>POL_MMTVB (P03365) Pol polyprotein [Contains: Reverse|
           transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
           (RT); Integrase (IN)]
          Length = 899

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -2

Query: 230 NSWPLSAQSIARLKSLPVTGTLLLG-LESSNCPW*KSSNGLRPSFLNK*NSGVQTALKXL 54
           N WPL  + +  L+ L VT  L LG LE SN PW        P F+ K  SG    L+ L
Sbjct: 29  NQWPLKQEKLQALQQL-VTEQLQLGHLEESNSPW------NTPVFVIKKKSGKWRLLQDL 81

Query: 53  GNXLETHH 30
                T H
Sbjct: 82  RAVNATMH 89

>POL_MMTVC (P11283) Pol polyprotein [Contains: Reverse transcriptase (EC|
           2.7.7.49); Endonuclease] (Fragment)
          Length = 114

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -2

Query: 230 NSWPLSAQSIARLKSLPVTGTLLLG-LESSNCPW*KSSNGLRPSFLNK*NSGVQTALKXL 54
           N WPL  + +  L+ L VT  L LG LE SN PW        P F+ K  SG    L+ L
Sbjct: 29  NQWPLKQEKLQALQQL-VTEQLQLGHLEESNSPW------NTPVFVIKKKSGKWRLLQDL 81

Query: 53  GNXLETHH 30
                T H
Sbjct: 82  RAVNATMH 89


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,993,221
Number of Sequences: 219361
Number of extensions: 1675578
Number of successful extensions: 4211
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4211
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)