ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baalp02 |
|---|---|
| Clone Library Name | barley_pub |
>XPO1_RAT (Q80U96) Exportin-1 (Exp1) (Chromosome region maintenance 1 protein| homolog) Length = 1071 Score = 153 bits (386), Expect = 4e-37 Identities = 79/179 (44%), Positives = 115/179 (64%), Gaps = 3/179 (1%) Frame = +2 Query: 11 FFSLLRAIGTHCFKALIQLSSQQLKLVIDSINWAFRHTERNIAETGLSLLLEILKNFQAS 190 FF LL+A+ +HCF A + + Q KLV+DSI WAF+HT RN+A+TGL +L +L+N Sbjct: 848 FFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQE 907 Query: 191 EFTNQ-FYKTYFLNIEQEIFAVLTDSFHKPGFKLHVLVLQHLFCVVD--SLTEPLWDAST 361 E Q FY+TYF +I Q IF+V+TD+ H G +H +L ++F +V+ ++ PL S Sbjct: 908 EAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTPLNPGSP 967 Query: 362 VSYPSNALFVRDYTIKLLGASFPNMTVAEVTKFVDGLLGSRHDLPSFKNHIRDFPGAIK 538 V SN +F++DY LL ++FP++ A+V FV GL D+P+FK H+RDF IK Sbjct: 968 V---SNQMFIQDYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIK 1023
>XPO1_MOUSE (Q6P5F9) Exportin-1 (Exp1) (Chromosome region maintenance 1 protein| homolog) Length = 1071 Score = 150 bits (380), Expect = 2e-36 Identities = 77/179 (43%), Positives = 115/179 (64%), Gaps = 3/179 (1%) Frame = +2 Query: 11 FFSLLRAIGTHCFKALIQLSSQQLKLVIDSINWAFRHTERNIAETGLSLLLEILKNFQAS 190 FF LL+A+ +HCF A + + Q KLV+DSI WAF+HT RN+A+TGL +L +L+N Sbjct: 848 FFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQE 907 Query: 191 EFTNQ-FYKTYFLNIEQEIFAVLTDSFHKPGFKLHVLVLQHLFCVVD--SLTEPLWDAST 361 E Q FY+TYF +I Q IF+V+TD+ H G +H +L ++F +V+ ++ PL + Sbjct: 908 EAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTPLNPGNP 967 Query: 362 VSYPSNALFVRDYTIKLLGASFPNMTVAEVTKFVDGLLGSRHDLPSFKNHIRDFPGAIK 538 V +N +F++DY LL ++FP++ A+V FV GL D+P+FK H+RDF IK Sbjct: 968 V---NNQMFIQDYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIK 1023
>XPO1_HUMAN (O14980) Exportin-1 (Exp1) (Chromosome region maintenance 1 protein| homolog) Length = 1071 Score = 145 bits (366), Expect = 9e-35 Identities = 75/179 (41%), Positives = 114/179 (63%), Gaps = 3/179 (1%) Frame = +2 Query: 11 FFSLLRAIGTHCFKALIQLSSQQLKLVIDSINWAFRHTERNIAETGLSLLLEILKNFQAS 190 FF LL+A+ +HCF A + + Q KLV+DSI WAF+HT RN+A+TGL +L +L+N Sbjct: 848 FFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQE 907 Query: 191 EFTNQ-FYKTYFLNIEQEIFAVLTDSFHKPGFKLHVLVLQHLFCVVD--SLTEPLWDAST 361 E Q FY+TYF +I Q IF+V+TD+ H G +H +L ++F +V+ ++ L + Sbjct: 908 EAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTSLNPGNP 967 Query: 362 VSYPSNALFVRDYTIKLLGASFPNMTVAEVTKFVDGLLGSRHDLPSFKNHIRDFPGAIK 538 V +N +F+++Y LL ++FP++ A+V FV GL D+P+FK H+RDF IK Sbjct: 968 V---NNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIK 1023
>XPO1_SCHPO (P14068) Exportin-1 (Chromosome region maintenance protein 1)| (Caffeine resistance protein 2) Length = 1078 Score = 144 bits (364), Expect = 1e-34 Identities = 78/178 (43%), Positives = 116/178 (65%), Gaps = 7/178 (3%) Frame = +2 Query: 11 FFSLLRAIGTHCFKALIQLSSQQLKLVIDSINWAFRHTERNIAETGLSLLLEILKNF--Q 184 FF LLRAI +CF AL+ + + Q KLVI+SI W+F+H R+I ETGL++LLE++ N Sbjct: 849 FFQLLRAINLNCFPALLNIPAPQFKLVINSIVWSFKHVSRDIQETGLNILLELINNMASM 908 Query: 185 ASEFTNQFYKTYFLNIEQEIFAVLTDSFHKPGFKLHVLVLQHLFCVVDS--LTEPLWDAS 358 + +N F++TY++++ Q+I VLTDS HK GFKL L+L LF +V+S +T PL+D S Sbjct: 909 GPDVSNAFFQTYYISLLQDILYVLTDSDHKSGFKLQSLILARLFYLVESNQITVPLYDPS 968 Query: 359 TVSYP---SNALFVRDYTIKLLGASFPNMTVAEVTKFVDGLLGSRHDLPSFKNHIRDF 523 +P +N LF+R Y + LL +FP++ ++ +FV +L D FK +RDF Sbjct: 969 --QFPQEMNNQLFLRQYIMNLLVTAFPHLQPIQIQEFVQTVLALNQDSIKFKLALRDF 1024
>XPO1_DROME (Q9TVM2) Exportin-1 (Chromosome region maintenance 1 protein)| (Protein embargoed) Length = 1063 Score = 133 bits (334), Expect = 4e-31 Identities = 64/172 (37%), Positives = 107/172 (62%), Gaps = 1/172 (0%) Frame = +2 Query: 11 FFSLLRAIGTHCFKALIQLSSQQLKLVIDSINWAFRHTERNIAETGLSLLLEILKNF-QA 187 F+ LL+A+ HCFKA + + Q KLV DS+ WAF+HT RN+A+ GL++L ++L+N Q Sbjct: 841 FYELLQAVNAHCFKAFLNIPPAQFKLVFDSVVWAFKHTMRNVADMGLNILFKMLQNLDQH 900 Query: 188 SEFTNQFYKTYFLNIEQEIFAVLTDSFHKPGFKLHVLVLQHLFCVVDSLTEPLWDASTVS 367 FY+TYF +I +IF+V+TD+ H G H ++L ++F +V++ + + Sbjct: 901 PGAAQSFYQTYFTDILMQIFSVVTDTSHTAGLPNHAIILAYMFSLVENRKITV---NLGP 957 Query: 368 YPSNALFVRDYTIKLLGASFPNMTVAEVTKFVDGLLGSRHDLPSFKNHIRDF 523 P N +F+++Y LL ++F +++ +V FV GL ++ +FK H+RDF Sbjct: 958 IPDNMIFIQEYVASLLKSAFTHLSDNQVKVFVTGLFNLDENVQAFKEHLRDF 1009
>XPO1_YEAST (P30822) Exportin-1 (Chromosome region maintenance protein 1)| Length = 1084 Score = 115 bits (287), Expect = 1e-25 Identities = 64/185 (34%), Positives = 99/185 (53%), Gaps = 6/185 (3%) Frame = +2 Query: 8 QFFSLLRAIGTHCFKALIQLSSQQLKLVIDSINWAFRHTERNIAETGLSLLLEILKNFQA 187 +F+ LL+ I F A ++L KL +D+I WAF+H R++ GL + L+++KN + Sbjct: 858 EFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIER 917 Query: 188 S---EFTNQFYKTYFLNIEQEIFAVLTDSFHKPGFKLHVLVLQHLFCVV--DSLTEPLW- 349 F N+F+K YF E F VLTDS HK GF L+L L +V + ++ PL+ Sbjct: 918 MGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLISLVYDNKISVPLYQ 977 Query: 350 DASTVSYPSNALFVRDYTIKLLGASFPNMTVAEVTKFVDGLLGSRHDLPSFKNHIRDFPG 529 +A SN +++ Y +L +FP++T ++ F+ L DL FK +RDF Sbjct: 978 EAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQYKDLVVFKGTLRDFLV 1037 Query: 530 AIKGV 544 IK V Sbjct: 1038 QIKEV 1042
>MATK_KUNBA (Q9TKC0) Maturase K (Intron maturase)| Length = 503 Score = 30.0 bits (66), Expect = 5.3 Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 9/126 (7%) Frame = +2 Query: 50 KALIQLSSQQLKLVI---DSI-NWAFRHTER---NIAETGLSLLLE--ILKNFQASEFTN 202 K LI QQ L+ DSI N F H + I G ++++E I F S Sbjct: 58 KRLITRMYQQNPLIFSAKDSIQNQFFGHNKNLYSQILSEGFAVIVEXPISLRFLFSLERK 117 Query: 203 QFYKTYFLNIEQEIFAVLTDSFHKPGFKLHVLVLQHLFCVVDSLTEPLWDASTVSYPSNA 382 + K+Y L IF+ L D F + VL+ H+ + T W S Sbjct: 118 EIAKSYNLRSIHSIFSFLEDKFTHLDYVSDVLIPYHIHLEILXQTLRYWVKDASSLHLLR 177 Query: 383 LFVRDY 400 F+ DY Sbjct: 178 FFLHDY 183
>AHM6_ARATH (Q9SZC9) Putative copper-transporting ATPase PAA1 (EC 3.6.3.4)| Length = 949 Score = 29.6 bits (65), Expect = 6.9 Identities = 37/141 (26%), Positives = 52/141 (36%), Gaps = 5/141 (3%) Frame = +2 Query: 23 LRAIGTHCFKALIQLSSQQLKLVIDSINWAFRHTERNIAETGLSLLLEILKNFQASEFTN 202 + + G H LI L KLV+D I + + GL L + A+ Sbjct: 282 IHSTGFHVSLCLITLLGPGRKLVLDGIKSLLKGSPNMNTLVGLGALSSFSVSSLAAMIPK 341 Query: 203 QFYKTYFLNIEQEIFAVLTDSFHKPGFKLHVLV-LQHLFCVVDSLTEPLWDA----STVS 367 +KT+F I VL + K+ + L V+ S L D STV Sbjct: 342 LGWKTFFEEPVMLIAFVLLGRNLEQRAKIKATSDMTGLLSVLPSKARLLLDGDLQNSTVE 401 Query: 368 YPSNALFVRDYTIKLLGASFP 430 P N+L V D + L G P Sbjct: 402 VPCNSLSVGDLVVILPGDRVP 422
>MDM12_SCHPO (Q92377) Mitochondrial inheritance component mdm12| Length = 273 Score = 29.6 bits (65), Expect = 6.9 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 4/112 (3%) Frame = +2 Query: 140 ETGLSLLLEILKNFQASEFTNQFYKTYFLNIEQEIFAVLTDSFHKPGFKLHVLVLQHLFC 319 + LSL + N+ SEF +K F+ I + AVL K G + H+ C Sbjct: 160 DANLSLEAVLSMNYPNSEFAVLPFKLSFIRISIDAIAVLA----KMGKRTHL-------C 208 Query: 320 VVDSLTEPLWD-ASTVSYPSNALFVRDYTIK-LLGASFPNM--TVAEVTKFV 463 VD+L + AS+V +RD T++ ++G S + VA+V KFV Sbjct: 209 FVDTLLHGTGEHASSV--------IRDLTVESIIGESNKQLLKNVAKVEKFV 252
>MATK_KUNPU (Q9TKB6) Maturase K (Intron maturase)| Length = 503 Score = 29.3 bits (64), Expect = 9.0 Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 9/126 (7%) Frame = +2 Query: 50 KALIQLSSQQLKLVI---DSI-NWAFRHTER---NIAETGLSLLLEI--LKNFQASEFTN 202 K LI QQ L+ DSI N F H + I G ++++EI F Sbjct: 58 KRLITRMYQQNPLIFSAKDSIQNQFFGHNKNLYSQILSEGFAVIVEIPFSLRFLFLLERK 117 Query: 203 QFYKTYFLNIEQEIFAVLTDSFHKPGFKLHVLVLQHLFCVVDSLTEPLWDASTVSYPSNA 382 + K+Y L IF+ L D F + VL+ H+ + T W S Sbjct: 118 EIAKSYHLRSIHSIFSFLEDKFTHLDYVSDVLIPYHIHLEILVQTLRYWVKDASSLHLLR 177 Query: 383 LFVRDY 400 LF+ DY Sbjct: 178 LFLHDY 183 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,034,005 Number of Sequences: 219361 Number of extensions: 1714945 Number of successful extensions: 4065 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3938 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4051 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
