ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baalo19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FTSK_LACPL (Q88V72) DNA translocase ftsK 30 4.2
2CABIN_RAT (O88480) Calcineurin-binding protein Cabin 1 (Calcineu... 30 7.1
3COX10_MAGGR (P0C150) Protoheme IX farnesyltransferase, mitochond... 30 7.1
4ADA15_HUMAN (Q13444) ADAM 15 precursor (EC 3.4.24.-) (A disinteg... 29 9.3
5RL4B_ARATH (Q9SF40) 60S ribosomal protein L4-2 (L1) 29 9.3
6IWS1_YARLI (Q6CGB2) Transcription factor IWS1 29 9.3

>FTSK_LACPL (Q88V72) DNA translocase ftsK|
          Length = 802

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 163 PXGSVTMSSAPWSTSSGTVXPAEVLLQVRSQPEDL 59
           P  +V  S+AP  T+SGT  P      V S P DL
Sbjct: 247 PTSTVPQSAAPAETTSGTSAPDSAASAVTSSPADL 281



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>CABIN_RAT (O88480) Calcineurin-binding protein Cabin 1 (Calcineurin inhibitor)|
            (CAIN)
          Length = 2182

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 342  LPHPTDRPARDGSDPGAQPVDDVAQ-HRLLLGLD 244
            LPHP   P  DGS PG +P   V   H+L +  D
Sbjct: 1703 LPHPKKLPLADGSGPGPEPGGKVGPLHQLPVATD 1736



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>COX10_MAGGR (P0C150) Protoheme IX farnesyltransferase, mitochondrial precursor|
           (EC 2.5.1.-) (Heme O synthase)
          Length = 552

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +1

Query: 322 PVRGMRQAGRITSAELVGDGRNLPSPTVMTRPVRPPAPLASEDGE 456
           P    RQA R T+ +      N PS    T PV PP   A+  GE
Sbjct: 137 PPHRRRQAARRTAEQAASASSNAPSEAAQTTPVTPPP--AAPSGE 179



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>ADA15_HUMAN (Q13444) ADAM 15 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 15) (Metalloproteinase-like,
           disintegrin-like, and cysteine-rich protein 15) (MDC-15)
           (Metalloprotease RGD disintegrin protein) (Metargidin)
          Length = 814

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 316 RRPVRGMRQAGRITSAELVGDGRNLPSPTVMTRPVRPPAPLAS 444
           R+P+    Q GR  S +L G G  +P   V +RP  PP  ++S
Sbjct: 770 RKPLPADPQ-GRCPSGDLPGPGAGIPPLVVPSRPAPPPPTVSS 811



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>RL4B_ARATH (Q9SF40) 60S ribosomal protein L4-2 (L1)|
          Length = 406

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 19/53 (35%), Positives = 31/53 (58%)
 Frame = +1

Query: 226 LLHDLLIEPEKEAVLGDIVDWLRPRI*SITRRPVRGMRQAGRITSAELVGDGR 384
           +L D++  P    V  DIV+++  +I + +R+P    ++AG  TSAE  G GR
Sbjct: 28  VLPDVMTAP----VRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGR 76



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>IWS1_YARLI (Q6CGB2) Transcription factor IWS1|
          Length = 414

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -2

Query: 372 DELGRSDPTRLPHPTDRPARDGSDPGAQPVDDVAQHRLLLGLDEEVVQQAVVEPD 208
           +++G +       P + PA   +   A P DD      L  LDE+ ++ A +E D
Sbjct: 32  EDVGEAAEEASEAPEEAPAEAATTTEAAPADDDEDDSDLSDLDEDEIKNAAIEDD 86


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,650,515
Number of Sequences: 219361
Number of extensions: 1207482
Number of successful extensions: 4645
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4637
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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