3/176 (1%)
 Frame = +3

Query: 75  GAPAST--PTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAE-NIDEKRNTDKWKGLAY 245
           GA AS    T F G  LKK   SA  +   SS    F ++A E + D++ + DKWKGLAY
Sbjct: 22  GARASLVPSTAFFGSSLKK---SAAKFPKASS--GNFKIVAQEISEDQQTDKDKWKGLAY 76

Query: 246 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPA 425
           DISDDQQDITRGKG+VD+LFQAP   GTH AV+SSY+Y+SQGLR+Y+ DN M GFYIAPA
Sbjct: 77  DISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPA 136

Query: 426 FMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 593
           FMDKLVVH++KNF++LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG
Sbjct: 137 FMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 192

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  236 bits (602), Expect = 4e-62
 Identities = 119/173 (68%), Positives = 140/173 (80%), Gaps = 3/173 (1%)
 Frame = +3

Query: 84  ASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK--WKGLAYDIS 254
           AS P++ FLG  LKK     VN    +SK +  ++    ++DE + TDK  WKGLA+D S
Sbjct: 25  ASVPSSTFLGSSLKK-----VNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFDTS 79

Query: 255 DDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMD 434
           DDQQDITRGKG VDSLFQAP G GTH A++SSYEY+S GLR+Y+FDN M G+YIAPAFMD
Sbjct: 80  DDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMD 139

Query: 435 KLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 593
           KLVVH++KNFMTLPN+K+PLILGIWGGKGQGKSFQCELVFAKM I+PIMMSAG
Sbjct: 140 KLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVFAKMRISPIMMSAG 192

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  234 bits (598), Expect = 1e-61
 Identities = 121/175 (69%), Positives = 137/175 (78%), Gaps = 3/175 (1%)
 Frame = +3

Query: 78  APASTP-TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTD--KWKGLAYD 248
           A  S P T F GK LKK     V+    ++K+ R  V    ++D K+ TD  +WKGL  D
Sbjct: 23  AGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRI-VAEQIDVDPKKQTDSDRWKGLVQD 81

Query: 249 ISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAF 428
            SDDQQDITRGKG+VDSLFQAPTG GTH AVL SYEYVSQGLR+Y+ DN + GFYIAPAF
Sbjct: 82  FSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAF 141

Query: 429 MDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 593
           MDKLVVH++KNF+ LPNIK+PLILGIWGGKGQGKSFQCELVF KMGINPIMMSAG
Sbjct: 142 MDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAG 196

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  234 bits (597), Expect = 1e-61
 Identities = 118/176 (67%), Positives = 143/176 (81%), Gaps = 3/176 (1%)
 Frame = +3

Query: 75  GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAY 245
           G  AS P++ F G  LKK ++S V  + K +  +   V A + I+E + T  D+W+GLAY
Sbjct: 22  GGGASGPSSAFFGTSLKKVISSRVP-NSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAY 80

Query: 246 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPA 425
           D+SDDQQDITRGKG+VDSLFQAP   GTH AV+SS++Y+S GLR+Y+FDN   GFYIAPA
Sbjct: 81  DVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPA 140

Query: 426 FMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 593
           F+DKLVVH++KNFMTLPNIK+PLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAG
Sbjct: 141 FLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAG 196

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  232 bits (592), Expect = 5e-61
 Identities = 121/177 (68%), Positives = 136/177 (76%), Gaps = 5/177 (2%)
 Frame = +3

Query: 78  APASTP-TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAE--NIDEKRNT--DKWKGLA 242
           A  S P T F GK LKK     V+        NR   +AAE  + D K+ T  D+WKGL 
Sbjct: 23  AGTSVPSTAFFGKTLKKVYGKGVS---SPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLV 79

Query: 243 YDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAP 422
            D SDDQQDI RGKG+VDSLFQAPTG GTH AVL SYEYVSQGLR+Y+ DNT+ GFYIAP
Sbjct: 80  QDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAP 139

Query: 423 AFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 593
           +FMDKLVVH++KNF+ LPNIK+PLILG+WGGKGQGKSFQCELVF KMGINPIMMSAG
Sbjct: 140 SFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAG 196

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  232 bits (591), Expect = 7e-61
 Identities = 123/176 (69%), Positives = 139/176 (78%), Gaps = 3/176 (1%)
 Frame = +3

Query: 75  GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAY 245
           GA AS PT+ F G  LKK V S V  + K +  +   V A + I+E + T  D+WKGLAY
Sbjct: 22  GAGASAPTSAFFGTSLKKAVASRVP-NSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAY 80

Query: 246 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPA 425
           DISDDQQDITRGKG+VD LFQAP   GTH AV+SSYEY+S GLR+   DN   GFYIAPA
Sbjct: 81  DISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLRQ--LDNIKDGFYIAPA 138

Query: 426 FMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 593
           F+DKLVVH++KNFMTLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG
Sbjct: 139 FLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 194

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  231 bits (589), Expect = 1e-60
 Identities = 120/173 (69%), Positives = 133/173 (76%), Gaps = 1/173 (0%)
 Frame = +3

Query: 78  APASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDIS 254
           A AS PT+ FLG  LKK           SS+    TV AAEN  E++NTDKW  LA D S
Sbjct: 23  AGASVPTSGFLGSSLKKHTNVRFP---SSSRTTSMTVKAAEN--EEKNTDKWAHLAKDFS 77

Query: 255 DDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMD 434
           DDQ DI RGKG+VDSLFQAP   GTH  + SS+EY SQGLRKYD DN +G FYIAPAFMD
Sbjct: 78  DDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMD 137

Query: 435 KLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 593
           KLVVH++KNF+ LPNIKIPLILG+WGGKGQGKSFQCELVFAK+GINPIMMSAG
Sbjct: 138 KLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAG 190

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score =  228 bits (581), Expect = 1e-59
 Identities = 111/166 (66%), Positives = 131/166 (78%), Gaps = 2/166 (1%)
 Frame = +3

Query: 102 FLGKKLKKQVTSAVNYHGKSSK--ANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDIT 275
           FLG +LK      V+    +SK     F ++A ++ +++   DKW+GLA+D SDDQQDIT
Sbjct: 30  FLGSRLK------VSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDIT 83

Query: 276 RGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLS 455
           RGKG+ D LFQAP G GTH AVLSSYEY+S GLR Y +DN + GFYIAPAFMDKL VH+ 
Sbjct: 84  RGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIV 143

Query: 456 KNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 593
           KNF+TLPNIK+PLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAG
Sbjct: 144 KNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAG 189

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  228 bits (580), Expect = 1e-59
 Identities = 114/173 (65%), Positives = 133/173 (76%), Gaps = 1/173 (0%)
 Frame = +3

Query: 78  APASTP-TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDIS 254
           A  S P T F GK LKK     V+       +NR   + A+ +DE +  D+WKGL  + S
Sbjct: 23  AGTSVPSTAFFGKSLKKVYAKGVS---SPKVSNRNLRVVAQEVDETKE-DRWKGLYDNTS 78

Query: 255 DDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMD 434
           DDQQDI RGKG+VDSLFQAPTG GTH A+++SYEYVSQ L+ Y  DN + GFYIAPAFMD
Sbjct: 79  DDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMD 138

Query: 435 KLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 593
           KLVVH++KNF+TLPNIK+PLILG+WGGKGQGKSFQCELVF KMGINPIMMSAG
Sbjct: 139 KLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAG 191

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score =  157 bits (398), Expect = 2e-38
 Identities = 77/131 (58%), Positives = 98/131 (74%), Gaps = 3/131 (2%)
 Frame = +3

Query: 210 KRNTDKWKGL--AYDISDDQQDITRGKGIVDSLFQAPTG-DGTHEAVLSSYEYVSQGLRK 380
           ++   +W+ +    D SDDQQDITRG+ +VD LFQ   G  GTH AVLSS EY+SQ   +
Sbjct: 37  RKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQS--R 94

Query: 381 YDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAK 560
             F+N   GFYI+PAF+DK+ +H++KNFM LP IK+PLILGIWGGKGQGK+FQC L + K
Sbjct: 95  ASFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKK 154

Query: 561 MGINPIMMSAG 593
           +GI PI+MSAG
Sbjct: 155 LGIAPIVMSAG 165

>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score = 89.0 bits (219), Expect = 1e-17
 Identities = 37/62 (59%), Positives = 50/62 (80%)
 Frame = +3

Query: 408 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 587
           +YIAP F+DKL VH++KNF+ LP +++PLILGI G KG+GK+FQCEL F KMG+   ++S
Sbjct: 3   YYIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLIS 62

Query: 588 AG 593
            G
Sbjct: 63  GG 64

>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 414

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 37/62 (59%), Positives = 50/62 (80%)
 Frame = +3

Query: 408 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 587
           +YIAP F+DKL VH++KNF+ +P +++PLILGI G KG+GK+FQCEL F KMGI   ++S
Sbjct: 3   YYIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLIS 62

Query: 588 AG 593
            G
Sbjct: 63  GG 64

>G6PI_PSEHT (Q3IKH4) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)|
           (Phosphoglucose isomerase) (PGI) (Phosphohexose
           isomerase) (PHI)
          Length = 548

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +3

Query: 357 YVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 536
           Y SQ +  YD    M   Y+    M+    H++    T+P   +P+I G+ G  GQ   +
Sbjct: 328 YTSQAILPYDQALHMLPAYLQQGEMESNGKHVNFAGETVPYTTVPIIWGMTGINGQHAFY 387

Query: 537 QC 542
           QC
Sbjct: 388 QC 389

>RS3A_PICTO (Q6KYU3) 30S ribosomal protein S3Ae|
          Length = 209

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = +3

Query: 78  APASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISD 257
           +PA+ P+  +G+K++  V+   ++ G   K++   +   +    KR T ++ G  + +SD
Sbjct: 35  SPAADPSLMIGRKVEVPVS---DFTGNFRKSSTMVIFRVKECTGKRCTTEFIG--HKVSD 89

Query: 258 D--QQDITRGKGIVDSLFQAPTGDG 326
           D  ++ + R K  +D +  + T DG
Sbjct: 90  DTIRRMVRRRKERIDIIMPSKTKDG 114

>PCRB_SULAC (Q4JAS3) Protein pcrB homolog|
          Length = 257

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -1

Query: 413 VEASHGVVEVVLPQALADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLLVVGDIVRK 237
           +EA  G  E V P+A+  V    +DG+V        EER  + + +G  ++V G+++ +
Sbjct: 176 LEAGSGASETVKPEAIKVVKNTVKDGVVIVGGGVTSEERARNLVLAGADIIVTGNVIER 234

>PTR2_CANAL (P46030) Peptide transporter PTR2|
          Length = 623

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
 Frame = -2

Query: 325 PSPVGAWKSESTMPFPLVMSCW----SSEISYAR------PFHLSVFLFSSMFSAAMTV 179
           P+P+ AWK+ S         CW    + E++Y R          ++FL  S FSAA+++
Sbjct: 488 PAPITAWKASSLFILAAAGECWAYTTAYELAYTRSPPALKSLVYALFLVMSAFSAALSL 546

>TRPC_HALVO (P18304) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)|
          Length = 251

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 26/95 (27%), Positives = 42/95 (44%)
 Frame = -1

Query: 518 LASPDTQDEWDLDVGQGHEVFGEMDNKLVHESRSDVEASHGVVEVVLPQALADVLVGAED 339
           L    T++E    +  G ++ G  +  L       +E   G  E + P+A  DVL+ AE 
Sbjct: 158 LVEVHTREELTAALAAGADIVGINNRDL-----GKLEVDLGTFEELAPEAPEDVLLVAES 212

Query: 338 GLVGAVARGRLEERVHDALPSGDVLLVVGDIVRKT 234
           G+       R+ E   DAL  G  ++  GD+ + T
Sbjct: 213 GVQTVDDARRMREAGADALLVGTAIM-DGDVRQNT 246

>ACCA_STRT2 (Q5M5R1) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase
           carboxyltransferase subunit alpha) (ACCase subunit
           alpha)
          Length = 256

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +3

Query: 270 ITRGKGIVDSL---FQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKL 440
           I +GK + D+L   F  P  +G  +A+    +    G     F NT G +    A     
Sbjct: 62  IQKGKNLQDNLNRNFGQPHPEGYRKALRLMKQAEKFGRSVVTFINTAGAYPGVGAEERGQ 121

Query: 441 VVHLSKNFMTLPNIKIPLILGIWGGKGQG 527
              +++N M + ++K+P+I  I G  G G
Sbjct: 122 GEAIARNLMEMSDLKVPIIAIIIGEGGSG 150

>ACCA_STRT1 (Q5M174) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase
           carboxyltransferase subunit alpha) (ACCase subunit
           alpha)
          Length = 256

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +3

Query: 270 ITRGKGIVDSL---FQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKL 440
           I +GK + D+L   F  P  +G  +A+    +    G     F NT G +    A     
Sbjct: 62  IQKGKNLQDNLNRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQ 121

Query: 441 VVHLSKNFMTLPNIKIPLILGIWGGKGQG 527
              +++N M + ++K+P+I  I G  G G
Sbjct: 122 GEAIARNLMEMSDLKVPIIAIIIGEGGSG 150

>PRMA_LEGPH (Q5ZYB1) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 289

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = -1

Query: 485 LDVGQGHEVFGEMDNKLVHESRSDVEASH---GVVEVVLPQALADV--LVGAEDGLVGAV 321
           + +G  H    ++DN+ +  ++S+  A+H     + +  P+AL +   LV A   L   +
Sbjct: 174 IKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISFPEALQNPVHLVIANILLAPLI 233

Query: 320 ARGRLEERVHDALPSGDVLLVVG 252
           +   L+ER H  LPSG  L+  G
Sbjct: 234 S---LKERFHQLLPSGAHLVTSG 253

>COAE_CHLTE (Q8KD46) Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A|
           kinase)
          Length = 208

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +3

Query: 483 KIPLILGIWGGKGQGKSFQCELVFAKMG 566
           ++PL++G+ GG G GKS  C ++ A+MG
Sbjct: 4   RLPLLVGVTGGIGSGKSTVCAML-AEMG 30

>VPG_BLRV (P19127) Putative genome-linked protein precursor (VPG) (16 kDa|
           protein) (ORF 2)
          Length = 142

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 568 MPILANTSSHWNDFP*PL-PPQIPKMSGILMLGRVMKFLERWTTSLS 431
           M I++ TSS W   P PL PPQ+P +   ++  R  +   + T S S
Sbjct: 49  MSIISRTSS-WRTSPRPLPPPQVPSLMNSILTSRTQQSSPKLTNSAS 94

>ACCA_STRR6 (Q8DR13) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase
           carboxyltransferase subunit alpha) (ACCase subunit
           alpha)
          Length = 255

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +3

Query: 270 ITRGKGIVDSL---FQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKL 440
           I +GK + D+L   F  P  +G  +A+    +    G     F NT G +    A     
Sbjct: 61  IQKGKSLQDNLKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQ 120

Query: 441 VVHLSKNFMTLPNIKIPLILGIWGGKGQG 527
              +++N M + ++K+P+I  I G  G G
Sbjct: 121 GEAIARNLMEMSDLKVPIIAIIIGEGGSG 149

>ACCA_STRPN (Q9FBB7) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase
           carboxyltransferase subunit alpha) (ACCase subunit
           alpha)
          Length = 255

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +3

Query: 270 ITRGKGIVDSL---FQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKL 440
           I +GK + D+L   F  P  +G  +A+    +    G     F NT G +    A     
Sbjct: 61  IQKGKSLQDNLKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQ 120

Query: 441 VVHLSKNFMTLPNIKIPLILGIWGGKGQG 527
              +++N M + ++K+P+I  I G  G G
Sbjct: 121 GEAIARNLMEMSDLKVPIIAIIIGEGGSG 149

>DPO3A_LACLA (Q9CI70) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1060

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
 Frame = +3

Query: 144  NYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGD 323
            N+H K +      + A +  D  R       LAY+++D    +       D +F A +G 
Sbjct: 807  NFHKKENILPLIQIGAFDYADSNRGK-----LAYNLADHANLLNYYS---DDIFMASSGG 858

Query: 324  GT--HEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNI 482
            G   HEA     E  S+   KYDF+  + G  + P  +  L      NF  L  +
Sbjct: 859  GFAYHEA-----EDYSE-TEKYDFEKNLLGIGVTPHPLQNLARRFEGNFTPLAQL 907

>RT107_YEAST (P38850) Regulator of Ty1 transposition protein 107|
          Length = 1070

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 156 KSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAP 314
           K  + +   +++ E++  K++TDK+  L   +SD+   I   K  V+S +  P
Sbjct: 688 KQGEESTGKLISTEDVTSKKDTDKFSHLFEGLSDNDDHINDEKPAVNSKYTTP 740

>PTN13_MOUSE (Q64512) Tyrosine-protein phosphatase non-receptor type 13 (EC|
           3.1.3.48) (Protein tyrosine phosphatase PTP-BL)
           (Protein-tyrosine phosphatase RIP) (protein tyrosine
           phosphatase DPZPTP) (PTP36)
          Length = 2453

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 246 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRK 380
           D S   +D  RGKG+            THEA LS   +V++GL K
Sbjct: 195 DRSQAIRDRLRGKGLPTGRSSTSDALDTHEAPLSQQTFVNKGLSK 239

>UCK1_MOUSE (P52623) Uridine-cytidine kinase 1 (EC 2.7.1.48) (UCK 1) (Uridine|
           monophosphokinase 1) (Cytidine monophosphokinase 1)
          Length = 277

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 489 PLILGIWGGKGQGKSFQCELVFAKMGINPI 578
           P ++G+ GG   GKS  CE +   +G N +
Sbjct: 23  PFLIGVSGGTASGKSTVCEKIMELLGQNEV 52

>UCK1_HUMAN (Q9HA47) Uridine-cytidine kinase 1 (EC 2.7.1.48) (UCK 1) (Uridine|
           monophosphokinase 1) (Cytidine monophosphokinase 1)
          Length = 277

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 489 PLILGIWGGKGQGKSFQCELVFAKMGINPI 578
           P ++G+ GG   GKS  CE +   +G N +
Sbjct: 23  PFLIGVSGGTASGKSTVCEKIMELLGQNEV 52

>PRMA_LEGPL (Q5WZ79) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 289

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = -1

Query: 485 LDVGQGHEVFGEMDNKLVHESRSDVEASH---GVVEVVLPQALADV--LVGAEDGLVGAV 321
           + +G  H    ++DN+ +  ++S+  A+H     + +  P+AL +   LV A   L   +
Sbjct: 174 IKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISSPEALQNPVHLVIANILLAPLI 233

Query: 320 ARGRLEERVHDALPSGDVLLVVG 252
           +   L+ER H  LPSG  L+  G
Sbjct: 234 S---LKERFHQLLPSGAHLVTSG 253

>PRMA_LEGPA (Q5X7S8) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 289

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = -1

Query: 485 LDVGQGHEVFGEMDNKLVHESRSDVEASH---GVVEVVLPQALADV--LVGAEDGLVGAV 321
           + +G  H    ++DN+ +  ++S+  A+H     + +  P+AL +   L+ A   L   +
Sbjct: 174 IKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISTPEALQNPVHLIIANILLAPLI 233

Query: 320 ARGRLEERVHDALPSGDVLLVVG 252
           +   L+ER H  LPSG  L+  G
Sbjct: 234 S---LKERFHQLLPSGAHLVTSG 253


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,467,090
Number of Sequences: 219361
Number of extensions: 1588427
Number of successful extensions: 5459
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 5302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5445
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)