>NKX32_MOUSE (P97503) Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog|
           1)
          Length = 333

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
 Frame = -2

Query: 614 LREANYGKQRCQNYLQTNRAAQEHEQVSTGVHSNSMNPTRSFV--FIFRSIGEANSQEAG 441
           L E N G++RC +    +   +    +        ++P +        RS  E ++  +G
Sbjct: 97  LSEENEGRRRCADVPGASGTGRARVTLGLDQPGCELHPAKDLEEEAPVRSDSEMSASVSG 156

Query: 440 NSA---SDRKISTGGSRIWG*HQAAEMNNSGGVLAPHGAVQQPSLTNPGRKR 294
           + +    D  ++ GG+R+ G   AA    SGG        ++P+   P +KR
Sbjct: 157 DHSPRGEDDSVTPGGARVPGLRGAAGSGASGGQAGGVEEEEEPAAPKPRKKR 208

>RDRP_BDV (P52639) Large structural protein (L protein) (P180) [Includes:|
           RNA-directed RNA polymerase (EC 2.7.7.48); mRNA
           (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA
           guanylyltransferase (EC 2.7.7.-)]
          Length = 1711

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 257 SCGFYGREVALRGASFPDWLSLV 325
           +C    R V LR A +PDWLSLV
Sbjct: 838 TCSLVNRVVKLRIAPYPDWLSLV 860

>SVP2_MOUSE (P18419) Seminal vesicle protein 2 precursor (Seminal vesicle|
           secretory protein IV) (SVS IV)
          Length = 113

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = -2

Query: 629 TLRLPLREANYGKQRCQNYLQTNRAAQEHEQVSTGVHSNSMNPTRSFVFIFRSIGEANSQ 450
           +L L L     GK+  + +LQ+    +E   + +  H +  +    FV    SIG+  S+
Sbjct: 10  SLLLLLVTGAIGKKTKEKFLQSEETVRESFSMGSRGHMSRSSEPEVFVRPQDSIGDEASE 69

Query: 449 EAGNSASDRKIS 414
           E  +S+S R+ S
Sbjct: 70  EMSSSSSSRRRS 81

>TBX22_MOUSE (Q8K402) T-box transcription factor TBX22 (T-box protein 22)|
          Length = 517

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
 Frame = -2

Query: 611 REANYGKQRCQNYLQTNRAAQEHEQVSTGVHSNSMNPTR-----SFVFIFRSIGEANSQE 447
           R+A   ++  Q  LQ  +  +E E++      +S  P +     S   +F    E+NSQE
Sbjct: 22  RKAQDPREEMQPELQEEQFVEEGEEILRSPSRDSQQPEKRLKAESSKTVFSCSDESNSQE 81

Query: 446 AGNSASDRKISTGGSRIW 393
           +    S  ++   GS +W
Sbjct: 82  SLQEESVIQVELQGSDLW 99

>CLSPN_MOUSE (Q80YR7) Claspin|
          Length = 1315

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
 Frame = -3

Query: 598 TASSDARTTCKQ-TEQHKNMNKSVLVCTATP*IQHEASFLFSDQSVKQ----IRKKQETA 434
           T + D + T K+ T+   ++ KSV +C   P        LF D S K       +K ET 
Sbjct: 666 TETKDEKETDKENTDTSSDIGKSVALCVPKPLSSDSTLLLFKDSSSKMGYFPTEEKSETD 725

Query: 433 HRIARSQQEDLEFGDDT 383
             +A+ Q + L+  D +
Sbjct: 726 EHLAK-QSDKLDEDDSS 741


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,222,251
Number of Sequences: 219361
Number of extensions: 1708005
Number of successful extensions: 4423
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4421
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)