Clone Name | baalo23 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ841792.1| Zea mays mRNA for Ser/Thr receptor-like kinase (lrk1 gene) Length = 2039 Score = 101 bits (51), Expect = 3e-18 Identities = 102/119 (85%) Strand = Plus / Plus Query: 41 atccggttcccgttccggcttttgagccacccaccatcgtgtggtgccccaggcatgcag 100 ||||||||||| || |||||| |||||||| ||||| ||||| | || || ||||| Sbjct: 140 atccggttcccctttcggcttccaagccaccctccatcctgtggcacacctgggatgcaa 199 Query: 101 ttatcatgctctgggcatgacacaatccttgatcaccatgttcttggctcctgcagagt 159 ||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||| Sbjct: 200 ttatcatgctctgggcatgacaccatccttgatcatccagttcttggctcctgcagagt 258
>gb|AF100768.1|AF100768 Zea mays ZM2LRK pseudogene sequence Length = 2700 Score = 101 bits (51), Expect = 3e-18 Identities = 102/119 (85%) Strand = Plus / Plus Query: 41 atccggttcccgttccggcttttgagccacccaccatcgtgtggtgccccaggcatgcag 100 ||||||||||| || |||||| |||||||| ||||| ||||| | || || ||||| Sbjct: 446 atccggttcccctttcggcttccaagccaccctccatcctgtggcacacctgggatgcaa 505 Query: 101 ttatcatgctctgggcatgacacaatccttgatcaccatgttcttggctcctgcagagt 159 ||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||| Sbjct: 506 ttatcatgctctgggcatgacaccatccttgatcatccagttcttggctcctgcagagt 564
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 87.7 bits (44), Expect = 4e-14 Identities = 125/151 (82%), Gaps = 1/151 (0%) Strand = Plus / Plus Query: 92 ggcatgcagttatcatgctctgggcatgacacaatccttgatcaccatgttcttggctcc 151 ||||||||||| ||||||||||||||||| |||||||| ||||||| ||| | |||||| Sbjct: 788964 ggcatgcagttgtcatgctctgggcatgatacaatcctggatcaccctgtcttaggctcc 789023 Query: 152 tgcagagttaccgagnatctattacaggcaccgtgtcatcaacatcatcccacttgtgga 211 |||| ||| |||| || ||||||||| |||||||||| || ||||| |||||||| Sbjct: 789024 tgcaaagtgaccg-caatatattacaggtaccgtgtcataaatgccatcctccttgtgga 789082 Query: 212 accatcaacgcagtgcccatttcagaagctc 242 | ||||| | | |||||| ||||||||||| Sbjct: 789083 atcatcatcaaattgcccacttcagaagctc 789113 Score = 69.9 bits (35), Expect = 1e-08 Identities = 89/107 (83%) Strand = Plus / Plus Query: 49 cccgttccggcttttgagccacccaccatcgtgtggtgccccaggcatgcagttatcatg 108 |||||||||||||| || || || ||||| || || || || || ||||| |||||||| Sbjct: 865115 cccgttccggctttcgacacaacctccatcatgcggcgcacctgggatgcaattatcatg 865174 Query: 109 ctctgggcatgacacaatccttgatcaccatgttcttggctcctgca 155 |||||| || ||||| ||||| ||||||| ||||||||| ||||||| Sbjct: 865175 ctctggacaagacaccatcctggatcaccctgttcttggttcctgca 865221 Score = 69.9 bits (35), Expect = 1e-08 Identities = 89/107 (83%) Strand = Plus / Plus Query: 49 cccgttccggcttttgagccacccaccatcgtgtggtgccccaggcatgcagttatcatg 108 ||||||||| |||| || || || ||||| || ||||| || || ||||| |||||||| Sbjct: 769591 cccgttccgtctttcgacacaacctccatcatgcggtgcacctggtatgcaattatcatg 769650 Query: 109 ctctgggcatgacacaatccttgatcaccatgttcttggctcctgca 155 |||||| || ||||| ||||| ||||||| ||||||||| ||||||| Sbjct: 769651 ctctggacaagacaccatcctggatcaccctgttcttggttcctgca 769697 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 225 tgcccatttcagaagctcatctcagcaaacttagcaactgatgtgtacaaac 276 |||||| |||||||||||||||| |||| ||| |||||||||||||||||| Sbjct: 923763 tgcccacttcagaagctcatctcgacaaatttatcaactgatgtgtacaaac 923814 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 75 catcgtgtggtgccccaggcatgcagttatcatgctctgggca 117 |||| |||||||| ||||| |||||||||||||| |||||||| Sbjct: 722117 catcttgtggtgctccaggaatgcagttatcatgttctgggca 722075 Score = 48.1 bits (24), Expect = 0.037 Identities = 42/48 (87%) Strand = Plus / Plus Query: 519 aaggcaaatacagtcctcaactctggagagacaacatttacttggcac 566 |||||||||| |||| |||||| ||| || ||| |||||||||||||| Sbjct: 789411 aaggcaaataaagtcatcaactttggtgaaacagcatttacttggcac 789458 Score = 46.1 bits (23), Expect = 0.14 Identities = 62/75 (82%) Strand = Plus / Plus Query: 92 ggcatgcagttatcatgctctgggcatgacacaatccttgatcaccatgttcttggctcc 151 |||||||| || ||||||||||| || ||||| ||||| |||||| |||||||| || Sbjct: 842732 ggcatgcacttgtcatgctctggacaggacaccatcctcaatcacccagttcttggtccc 842791 Query: 152 tgcagagttaccgag 166 |||| ||| |||||| Sbjct: 842792 tgcaaagtaaccgag 842806 Score = 40.1 bits (20), Expect = 8.9 Identities = 59/72 (81%) Strand = Plus / Plus Query: 418 catacatatctgatcttccacgggactgcatggctgtttctaaaggcatccccgtaccct 477 ||||||| |||| |||||||| |||||||| | ||| | ||||||||||| |||||| Sbjct: 789289 catacatgtctgctcttccaccggactgcacagtggttgcgaaaggcatcccaataccct 789348 Query: 478 tcacttatgata 489 || |||||||| Sbjct: 789349 acaattatgata 789360
>gb|AF238471.1|AF238471 Oryza sativa receptor-like kinase (RLG10) gene, complete cds Length = 5000 Score = 87.7 bits (44), Expect = 4e-14 Identities = 125/151 (82%), Gaps = 1/151 (0%) Strand = Plus / Minus Query: 92 ggcatgcagttatcatgctctgggcatgacacaatccttgatcaccatgttcttggctcc 151 ||||||||||| ||||||||||||||||| |||||||| ||||||| ||| | |||||| Sbjct: 427 ggcatgcagttgtcatgctctgggcatgatacaatcctggatcaccctgtcttaggctcc 368 Query: 152 tgcagagttaccgagnatctattacaggcaccgtgtcatcaacatcatcccacttgtgga 211 |||| ||| |||| || ||||||||| |||||||||| || ||||| |||||||| Sbjct: 367 tgcaaagtgaccg-caatatattacaggtaccgtgtcataaatgccatcctccttgtgga 309 Query: 212 accatcaacgcagtgcccatttcagaagctc 242 | ||||| | | |||||| ||||||||||| Sbjct: 308 atcatcatcaaattgcccacttcagaagctc 278 Score = 40.1 bits (20), Expect = 8.9 Identities = 59/72 (81%) Strand = Plus / Minus Query: 418 catacatatctgatcttccacgggactgcatggctgtttctaaaggcatccccgtaccct 477 ||||||| |||| |||||||| |||||||| | ||| | ||||||||||| |||||| Sbjct: 102 catacatgtctgctcttccaccggactgcacagtggttgcgaaaggcatcccaataccct 43 Query: 478 tcacttatgata 489 || |||||||| Sbjct: 42 acaattatgata 31
>gb|AF248493.1|AF248493 Oryza sativa receptor-like kinase (RLG18) gene, complete cds Length = 4499 Score = 87.7 bits (44), Expect = 4e-14 Identities = 125/151 (82%), Gaps = 1/151 (0%) Strand = Plus / Plus Query: 92 ggcatgcagttatcatgctctgggcatgacacaatccttgatcaccatgttcttggctcc 151 ||||||||||| ||||||||||||||||| |||||||| ||||||| ||| | |||||| Sbjct: 1073 ggcatgcagttgtcatgctctgggcatgatacaatcctggatcaccctgtcttaggctcc 1132 Query: 152 tgcagagttaccgagnatctattacaggcaccgtgtcatcaacatcatcccacttgtgga 211 |||| ||| |||| || ||||||||| |||||||||| || ||||| |||||||| Sbjct: 1133 tgcaaagtgaccg-caatatattacaggtaccgtgtcataaatgccatcctccttgtgga 1191 Query: 212 accatcaacgcagtgcccatttcagaagctc 242 | ||||| | | |||||| ||||||||||| Sbjct: 1192 atcatcatcaaattgcccacttcagaagctc 1222 Score = 48.1 bits (24), Expect = 0.037 Identities = 42/48 (87%) Strand = Plus / Plus Query: 519 aaggcaaatacagtcctcaactctggagagacaacatttacttggcac 566 |||||||||| |||| |||||| ||| || ||| |||||||||||||| Sbjct: 1520 aaggcaaataaagtcatcaactttggtgaaacagcatttacttggcac 1567 Score = 40.1 bits (20), Expect = 8.9 Identities = 59/72 (81%) Strand = Plus / Plus Query: 418 catacatatctgatcttccacgggactgcatggctgtttctaaaggcatccccgtaccct 477 ||||||| |||| |||||||| |||||||| | ||| | ||||||||||| |||||| Sbjct: 1398 catacatgtctgctcttccaccggactgcacagtggttgcgaaaggcatcccaataccct 1457 Query: 478 tcacttatgata 489 || |||||||| Sbjct: 1458 acaattatgata 1469
>dbj|AP002867.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0463F06 Length = 144322 Score = 87.7 bits (44), Expect = 4e-14 Identities = 125/151 (82%), Gaps = 1/151 (0%) Strand = Plus / Plus Query: 92 ggcatgcagttatcatgctctgggcatgacacaatccttgatcaccatgttcttggctcc 151 ||||||||||| ||||||||||||||||| |||||||| ||||||| ||| | |||||| Sbjct: 11638 ggcatgcagttgtcatgctctgggcatgatacaatcctggatcaccctgtcttaggctcc 11697 Query: 152 tgcagagttaccgagnatctattacaggcaccgtgtcatcaacatcatcccacttgtgga 211 |||| ||| |||| || ||||||||| |||||||||| || ||||| |||||||| Sbjct: 11698 tgcaaagtgaccg-caatatattacaggtaccgtgtcataaatgccatcctccttgtgga 11756 Query: 212 accatcaacgcagtgcccatttcagaagctc 242 | ||||| | | |||||| ||||||||||| Sbjct: 11757 atcatcatcaaattgcccacttcagaagctc 11787 Score = 69.9 bits (35), Expect = 1e-08 Identities = 89/107 (83%) Strand = Plus / Plus Query: 49 cccgttccggcttttgagccacccaccatcgtgtggtgccccaggcatgcagttatcatg 108 |||||||||||||| || || || ||||| || || || || || ||||| |||||||| Sbjct: 87789 cccgttccggctttcgacacaacctccatcatgcggcgcacctgggatgcaattatcatg 87848 Query: 109 ctctgggcatgacacaatccttgatcaccatgttcttggctcctgca 155 |||||| || ||||| ||||| ||||||| ||||||||| ||||||| Sbjct: 87849 ctctggacaagacaccatcctggatcaccctgttcttggttcctgca 87895 Score = 48.1 bits (24), Expect = 0.037 Identities = 42/48 (87%) Strand = Plus / Plus Query: 519 aaggcaaatacagtcctcaactctggagagacaacatttacttggcac 566 |||||||||| |||| |||||| ||| || ||| |||||||||||||| Sbjct: 12085 aaggcaaataaagtcatcaactttggtgaaacagcatttacttggcac 12132 Score = 46.1 bits (23), Expect = 0.14 Identities = 62/75 (82%) Strand = Plus / Plus Query: 92 ggcatgcagttatcatgctctgggcatgacacaatccttgatcaccatgttcttggctcc 151 |||||||| || ||||||||||| || ||||| ||||| |||||| |||||||| || Sbjct: 65406 ggcatgcacttgtcatgctctggacaggacaccatcctcaatcacccagttcttggtccc 65465 Query: 152 tgcagagttaccgag 166 |||| ||| |||||| Sbjct: 65466 tgcaaagtaaccgag 65480 Score = 40.1 bits (20), Expect = 8.9 Identities = 59/72 (81%) Strand = Plus / Plus Query: 418 catacatatctgatcttccacgggactgcatggctgtttctaaaggcatccccgtaccct 477 ||||||| |||| |||||||| |||||||| | ||| | ||||||||||| |||||| Sbjct: 11963 catacatgtctgctcttccaccggactgcacagtggttgcgaaaggcatcccaataccct 12022 Query: 478 tcacttatgata 489 || |||||||| Sbjct: 12023 acaattatgata 12034
>dbj|AP003338.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1212_B09 Length = 130728 Score = 87.7 bits (44), Expect = 4e-14 Identities = 125/151 (82%), Gaps = 1/151 (0%) Strand = Plus / Plus Query: 92 ggcatgcagttatcatgctctgggcatgacacaatccttgatcaccatgttcttggctcc 151 ||||||||||| ||||||||||||||||| |||||||| ||||||| ||| | |||||| Sbjct: 66164 ggcatgcagttgtcatgctctgggcatgatacaatcctggatcaccctgtcttaggctcc 66223 Query: 152 tgcagagttaccgagnatctattacaggcaccgtgtcatcaacatcatcccacttgtgga 211 |||| ||| |||| || ||||||||| |||||||||| || ||||| |||||||| Sbjct: 66224 tgcaaagtgaccg-caatatattacaggtaccgtgtcataaatgccatcctccttgtgga 66282 Query: 212 accatcaacgcagtgcccatttcagaagctc 242 | ||||| | | |||||| ||||||||||| Sbjct: 66283 atcatcatcaaattgcccacttcagaagctc 66313 Score = 69.9 bits (35), Expect = 1e-08 Identities = 89/107 (83%) Strand = Plus / Plus Query: 49 cccgttccggcttttgagccacccaccatcgtgtggtgccccaggcatgcagttatcatg 108 ||||||||| |||| || || || ||||| || ||||| || || ||||| |||||||| Sbjct: 46791 cccgttccgtctttcgacacaacctccatcatgcggtgcacctggtatgcaattatcatg 46850 Query: 109 ctctgggcatgacacaatccttgatcaccatgttcttggctcctgca 155 |||||| || ||||| ||||| ||||||| ||||||||| ||||||| Sbjct: 46851 ctctggacaagacaccatcctggatcaccctgttcttggttcctgca 46897 Score = 48.1 bits (24), Expect = 0.037 Identities = 42/48 (87%) Strand = Plus / Plus Query: 519 aaggcaaatacagtcctcaactctggagagacaacatttacttggcac 566 |||||||||| |||| |||||| ||| || ||| |||||||||||||| Sbjct: 66611 aaggcaaataaagtcatcaactttggtgaaacagcatttacttggcac 66658 Score = 46.1 bits (23), Expect = 0.14 Identities = 62/75 (82%) Strand = Plus / Plus Query: 92 ggcatgcagttatcatgctctgggcatgacacaatccttgatcaccatgttcttggctcc 151 |||||||| || ||||||||||| || ||||| ||||| |||||| |||||||| || Sbjct: 119932 ggcatgcacttgtcatgctctggacaggacaccatcctcaatcacccagttcttggtccc 119991 Query: 152 tgcagagttaccgag 166 |||| ||| |||||| Sbjct: 119992 tgcaaagtaaccgag 120006 Score = 40.1 bits (20), Expect = 8.9 Identities = 59/72 (81%) Strand = Plus / Plus Query: 418 catacatatctgatcttccacgggactgcatggctgtttctaaaggcatccccgtaccct 477 ||||||| |||| |||||||| |||||||| | ||| | ||||||||||| |||||| Sbjct: 66489 catacatgtctgctcttccaccggactgcacagtggttgcgaaaggcatcccaataccct 66548 Query: 478 tcacttatgata 489 || |||||||| Sbjct: 66549 acaattatgata 66560
>gb|AF085169.1|AF085169 Triticum aestivum ARK protein and LRk-type protein genes, partial cds Length = 3919 Score = 79.8 bits (40), Expect = 1e-11 Identities = 67/76 (88%) Strand = Plus / Plus Query: 80 tgtggtgccccaggcatgcagttatcatgctctgggcatgacacaatccttgatcaccat 139 |||||||| ||||| |||||||||||||||||||| || ||||| ||||| |||||| Sbjct: 3699 tgtggtgcaccaggtatgcagttatcatgctctggacaggacaccatcctgtatcaccca 3758 Query: 140 gttcttggctcctgca 155 |||||||||||||||| Sbjct: 3759 gttcttggctcctgca 3774 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 225 tgcccatttcagaagctcatctcagcaaacttagcaactgatgtgtacaaac 276 |||||| |||||| |||||||||||||| || |||||||||||||||||| Sbjct: 3843 tgcccacttcagatactcatctcagcaaatctatcaactgatgtgtacaaac 3894
>gb|AF238474.1|AF238474 Oryza sativa receptor-like kinase (RLG16) gene, complete cds Length = 4500 Score = 69.9 bits (35), Expect = 1e-08 Identities = 89/107 (83%) Strand = Plus / Plus Query: 49 cccgttccggcttttgagccacccaccatcgtgtggtgccccaggcatgcagttatcatg 108 ||||||||| |||| || || || ||||| || ||||| || || ||||| |||||||| Sbjct: 691 cccgttccgtctttcgacacaacctccatcatgcggtgcacctggtatgcaattatcatg 750 Query: 109 ctctgggcatgacacaatccttgatcaccatgttcttggctcctgca 155 |||||| || ||||| ||||| ||||||| ||||||||| ||||||| Sbjct: 751 ctctggacaagacaccatcctggatcaccctgttcttggttcctgca 797
>gb|AF237568.1|AF237568 Oryza sativa receptor-like protein kinase (RLG2) gene, complete cds Length = 4000 Score = 69.9 bits (35), Expect = 1e-08 Identities = 89/107 (83%) Strand = Plus / Plus Query: 49 cccgttccggcttttgagccacccaccatcgtgtggtgccccaggcatgcagttatcatg 108 |||||||||||||| || || || ||||| || || || || || ||||| |||||||| Sbjct: 531 cccgttccggctttcgacacaacctccatcatgcggcgcacctgggatgcaattatcatg 590 Query: 109 ctctgggcatgacacaatccttgatcaccatgttcttggctcctgca 155 |||||| || ||||| ||||| ||||||| ||||||||| ||||||| Sbjct: 591 ctctggacaagacaccatcctggatcaccctgttcttggttcctgca 637
>dbj|AP002747.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698G03 Length = 147857 Score = 69.9 bits (35), Expect = 1e-08 Identities = 89/107 (83%) Strand = Plus / Plus Query: 49 cccgttccggcttttgagccacccaccatcgtgtggtgccccaggcatgcagttatcatg 108 |||||||||||||| || || || ||||| || || || || || ||||| |||||||| Sbjct: 560 cccgttccggctttcgacacaacctccatcatgcggcgcacctgggatgcaattatcatg 619 Query: 109 ctctgggcatgacacaatccttgatcaccatgttcttggctcctgca 155 |||||| || ||||| ||||| ||||||| ||||||||| ||||||| Sbjct: 620 ctctggacaagacaccatcctggatcaccctgttcttggttcctgca 666 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 225 tgcccatttcagaagctcatctcagcaaacttagcaactgatgtgtacaaac 276 |||||| |||||||||||||||| |||| ||| |||||||||||||||||| Sbjct: 59208 tgcccacttcagaagctcatctcgacaaatttatcaactgatgtgtacaaac 59259
>dbj|AK120121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013025P07, full insert sequence Length = 3392 Score = 69.9 bits (35), Expect = 1e-08 Identities = 89/107 (83%) Strand = Plus / Plus Query: 49 cccgttccggcttttgagccacccaccatcgtgtggtgccccaggcatgcagttatcatg 108 ||||||||| |||| || || || ||||| || ||||| || || ||||| |||||||| Sbjct: 261 cccgttccgtctttcgacacaacctccatcatgcggtgcacctggtatgcaattatcatg 320 Query: 109 ctctgggcatgacacaatccttgatcaccatgttcttggctcctgca 155 |||||| || ||||| ||||| ||||||| ||||||||| ||||||| Sbjct: 321 ctctggacaagacaccatcctggatcaccctgttcttggttcctgca 367
>gb|AF164021.1|AF164021 Oryza sativa clone GRLG4 receptor kinase gene, complete cds Length = 5112 Score = 69.9 bits (35), Expect = 1e-08 Identities = 89/107 (83%) Strand = Plus / Plus Query: 49 cccgttccggcttttgagccacccaccatcgtgtggtgccccaggcatgcagttatcatg 108 ||||||||| |||| || || || ||||| || ||||| || || ||||| |||||||| Sbjct: 1584 cccgttccgtctttcgacacaacctccatcatgcggtgcacctggtatgcaattatcatg 1643 Query: 109 ctctgggcatgacacaatccttgatcaccatgttcttggctcctgca 155 |||||| || ||||| ||||| ||||||| ||||||||| ||||||| Sbjct: 1644 ctctggacaagacaccatcctggatcaccctgttcttggttcctgca 1690
>ref|XM_549899.1| Oryza sativa (japonica cultivar-group), mRNA Length = 847 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 49 cccgttccggcttttgagccacccaccatcgtgtggtgccccaggcatgcagttatcatg 108 ||||||||| |||| || || || ||||| || ||||| || || ||||| |||||||| Sbjct: 540 cccgttccgtctttcgacacaacctccatcatgcggtgcacctggtatgcaattatcatg 481 Query: 109 ctctgggcatgacacaatccttgatcaccatgttcttggctcct 152 |||||| || ||||| ||||| ||||||| ||||||||| |||| Sbjct: 480 ctctggacaagacaccatcctggatcaccctgttcttggttcct 437
>dbj|AK099453.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022K11, full insert sequence Length = 847 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 49 cccgttccggcttttgagccacccaccatcgtgtggtgccccaggcatgcagttatcatg 108 ||||||||| |||| || || || ||||| || ||||| || || ||||| |||||||| Sbjct: 540 cccgttccgtctttcgacacaacctccatcatgcggtgcacctggtatgcaattatcatg 481 Query: 109 ctctgggcatgacacaatccttgatcaccatgttcttggctcct 152 |||||| || ||||| ||||| ||||||| ||||||||| |||| Sbjct: 480 ctctggacaagacaccatcctggatcaccctgttcttggttcct 437
>ref|NM_183554.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1854 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 75 catcgtgtggtgccccaggcatgcagttatcatgctctgggca 117 |||| |||||||| ||||| |||||||||||||| |||||||| Sbjct: 167 catcttgtggtgctccaggaatgcagttatcatgttctgggca 209
>gb|AF044260.1| Oryza sativa (japonica cultivar-group) clone OsRLK8 receptor serine/threonine kinase mRNA, complete cds Length = 2092 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 75 catcgtgtggtgccccaggcatgcagttatcatgctctgggca 117 |||| |||||||| ||||| |||||||||||||| |||||||| Sbjct: 172 catcttgtggtgctccaggaatgcagttatcatgttctgggca 214
>gb|AF077130.1| Oryza sativa (indica cultivar-group) clone OsGRLK8 receptor-like protein kinase gene, complete cds Length = 4392 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 75 catcgtgtggtgccccaggcatgcagttatcatgctctgggca 117 |||| |||||||| ||||| |||||||||||||| |||||||| Sbjct: 1880 catcttgtggtgctccaggaatgcagttatcatgttctgggca 1922
>dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0032H19 Length = 126434 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 75 catcgtgtggtgccccaggcatgcagttatcatgctctgggca 117 |||| |||||||| ||||| |||||||||||||| |||||||| Sbjct: 105861 catcttgtggtgctccaggaatgcagttatcatgttctgggca 105819
>ref|NM_184075.2| Oryza sativa (japonica cultivar-group), mRNA Length = 2005 Score = 46.1 bits (23), Expect = 0.14 Identities = 62/75 (82%) Strand = Plus / Plus Query: 92 ggcatgcagttatcatgctctgggcatgacacaatccttgatcaccatgttcttggctcc 151 |||||||| || ||||||||||| || ||||| ||||| |||||| |||||||| || Sbjct: 204 ggcatgcacttgtcatgctctggacaggacaccatcctcaatcacccagttcttggtccc 263 Query: 152 tgcagagttaccgag 166 |||| ||| |||||| Sbjct: 264 tgcaaagtaaccgag 278
>dbj|AK121074.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061O14, full insert sequence Length = 2005 Score = 46.1 bits (23), Expect = 0.14 Identities = 62/75 (82%) Strand = Plus / Plus Query: 92 ggcatgcagttatcatgctctgggcatgacacaatccttgatcaccatgttcttggctcc 151 |||||||| || ||||||||||| || ||||| ||||| |||||| |||||||| || Sbjct: 204 ggcatgcacttgtcatgctctggacaggacaccatcctcaatcacccagttcttggtccc 263 Query: 152 tgcagagttaccgag 166 |||| ||| |||||| Sbjct: 264 tgcaaagtaaccgag 278
>gb|AY029703.1| Triticum aestivum receptor-like kinase (Rlk-R1) gene, partial cds Length = 2125 Score = 44.1 bits (22), Expect = 0.57 Identities = 40/46 (86%) Strand = Plus / Plus Query: 105 catgctctgggcatgacacaatccttgatcaccatgttcttggctc 150 ||||||||||||| ||||| ||||| | ||||| ||||||||||| Sbjct: 1 catgctctgggcaagacaccatcctagttcacccagttcttggctc 46
>gb|AC123824.4| Mus musculus BAC clone RP24-84D16 from chromosome 12, complete sequence Length = 205607 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 569 caataacattactgatgtctg 589 ||||||||||||||||||||| Sbjct: 42554 caataacattactgatgtctg 42574
>gb|AC125355.4| Mus musculus BAC clone RP23-183C14 from 12, complete sequence Length = 180423 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 569 caataacattactgatgtctg 589 ||||||||||||||||||||| Sbjct: 2602 caataacattactgatgtctg 2582
>gb|AC147712.17| Medicago truncatula clone mth2-34f1, complete sequence Length = 136410 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 257 agcaactgatgtgtacaaacaacct 281 |||||||||||||||||| |||||| Sbjct: 73238 agcaactgatgtgtacaaccaacct 73262
>gb|AC093368.4| Homo sapiens chromosome 8, clone RP11-783P22, complete sequence Length = 158535 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaagc 638 ||||||||||||||||||||| Sbjct: 119826 tgtggattcagctcacaaagc 119846 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 123805 tgtggattcagctcacaaag 123824 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 615 cattgtggattcagctcaca 634 |||||||||||||||||||| Sbjct: 72856 cattgtggattcagctcaca 72837
>gb|AC104566.3| Homo sapiens chromosome 8, clone RP11-17A22, complete sequence Length = 115732 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 618 tgtggattcagctcacaaagc 638 ||||||||||||||||||||| Sbjct: 38943 tgtggattcagctcacaaagc 38923 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 615 cattgtggattcagctcaca 634 |||||||||||||||||||| Sbjct: 85913 cattgtggattcagctcaca 85932 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 34964 tgtggattcagctcacaaag 34945
>gb|AC079460.19| Homo sapiens 12 BAC RP11-297L6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175994 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaagc 638 ||||||||||||||||||||| Sbjct: 2210 tgtggattcagctcacaaagc 2230 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 10985 tgtggattcagctcacaaag 11004
>gb|AC158162.13| Mus musculus chromosome 3, clone RP23-335E20, complete sequence Length = 206835 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 613 ggcattgtggattcagctca 632 |||||||||||||||||||| Sbjct: 64231 ggcattgtggattcagctca 64250
>gb|AC146328.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0018J01, complete sequence Length = 82510 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 cttgatcaccatgttcttgg 147 |||||||||||||||||||| Sbjct: 27970 cttgatcaccatgttcttgg 27989
>gb|AC147140.4| Pan troglodytes BAC clone CH251-329N7 from Y, complete sequence Length = 149061 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 66918 tgtggattcagctcacaaag 66937 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 65330 tgtggattcagctcacaaag 65349
>gb|AC147119.2| Pan troglodytes BAC clone CH251-518N19 from Y, complete sequence Length = 241976 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 61325 tgtggattcagctcacaaag 61344 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 59741 tgtggattcagctcacaaag 59760
>gb|AC147112.2| Pan troglodytes BAC clone CH251-555D17 from Y, complete sequence Length = 183344 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 13474 tgtggattcagctcacaaag 13455
>emb|AL512884.15| Human DNA sequence from clone RP13-775K13 on chromosome Xp11.1-11.22, complete sequence Length = 157064 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 63345 tgtggattcagctcacaaag 63364 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 56153 tgtggattcagctcacaaag 56172
>emb|AL354999.17| Human DNA sequence from clone RP11-531B22 on chromosome 13, complete sequence Length = 82944 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 acccaccatcgtgtggtgcc 88 |||||||||||||||||||| Sbjct: 67038 acccaccatcgtgtggtgcc 67019
>emb|AL161722.9| Human DNA sequence from clone RP11-497J7 on chromosome X Contains a melanoma antigen family B 4 pseudogene and a nuclear transcription factor Y, gamma (NFYC) pseudogene, complete sequence Length = 154594 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 ttgttcaagagatttcacac 333 |||||||||||||||||||| Sbjct: 58884 ttgttcaagagatttcacac 58903
>gb|AC091189.4| Homo sapiens chromosome 8, clone RP11-606D13, complete sequence Length = 174458 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 161054 tgtggattcagctcacaaag 161035 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 82098 tgtggattcagctcacaaag 82117
>emb|BX510914.13| Zebrafish DNA sequence from clone DKEY-4D9 in linkage group 2, complete sequence Length = 108843 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 tttcacaccagtagatcaat 345 |||||||||||||||||||| Sbjct: 1713 tttcacaccagtagatcaat 1694
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 10289270 tgtggattcagctcacaaag 10289289 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 10287686 tgtggattcagctcacaaag 10287705 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 5383413 tgtggattcagctcacaaag 5383394 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 3971731 tgtggattcagctcacaaag 3971712 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 3970143 tgtggattcagctcacaaag 3970124
>gb|AC113134.5| Homo sapiens chromosome 8, clone RP11-1031I13, complete sequence Length = 178804 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 150789 tgtggattcagctcacaaag 150808 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 5537 tgtggattcagctcacaaag 5556 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 2836 tgtggattcagctcacaaag 2855
>gb|AC105226.4| Homo sapiens chromosome 8, clone RP11-970F14, complete sequence Length = 107318 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 87851 tgtggattcagctcacaaag 87870
>gb|AC174482.4| Pan troglodytes BAC clone CH251-527O19 from chromosome y, complete sequence Length = 189332 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 8673 tgtggattcagctcacaaag 8692 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 7085 tgtggattcagctcacaaag 7104
>gb|AC026005.7| Homo sapiens chromosome 8, clone RP11-470I23, complete sequence Length = 173839 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 143528 tgtggattcagctcacaaag 143547 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 140827 tgtggattcagctcacaaag 140846 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 97054 tgtggattcagctcacaaag 97035 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 83519 tgtggattcagctcacaaag 83538 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 71560 tgtggattcagctcacaaag 71579
>gb|AC019089.6| Homo sapiens BAC clone RP11-370L14 from 4, complete sequence Length = 177160 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 tagccaattctggtatatgg 405 |||||||||||||||||||| Sbjct: 154453 tagccaattctggtatatgg 154472
>gb|AC008618.7| Homo sapiens chromosome 5 clone CTB-146E17, complete sequence Length = 139029 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 567 ttcaataacattactgatgt 586 |||||||||||||||||||| Sbjct: 86850 ttcaataacattactgatgt 86831
>dbj|AB177878.1| Python regius mitochondrial DNA, complete genome Length = 17245 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 gtcatcaacatcatcccact 205 |||||||||||||||||||| Sbjct: 13200 gtcatcaacatcatcccact 13219
>emb|BX469891.9| Zebrafish DNA sequence from clone CH211-226B21 in linkage group 2, complete sequence Length = 175261 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 tttcacaccagtagatcaat 345 |||||||||||||||||||| Sbjct: 174974 tttcacaccagtagatcaat 174955
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 cttgatcaccatgttcttgg 147 |||||||||||||||||||| Sbjct: 4192840 cttgatcaccatgttcttgg 4192821
>gb|AC109490.3| Homo sapiens chromosome 16 clone RP11-65B9, complete sequence Length = 161024 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 122183 tgtggattcagctcacaaag 122202
>gb|AC146461.4| Pan troglodytes BAC clone CH251-49H18 from chromosome y, complete sequence Length = 170814 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 45144 tgtggattcagctcacaaag 45125
>gb|AC116553.2| Homo sapiens chromosome 16 clone RP11-43P5, complete sequence Length = 173692 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 6390 tgtggattcagctcacaaag 6409
>gb|AC008565.6|AC008565 Homo sapiens chromosome 5 clone CTC-538F12, complete sequence Length = 167086 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 567 ttcaataacattactgatgt 586 |||||||||||||||||||| Sbjct: 36424 ttcaataacattactgatgt 36443
>gb|AF315326.1|AF315326 Brassica napus profilin mRNA, complete cds Length = 672 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 gatcaccatgttcttggctcctgc 154 ||||||||||| |||||||||||| Sbjct: 282 gatcaccatgtacttggctcctgc 259
>gb|AC137719.5| Homo sapiens chromosome 8, clone RP11-260I22, complete sequence Length = 171164 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgtggattcagctcacaaag 637 |||||||||||||||||||| Sbjct: 91951 tgtggattcagctcacaaag 91970
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 cttgatcaccatgttcttgg 147 |||||||||||||||||||| Sbjct: 4201534 cttgatcaccatgttcttgg 4201515 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,927,523 Number of Sequences: 3902068 Number of extensions: 4927523 Number of successful extensions: 81516 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80480 Number of HSP's gapped (non-prelim): 1022 length of query: 652 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 629 effective length of database: 17,143,297,704 effective search space: 10783134255816 effective search space used: 10783134255816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)