ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baalo19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence 176 6e-41
2emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 48 0.034
3gb|AE009409.1| Agrobacterium tumefaciens str. C58 linear chromos... 46 0.13
4gb|AE008205.1| Agrobacterium tumefaciens str. C58 linear chromos... 46 0.13
5gb|AY325563.1| Uncultured bacterium clone GA54 putative dissimil... 46 0.13
6gb|AE012358.1| Xanthomonas campestris pv. campestris str. ATCC 3... 46 0.13
7gb|DQ010708.1| Unidentified bacterium clone 19g65 membrane bound... 46 0.13
8gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 46 0.13
9gb|AY955184.1| Uncultured bacterium clone GRAMJ4 putative dissim... 46 0.13
10gb|DQ233276.1| Uncultured bacterium clone 3_21 dissimilatory nit... 44 0.53
11gb|AY453381.1| Uncultured bacterium clone F89 dissimilatory memb... 44 0.53
12gb|DQ481169.1| Uncultured bacterium clone LT-075_12 membrane bou... 44 0.53
13gb|AF377946.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
14gb|AC147426.2| Oryza sativa chromosome 3 B1377B10 genomic seque... 42 2.1
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.1
16ref|XM_538685.2| PREDICTED: Canis familiaris similar to Cyclin-d... 42 2.1
17gb|CP000133.1| Rhizobium etli CFN 42, complete genome 42 2.1
18dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
19ref|NM_214098.1| Sus scrofa interleukin-18 receptor alpha chain ... 42 2.1
20dbj|AK120822.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
21emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 42 2.1
22emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 42 2.1
23dbj|AB079258.1| Sus scrofa IL-18Ra mRNA for interleukin-18 recep... 42 2.1
24gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 8.3
25ref|NM_197234.1| Oryza sativa (japonica cultivar-group) hypothet... 40 8.3
26gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome... 40 8.3
27gb|AE009008.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 8.3
28gb|DQ481148.1| Uncultured bacterium clone LT-600_05 membrane bou... 40 8.3
29ref|XM_802828.1| Trypanosoma cruzi strain CL Brener DNA polymera... 40 8.3
30ref|XM_802830.1| Trypanosoma cruzi strain CL Brener DNA polymera... 40 8.3
31ref|XM_804540.1| Trypanosoma cruzi strain CL Brener DNA polymera... 40 8.3
32ref|XM_804542.1| Trypanosoma cruzi strain CL Brener DNA polymera... 40 8.3
33emb|CR732210.2|CNS0GRX3 Tetraodon nigroviridis full-length cDNA 40 8.3
34emb|CR650047.2|CNS0F0JP Tetraodon nigroviridis full-length cDNA 40 8.3
35emb|CR639895.2|CNS0ESPP Tetraodon nigroviridis full-length cDNA 40 8.3
36gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 8.3
37gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 8.3
38gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 geno... 40 8.3
39emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 40 8.3
40dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 8.3
41gb|AE011933.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 8.3
42gb|AE012387.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 8.3
43gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 8.3
44gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold 40 8.3
45dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
46dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
47dbj|AP005741.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
48gb|AF191325.1|AF191325 Mus musculus SRY-related protein SOX 8 (S... 40 8.3
49dbj|AK060316.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.3
50gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 8.3
51gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.3
52gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 8.3
53gb|AC154418.2| Mus musculus BAC clone RP24-209I7 from chromosome... 40 8.3 
>gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence
          Length = 152439

 Score =  176 bits (89), Expect = 6e-41
 Identities = 233/279 (83%), Gaps = 2/279 (0%)
 Strand = Plus / Minus

                                                                          
Query: 20     ctggtgttcacgggctccatccgggtgcggacggggtacgagatcctccggctgactgcg 79
              ||||||||||||||| ||||||| ||| ||||||| |||||||||||||| |||||  ||
Sbjct: 108825 ctggtgttcacgggcgccatccgcgtgaggacgggctacgagatcctccgcctgacgtcg 108766

                                                                          
Query: 80     tacctgcagcagcacctccgcaggnatcacggtgccgctgctggtgctccacggcgccga 139
              ||||||||||||||||| | |  | |||   || |||||||||||| | |||||||||||
Sbjct: 108765 tacctgcagcagcacctgcac-cgcatcgacgtcccgctgctggtgatgcacggcgccga 108707

                                                                          
Query: 140    cgacatggtgaccgacccggnaggggtcgcggcggctgcaccgggaggcctccaccccgg 199
              |||| |||||||||||||   |||| ||||||  |||| ||  | |||||||| || |||
Sbjct: 108706 cgacctggtgaccgaccc-caagggctcgcgggcgctgtacgagcaggcctcctccgcgg 108648

                                                                          
Query: 200    acaaggccatccggctctacgacggcctgctgcacgacctcctcatcgagcccgagaagg 259
              ||||| || ||  |||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 108647 acaagtccctcaagctctacgacgggctgctgcacgacctcctgatcgagcccgagaagg 108588

                                                     
Query: 260    aggcggtgctgggcgacatcgtcgactggctgcgcccca 298
              |   |||| ||| ||||||||| |  |||||| ||||||
Sbjct: 108587 acaaggtgatggacgacatcgtggcgtggctgagcccca 108549
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                               
Query: 113     gccgctgctggtgctccacggcgccgacgaca 144
               |||||||||||||||| |||| ||||||||||
Sbjct: 3475573 gccgctgctggtgctcaacggtgccgacgaca 3475542
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>gb|AE009409.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 179 of
            187 of the complete sequence
          Length = 12457

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 262  gcggtgctgggcgacatcgtcga 284
            |||||||||||||||||||||||
Sbjct: 5958 gcggtgctgggcgacatcgtcga 5936
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>gb|AE008205.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 9 of
            187 of the complete sequence
          Length = 12850

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 262  gcggtgctgggcgacatcgtcga 284
            |||||||||||||||||||||||
Sbjct: 3714 gcggtgctgggcgacatcgtcga 3736
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>gb|AY325563.1| Uncultured bacterium clone GA54 putative dissimilatory
           membrane-bound nitrate reductase (narG) gene, partial
           cds
          Length = 653

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 314 cgcgccggccggtccgtgggatg 336
           |||||||||||||||||||||||
Sbjct: 168 cgcgccggccggtccgtgggatg 190
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>gb|AE012358.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 266
            of 460 of the complete genome
          Length = 11304

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 218  acgacggcctgctgcacgacctc 240
            |||||||||||||||||||||||
Sbjct: 3763 acgacggcctgctgcacgacctc 3741
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>gb|DQ010708.1| Unidentified bacterium clone 19g65 membrane bound nitrate reductase
           (narG) gene, partial cds
          Length = 653

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 314 cgcgccggccggtccgtgggatg 336
           |||||||||||||||||||||||
Sbjct: 168 cgcgccggccggtccgtgggatg 190
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 218     acgacggcctgctgcacgacctc 240
               |||||||||||||||||||||||
Sbjct: 1980049 acgacggcctgctgcacgacctc 1980071



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 113     gccgctgctggtgctccacggcgccgacgaca 144
               |||| ||||||||||| |||||||||| ||||
Sbjct: 1663014 gccggtgctggtgctcaacggcgccgatgaca 1663045
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>gb|AY955184.1| Uncultured bacterium clone GRAMJ4 putative dissimilatory
           membrane-bound nitrate reductase (narG) gene, partial
           cds
          Length = 653

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 314 cgcgccggccggtccgtgggatg 336
           |||||||||||||||||||||||
Sbjct: 168 cgcgccggccggtccgtgggatg 190
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>gb|DQ233276.1| Uncultured bacterium clone 3_21 dissimilatory nitrate-reductase
           (narG) gene, partial cds
          Length = 653

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 315 gcgccggccggtccgtgggatg 336
           ||||||||||||||||||||||
Sbjct: 169 gcgccggccggtccgtgggatg 190
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>gb|AY453381.1| Uncultured bacterium clone F89 dissimilatory membrane-bound nitrate
           reductase (narG) gene, partial cds
          Length = 655

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 315 gcgccggccggtccgtgggatg 336
           ||||||||||||||||||||||
Sbjct: 169 gcgccggccggtccgtgggatg 190
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>gb|DQ481169.1| Uncultured bacterium clone LT-075_12 membrane bound nitrate
           reductase (narG) gene, partial cds
          Length = 654

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 315 gcgccggccggtccgtgggatg 336
           ||||||||||||||||||||||
Sbjct: 169 gcgccggccggtccgtgggatg 190
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>gb|AF377946.3| Oryza sativa (japonica cultivar-group) chromosome 3, BAC clone
              OSJNBa0031O09, complete sequence
          Length = 161339

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 241    ctcatcgagcccgagaaggag 261
              |||||||||||||||||||||
Sbjct: 122323 ctcatcgagcccgagaaggag 122303
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>gb|AC147426.2| Oryza sativa chromosome 3  B1377B10 genomic sequence, complete sequence
          Length = 184366

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 241   ctcatcgagcccgagaaggag 261
             |||||||||||||||||||||
Sbjct: 40306 ctcatcgagcccgagaaggag 40286
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 241      ctcatcgagcccgagaaggag 261
                |||||||||||||||||||||
Sbjct: 28857011 ctcatcgagcccgagaaggag 28856991
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>ref|XM_538685.2| PREDICTED: Canis familiaris similar to Cyclin-dependent kinase 4
           inhibitor A (CDK4I) (p16-INK4) (p16-INK4a) (Multiple
           tumor suppressor 1) (MTS1) (LOC481563), mRNA
          Length = 255

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 116 gctgctggtgctccacggcgccgac 140
           ||||||| |||||||||||||||||
Sbjct: 27  gctgctgctgctccacggcgccgac 51
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 271     ggcgacatcgtcgactggctg 291
               |||||||||||||||||||||
Sbjct: 3183803 ggcgacatcgtcgactggctg 3183783
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 241      ctcatcgagcccgagaaggag 261
                |||||||||||||||||||||
Sbjct: 28948433 ctcatcgagcccgagaaggag 28948413
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>ref|NM_214098.1| Sus scrofa interleukin-18 receptor alpha chain (IL-18RA), mRNA
          Length = 1620

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 584  gacagagatttctctgctttc 604
            |||||||||||||||||||||
Sbjct: 1514 gacagagatttctctgctttc 1494
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>dbj|AK120822.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019A20, full
            insert sequence
          Length = 1702

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 241  ctcatcgagcccgagaaggag 261
            |||||||||||||||||||||
Sbjct: 1188 ctcatcgagcccgagaaggag 1208
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 107     cacggtgccgctgctggtgct 127
               |||||||||||||||||||||
Sbjct: 3582486 cacggtgccgctgctggtgct 3582506
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 260    aggcggtgctgggcgacatcgtcgactgg 288
              |||||| |||||||| |||||||||||||
Sbjct: 304384 aggcggcgctgggcgtcatcgtcgactgg 304356
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>dbj|AB079258.1| Sus scrofa IL-18Ra mRNA for interleukin-18 receptor alpha chain,
            complete cds
          Length = 1620

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 584  gacagagatttctctgctttc 604
            |||||||||||||||||||||
Sbjct: 1514 gacagagatttctctgctttc 1494
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 105     atcacggtgccgctgctggt 124
               ||||||||||||||||||||
Sbjct: 2826482 atcacggtgccgctgctggt 2826501
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>ref|NM_197234.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBb0073N24.18), mRNA
          Length = 414

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 128 ccacggcgccgacgacatgg 147
           ||||||||||||||||||||
Sbjct: 367 ccacggcgccgacgacatgg 348
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>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0062C05 map S21174S, complete sequence
          Length = 178867

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   ccacggcgccgacgacatgg 147
             ||||||||||||||||||||
Sbjct: 33972 ccacggcgccgacgacatgg 33953
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>gb|AE009008.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 34 of
            256 of the complete sequence
          Length = 11218

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 221  acggcctgctgcacgacctc 240
            ||||||||||||||||||||
Sbjct: 7879 acggcctgctgcacgacctc 7860
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>gb|DQ481148.1| Uncultured bacterium clone LT-600_05 membrane bound nitrate
           reductase (narG) gene, partial cds
          Length = 651

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 315 gcgccggccggtccgtggga 334
           ||||||||||||||||||||
Sbjct: 169 gcgccggccggtccgtggga 188
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>ref|XM_802828.1| Trypanosoma cruzi strain CL Brener DNA polymerase kappa
           (Tc00.1047053503755.10) partial mRNA
          Length = 1794

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 72  tgactgcgtacctgcagcagcacc 95
           |||| |||||||||||||||||||
Sbjct: 758 tgacagcgtacctgcagcagcacc 781
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>ref|XM_802830.1| Trypanosoma cruzi strain CL Brener DNA polymerase kappa
           (Tc00.1047053503755.30) partial mRNA
          Length = 1545

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 72  tgactgcgtacctgcagcagcacc 95
           |||| |||||||||||||||||||
Sbjct: 653 tgacagcgtacctgcagcagcacc 676
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>ref|XM_804540.1| Trypanosoma cruzi strain CL Brener DNA polymerase kappa
           (Tc00.1047053510131.50) partial mRNA
          Length = 1815

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 72  tgactgcgtacctgcagcagcacc 95
           |||| |||||||||||||||||||
Sbjct: 779 tgacagcgtacctgcagcagcacc 802
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>ref|XM_804542.1| Trypanosoma cruzi strain CL Brener DNA polymerase kappa
           (Tc00.1047053510131.70) partial mRNA
          Length = 1545

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 72  tgactgcgtacctgcagcagcacc 95
           |||| |||||||||||||||||||
Sbjct: 653 tgacagcgtacctgcagcagcacc 676
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>emb|CR732210.2|CNS0GRX3 Tetraodon nigroviridis full-length cDNA
          Length = 1312

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 122 ggtgctccacggcgccgacg 141
           ||||||||||||||||||||
Sbjct: 468 ggtgctccacggcgccgacg 487
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>emb|CR650047.2|CNS0F0JP Tetraodon nigroviridis full-length cDNA
          Length = 1236

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 122 ggtgctccacggcgccgacg 141
           ||||||||||||||||||||
Sbjct: 571 ggtgctccacggcgccgacg 590
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>emb|CR639895.2|CNS0ESPP Tetraodon nigroviridis full-length cDNA
          Length = 1265

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 122 ggtgctccacggcgccgacg 141
           ||||||||||||||||||||
Sbjct: 434 ggtgctccacggcgccgacg 453
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    cggtgccgctgctggtgctc 128
              ||||||||||||||||||||
Sbjct: 562131 cggtgccgctgctggtgctc 562112
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    aggcggtgctgggcgacatc 279
              ||||||||||||||||||||
Sbjct: 240609 aggcggtgctgggcgacatc 240628
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>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete
             sequence
          Length = 130058

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   ccacggcgccgacgacatgg 147
             ||||||||||||||||||||
Sbjct: 99830 ccacggcgccgacgacatgg 99811
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 120   ctggtgctccacggcgccgacgac 143
             |||||||||||||||| |||||||
Sbjct: 63193 ctggtgctccacggcgacgacgac 63170
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 113     gccgctgctggtgctccacggcgccgacgaca 144
               |||| ||||||||||| |||| ||||||||||
Sbjct: 1442845 gccgttgctggtgctcaacggtgccgacgaca 1442876
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>gb|AE011933.1| Xanthomonas axonopodis pv. citri str. 306,  section 311 of 469 of the
            complete genome
          Length = 11242

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 117  ctgctggtgctccacggcgccgacgaca 144
            |||||||||||| |||| ||||||||||
Sbjct: 2354 ctgctggtgctcaacggtgccgacgaca 2327
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>gb|AE012387.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 295
           of 460 of the complete genome
          Length = 9939

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 113 gccgctgctggtgctccacggcgccgacgaca 144
           |||| ||||||||||| |||||||||| ||||
Sbjct: 363 gccggtgctggtgctcaacggcgccgatgaca 332
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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 221    acggcctgctgcacgacctc 240
              ||||||||||||||||||||
Sbjct: 368438 acggcctgctgcacgacctc 368419
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>gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold
          Length = 470930

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 116    gctgctggtgctccacggcgccga 139
              ||||||| ||||||||||||||||
Sbjct: 299273 gctgctgctgctccacggcgccga 299250



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 116    gctgctggtgctccacggcgccga 139
              ||||||| ||||||||||||||||
Sbjct: 259591 gctgctgctgctccacggcgccga 259568
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 128      ccacggcgccgacgacatgg 147
                ||||||||||||||||||||
Sbjct: 18738552 ccacggcgccgacgacatgg 18738533
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 482     cggcggaggaggctgctgcg 501
               ||||||||||||||||||||
Sbjct: 2633855 cggcggaggaggctgctgcg 2633874
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>dbj|AP005741.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0470H09
          Length = 141257

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 482   cggcggaggaggctgctgcg 501
             ||||||||||||||||||||
Sbjct: 12136 cggcggaggaggctgctgcg 12155
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>gb|AF191325.1|AF191325 Mus musculus SRY-related protein SOX 8 (Sox8) gene, partial cds
          Length = 4519

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 378 cgggagaaacctcccctctccgac 401
           |||||||||| |||||||||||||
Sbjct: 302 cgggagaaacgtcccctctccgac 325
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>dbj|AK060316.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-E04, full
           insert sequence
          Length = 1361

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 482 cggcggaggaggctgctgcg 501
           ||||||||||||||||||||
Sbjct: 233 cggcggaggaggctgctgcg 252
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 113     gccgctgctggtgctccacggcgccgacgaca 144
               |||| ||||||||||| |||| ||||||||||
Sbjct: 1467339 gccgttgctggtgctcaacggtgccgacgaca 1467370
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 128      ccacggcgccgacgacatgg 147
                ||||||||||||||||||||
Sbjct: 18749405 ccacggcgccgacgacatgg 18749386
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 261     ggcggtgctgggcgacatcgtcga 284
               |||||||||| |||||||||||||
Sbjct: 1107031 ggcggtgctgagcgacatcgtcga 1107054
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>gb|AC154418.2| Mus musculus BAC clone RP24-209I7 from chromosome 17, complete sequence
          Length = 195475

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 378    cgggagaaacctcccctctccgac 401
              |||||||||| |||||||||||||
Sbjct: 124312 cgggagaaacgtcccctctccgac 124289


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,810,851
Number of Sequences: 3902068
Number of extensions: 3810851
Number of successful extensions: 77031
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75584
Number of HSP's gapped (non-prelim): 1447
length of query: 607
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 584
effective length of database: 17,143,297,704
effective search space: 10011685859136
effective search space used: 10011685859136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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