ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baalo21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ABP1_TOBAC (P33490) Auxin-binding protein T85 precursor (ABP) 30 2.2
2ABP2_TOBAC (P33491) Auxin-binding protein T92 precursor (ABP) 28 8.4

>ABP1_TOBAC (P33490) Auxin-binding protein T85 precursor (ABP)|
          Length = 187

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +2

Query: 5   AHLCFATASSXSCCLL-VPLKNQPA*LPQARPGTSSSEPLRGVRIHSTTSVCLLHGFXLL 181
           A L FATA +  C +  +PL    + LPQ   G S          H+T +  +LHG   +
Sbjct: 10  AVLLFATAEASQCSINGLPLVRNISELPQENYGRSGLS-------HTTIAGSVLHGMKEI 62

Query: 182 PCWIQ 196
             W+Q
Sbjct: 63  EVWLQ 67



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>ABP2_TOBAC (P33491) Auxin-binding protein T92 precursor (ABP)|
          Length = 187

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 17  FATASSXSCCLL-VPLKNQPA*LPQARPGTSSSEPLRGVRIHSTTSVCLLHGFXLLPCWI 193
           FATA +  C +  +PL    + LPQ   G S          H+T +  +LHG   +  W+
Sbjct: 14  FATAEASHCSINGLPLVRNISELPQENYGRSGLS-------HTTIAGSVLHGMKEIEVWL 66

Query: 194 Q 196
           Q
Sbjct: 67  Q 67


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,032,154
Number of Sequences: 219361
Number of extensions: 1219406
Number of successful extensions: 2684
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2683
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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