Clone Information

BLAST Search Result

Clone Name	baalo18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_477314.1\| Oryza sativa (japonica cultivar-group), mRNA	224	3e-55
2	dbj\|AK066852.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	224	3e-55
3	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	109	1e-20
4	dbj\|AP005307.4\| Oryza sativa (japonica cultivar-group) genomic D...	109	1e-20
5	dbj\|AP003756.5\| Oryza sativa (japonica cultivar-group) genomic D...	109	1e-20
6	gb\|AY106725.1\| Zea mays PCO074056 mRNA sequence	78	4e-11
7	emb\|AL596329.5\| Human DNA sequence from clone RP11-179D6 on chro...	44	0.55
8	emb\|AL390023.8\| Human DNA sequence from clone RP5-926E3 on chrom...	44	0.55
9	ref\|NM_101987.2\| Arabidopsis thaliana unknown protein AT1G21350 ...	42	2.2
10	ref\|NM_179363.1\| Arabidopsis thaliana unknown protein AT1G21350 ...	42	2.2
11	ref\|NM_202147.1\| Arabidopsis thaliana unknown protein AT1G21350 ...	42	2.2
12	gb\|AC161215.6\| Mus musculus chromosome 7, clone RP24-185E6, comp...	42	2.2
13	gb\|AC123998.7\| Mus musculus chromosome 5, clone RP24-421H18, com...	42	2.2
14	gb\|BT015113.1\| Arabidopsis thaliana At1g21350 gene, complete cds	42	2.2
15	gb\|AC162897.4\| Mus musculus chromosome 7, clone RP23-371C4, comp...	42	2.2
16	emb\|CR956629.5\| Pig DNA sequence from clone PigE-42A23 on chromo...	42	2.2
17	emb\|AL157360.8\| Human DNA sequence from clone RP11-111C7 on chro...	42	2.2
18	gb\|AC106798.3\| Homo sapiens chromosome 5 clone RP11-434D9, compl...	42	2.2
19	gb\|AC000100.2\| Homo sapiens Chromosome 19 BAC Clone 959a10, comp...	42	2.2
20	gb\|AC073893.4\|AC073893 Homo sapiens BAC clone RP11-978G18 from Y...	42	2.2
21	gb\|AC010682.3\| Homo sapiens BAC clone RP11-251M8 from Y, complet...	42	2.2
22	emb\|BX813605.1\|CNS0AEJ8 Arabidopsis thaliana Full-length cDNA Co...	42	2.2
23	ref\|NG_004755.1\| Homo sapiens chromosome Y palindromes P1, P2, P...	42	2.2
24	gb\|BT002980.1\| Arabidopsis thaliana clone RAFL15-05-P15 (R20443)...	42	2.2
25	gb\|AC005076.2\|AC005076 Homo sapiens BAC clone CTA-227L24 from 7q...	42	2.2
26	emb\|AL935167.8\| Zebrafish DNA sequence from clone CH211-186G6 in...	42	2.2
27	gb\|AE017341.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	40	8.6
28	gb\|AY915216.1\| Schistosoma japonicum SJCHGC03622 protein mRNA, p...	40	8.6
29	ref\|XM_566889.1\| Cryptococcus neoformans var. neoformans JEC21 h...	40	8.6
30	gb\|BT022152.1\| Drosophila melanogaster IP01423 full insert cDNA	40	8.6
31	gb\|AC162919.5\| Mus musculus BAC clone RP23-365O8 from chromosome...	40	8.6
32	gb\|AC140026.11\| Medicago truncatula clone mth2-36j24, complete s...	40	8.6
33	emb\|AL606527.6\| Human DNA sequence from clone RP11-454G24 on chr...	40	8.6
34	emb\|AL391841.17\| Human DNA sequence from clone RP11-123G14 on ch...	40	8.6
35	emb\|AL389915.19\| Human DNA sequence from clone RP11-438P9 on chr...	40	8.6
36	emb\|AL390732.10\| Human DNA sequence from clone RP11-439N12 on ch...	40	8.6
37	emb\|AL356100.8\| Human DNA sequence from clone RP11-359H22 on chr...	40	8.6
38	emb\|AL031122.3\|HS503N11 Human DNA sequence from clone RP3-503N11...	40	8.6
39	gb\|AC092053.3\| Homo sapiens chromosome 3 clone RP11-331G2, compl...	40	8.6
40	gb\|AF461416.1\| Drosophila melanogaster gcm-motif transcription f...	40	8.6
41	gb\|AC162391.9\| Mus musculus 6 BAC RP23-126H2 (Roswell Park Cance...	40	8.6
42	gb\|AC103559.2\| Homo sapiens chromosome 3 clone RP11-286L5, compl...	40	8.6
43	gb\|AC104850.2\| Homo sapiens chromosome 3 clone RP11-241K18, comp...	40	8.6
44	ref\|NM_205947.1\| Drosophila melanogaster gcm2 CG3858-RB, transcr...	40	8.6
45	gb\|AC093431.2\| Homo sapiens chromosome 1 clone RP11-574N2, compl...	40	8.6
46	gb\|AC114288.2\| Homo sapiens chromosome 5 clone CTD-2373J16, comp...	40	8.6
47	ref\|NM_135458.3\| Drosophila melanogaster gcm2 CG3858-RA, transcr...	40	8.6
48	gb\|AC008948.8\| Homo sapiens chromosome 5 clone CTD-2333K2, compl...	40	8.6
49	gb\|AF184664.1\|AF184664 Drosophila melanogaster Glide2 mRNA, comp...	40	8.6
50	gb\|AC154357.2\| Mus musculus BAC clone RP23-192E11 from chromosom...	40	8.6
51	gb\|AC007464.4\| Homo sapiens BAC clone RP11-542B5 from 2, complet...	40	8.6
52	gb\|AC092632.2\| Homo sapiens BAC clone RP11-337B18 from 2, comple...	40	8.6
53	dbj\|AB063285.1\| Homo sapiens HLCS gene for holocarboxylase synth...	40	8.6
54	emb\|AJ001863.1\|HS001863 Homo Sapiens mRNA partial cDNA sequence ...	40	8.6
55	gb\|AC007257.9\|AC007257 Drosophila melanogaster, chromosome 2L, r...	40	8.6
56	gb\|AE003625.3\| Drosophila melanogaster chromosome 2L, section 34...	40	8.6
57	dbj\|AP001727.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	8.6
58	gb\|AC106797.2\| Homo sapiens chromosome 5 clone RP11-433I2, compl...	40	8.6
59	gb\|AC161256.3\| Mus musculus BAC clone RP24-70H20 from chromosome...	40	8.6
60	emb\|AL772258.9\| Mouse DNA sequence from clone RP23-337P24 on chr...	40	8.6
61	emb\|AL807238.5\| Mouse DNA sequence from clone RP23-476F6 on chro...	40	8.6
62	emb\|AL928658.6\| Mouse DNA sequence from clone RP23-238A18 on chr...	40	8.6
63	dbj\|AB056467.1\| Drosophila melanogaster gcm2 mRNA for transcript...	40	8.6
64	dbj\|AP000698.1\| Homo sapiens genomic DNA, chromosome 21q22.2, co...	40	8.6

>ref|XM_477314.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1250

 Score =  224 bits (113), Expect = 3e-55
 Identities = 237/276 (85%), Gaps = 2/276 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgtttaaatacccttttccttatttgtatgatgagtctcaagnaagttgccaaggnat 60
           ||||| ||||||| |||| || ||| | |||||||||||||||| ||||||| || |  |
Sbjct: 528 attgtataaatactctttcccgtatctatatgatgagtctcaag-aagttgctaaagc-t 585

                                                                       
Query: 61  tttagagcagtctgcacaccagagttttacttgttcaaaaaagatgggcgaaggccattt 120
           ||| |||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 586 tttcgagccgtctgcacgccagagttttacttgttcaaaaaggatggacgaaggccattt 645

                                                                       
Query: 121 gaacttttttaccacgggcagtttgatgattcaagaccgagtaacaatgtgccagttaca 180
           || ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||| 
Sbjct: 646 gagcttttctaccatgggcagtttgacgattcaagaccgagtaacaacgtgccagttacc 705

                                                                       
Query: 181 ggaagagatttaagccgcgcaatcgactgtgcacttagtggccaagaattgccgttcgac 240
           ||||| |||||||| || || || || |||||||||||||| |||||  | || || |  
Sbjct: 706 ggaagggatttaagtcgtgcgattgattgtgcacttagtggacaagagctaccttttgtg 765

                                               
Query: 241 caaaaaccaagtgtcgggtgcagcatcaagtggcac 276
           | |||||| |||||||||||||||||||| ||||||
Sbjct: 766 ccaaaacccagtgtcgggtgcagcatcaaatggcac 801

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>dbj|AK066852.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013077B21, full
           insert sequence
          Length = 1250

 Score =  224 bits (113), Expect = 3e-55
 Identities = 237/276 (85%), Gaps = 2/276 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgtttaaatacccttttccttatttgtatgatgagtctcaagnaagttgccaaggnat 60
           ||||| ||||||| |||| || ||| | |||||||||||||||| ||||||| || |  |
Sbjct: 528 attgtataaatactctttcccgtatctatatgatgagtctcaag-aagttgctaaagc-t 585

                                                                       
Query: 61  tttagagcagtctgcacaccagagttttacttgttcaaaaaagatgggcgaaggccattt 120
           ||| |||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 586 tttcgagccgtctgcacgccagagttttacttgttcaaaaaggatggacgaaggccattt 645

                                                                       
Query: 121 gaacttttttaccacgggcagtttgatgattcaagaccgagtaacaatgtgccagttaca 180
           || ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||| 
Sbjct: 646 gagcttttctaccatgggcagtttgacgattcaagaccgagtaacaacgtgccagttacc 705

                                                                       
Query: 181 ggaagagatttaagccgcgcaatcgactgtgcacttagtggccaagaattgccgttcgac 240
           ||||| |||||||| || || || || |||||||||||||| |||||  | || || |  
Sbjct: 706 ggaagggatttaagtcgtgcgattgattgtgcacttagtggacaagagctaccttttgtg 765

                                               
Query: 241 caaaaaccaagtgtcgggtgcagcatcaagtggcac 276
           | |||||| |||||||||||||||||||| ||||||
Sbjct: 766 ccaaaacccagtgtcgggtgcagcatcaaatggcac 801

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  109 bits (55), Expect = 1e-20
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                           
Query: 103     gatgggcgaaggccatttgaacttttttaccacgggcagtttgatgattcaagaccgagt 162
               ||||| |||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||
Sbjct: 9134259 gatggacgaaggccatttgagcttttctaccatgggcagtttgacgattcaagaccgagt 9134318

                                      
Query: 163     aacaatgtgccagttacaggaag 185
               ||||| ||||||||||| |||||
Sbjct: 9134319 aacaacgtgccagttaccggaag 9134341



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                         
Query: 60      ttttagagcagtctgcacaccagagttttacttgttcaaaaa 101
               |||| |||| |||||||| |||||||||||||||||||||||
Sbjct: 9133601 ttttcgagccgtctgcacgccagagttttacttgttcaaaaa 9133642



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 250     agtgtcgggtgcagcatcaagtggcac 276
               |||||||||||||||||||| ||||||
Sbjct: 9134574 agtgtcgggtgcagcatcaaatggcac 9134600

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>dbj|AP005307.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0046D03
          Length = 150554

 Score =  109 bits (55), Expect = 1e-20
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                         
Query: 103   gatgggcgaaggccatttgaacttttttaccacgggcagtttgatgattcaagaccgagt 162
             ||||| |||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||
Sbjct: 17132 gatggacgaaggccatttgagcttttctaccatgggcagtttgacgattcaagaccgagt 17191

                                    
Query: 163   aacaatgtgccagttacaggaag 185
             ||||| ||||||||||| |||||
Sbjct: 17192 aacaacgtgccagttaccggaag 17214



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                       
Query: 60    ttttagagcagtctgcacaccagagttttacttgttcaaaaa 101
             |||| |||| |||||||| |||||||||||||||||||||||
Sbjct: 16474 ttttcgagccgtctgcacgccagagttttacttgttcaaaaa 16515



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 250   agtgtcgggtgcagcatcaagtggcac 276
             |||||||||||||||||||| ||||||
Sbjct: 17447 agtgtcgggtgcagcatcaaatggcac 17473

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>dbj|AP003756.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1370_E02
          Length = 128326

 Score =  109 bits (55), Expect = 1e-20
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                          
Query: 103    gatgggcgaaggccatttgaacttttttaccacgggcagtttgatgattcaagaccgagt 162
              ||||| |||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||
Sbjct: 124666 gatggacgaaggccatttgagcttttctaccatgggcagtttgacgattcaagaccgagt 124725

                                     
Query: 163    aacaatgtgccagttacaggaag 185
              ||||| ||||||||||| |||||
Sbjct: 124726 aacaacgtgccagttaccggaag 124748



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                        
Query: 60     ttttagagcagtctgcacaccagagttttacttgttcaaaaa 101
              |||| |||| |||||||| |||||||||||||||||||||||
Sbjct: 124008 ttttcgagccgtctgcacgccagagttttacttgttcaaaaa 124049



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 250    agtgtcgggtgcagcatcaagtggcac 276
              |||||||||||||||||||| ||||||
Sbjct: 124981 agtgtcgggtgcagcatcaaatggcac 125007

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>gb|AY106725.1| Zea mays PCO074056 mRNA sequence
          Length = 547

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 96/114 (84%), Gaps = 1/114 (0%)
 Strand = Plus / Plus

                                                                       
Query: 60  ttttagagcagtctgcacaccagagttttacttgttcaaaaaagatgggcgaaggccatt 119
           |||| |||| |||||||| |||||||| |||||||||||||| ||||| || | ||   |
Sbjct: 22  ttttggagcggtctgcacgccagagttctacttgttcaaaaaggatggccgga-gcttnt 80

                                                                 
Query: 120 tgaacttttttaccacgggcagtttgatgattcaagaccgagtaacaatgtgcc 173
           ||||||||| ||||| || ||||| ||||| |||||||| |||||||| |||||
Sbjct: 81  tgaacttttctaccatggacagttcgatgactcaagacccagtaacaacgtgcc 134



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 74/86 (86%)
 Strand = Plus / Plus

                                                                       
Query: 191 taagccgcgcaatcgactgtgcacttagtggccaagaattgccgttcgaccaaaaaccaa 250
           |||||||||| || |||||||| || |||||||||||| |||| || |  ||||| ||||
Sbjct: 153 taagccgcgcgattgactgtgcgctcagtggccaagaactgccctttgtgcaaaagccaa 212

                                     
Query: 251 gtgtcgggtgcagcatcaagtggcac 276
           ||||||| ||||||||||| ||||||
Sbjct: 213 gtgtcggctgcagcatcaaatggcac 238

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>emb|AL596329.5| Human DNA sequence from clone RP11-179D6 on chromosome 13, complete
             sequence
          Length = 85563

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 565   tgctgtaataaacatacacatg 586
             ||||||||||||||||||||||
Sbjct: 33595 tgctgtaataaacatacacatg 33616

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>emb|AL390023.8| Human DNA sequence from clone RP5-926E3 on chromosome 1p32.3-34.1
             Contains part of the gene for a novel protein and a
             pseudogene similar to part of ribosomal protein S11
             (RPS11), complete sequence
          Length = 131237

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 565   tgctgtaataaacatacacatg 586
             ||||||||||||||||||||||
Sbjct: 27674 tgctgtaataaacatacacatg 27695

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>ref|NM_101987.2| Arabidopsis thaliana unknown protein AT1G21350 transcript variant
           AT1G21350.1 mRNA, complete cds
          Length = 1097

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 8   aaatacccttttccttatttgtatgatgagtctcaag 44
           |||||||| |||||||| || ||||||||||| ||||
Sbjct: 592 aaatacccatttccttacttatatgatgagtcacaag 628

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>ref|NM_179363.1| Arabidopsis thaliana unknown protein AT1G21350 transcript variant
           AT1G21350.2 mRNA, complete cds
          Length = 1102

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 8   aaatacccttttccttatttgtatgatgagtctcaag 44
           |||||||| |||||||| || ||||||||||| ||||
Sbjct: 592 aaatacccatttccttacttatatgatgagtcacaag 628

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>ref|NM_202147.1| Arabidopsis thaliana unknown protein AT1G21350 transcript variant
           AT1G21350.3 mRNA, complete cds
          Length = 1005

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 8   aaatacccttttccttatttgtatgatgagtctcaag 44
           |||||||| |||||||| || ||||||||||| ||||
Sbjct: 496 aaatacccatttccttacttatatgatgagtcacaag 532

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>gb|AC161215.6| Mus musculus chromosome 7, clone RP24-185E6, complete sequence
          Length = 165330

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 168   tgtgccagttacaggaagaga 188
             |||||||||||||||||||||
Sbjct: 86440 tgtgccagttacaggaagaga 86460

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>gb|AC123998.7| Mus musculus chromosome 5, clone RP24-421H18, complete sequence
          Length = 151344

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 309    gatgattttgtttttctctct 329
              |||||||||||||||||||||
Sbjct: 122484 gatgattttgtttttctctct 122464

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>gb|BT015113.1| Arabidopsis thaliana At1g21350 gene, complete cds
          Length = 456

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 8   aaatacccttttccttatttgtatgatgagtctcaag 44
           |||||||| |||||||| || ||||||||||| ||||
Sbjct: 172 aaatacccatttccttacttatatgatgagtcacaag 208

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>gb|AC162897.4| Mus musculus chromosome 7, clone RP23-371C4, complete sequence
          Length = 187677

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 168    tgtgccagttacaggaagaga 188
              |||||||||||||||||||||
Sbjct: 127219 tgtgccagttacaggaagaga 127239

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>emb|CR956629.5| Pig DNA sequence from clone PigE-42A23 on chromosome 7, complete
             sequence
          Length = 156529

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 303   caagcagatgattttgttttt 323
             |||||||||||||||||||||
Sbjct: 60764 caagcagatgattttgttttt 60784

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>emb|AL157360.8| Human DNA sequence from clone RP11-111C7 on chromosome 13, complete
              sequence
          Length = 148861

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 565    tgctgtaataaacatacacat 585
              |||||||||||||||||||||
Sbjct: 112312 tgctgtaataaacatacacat 112332

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>gb|AC106798.3| Homo sapiens chromosome 5 clone RP11-434D9, complete sequence
          Length = 172966

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 566   gctgtaataaacatacacatg 586
             |||||||||||||||||||||
Sbjct: 87029 gctgtaataaacatacacatg 87049

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>gb|AC000100.2| Homo sapiens Chromosome 19 BAC Clone 959a10, complete sequence
          Length = 101912

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 565   tgctgtaataaacatacacat 585
             |||||||||||||||||||||
Sbjct: 79213 tgctgtaataaacatacacat 79193

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>gb|AC073893.4|AC073893 Homo sapiens BAC clone RP11-978G18 from Y, complete sequence
          Length = 64450

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 565   tgctgtaataaacatacacat 585
             |||||||||||||||||||||
Sbjct: 16286 tgctgtaataaacatacacat 16266

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>gb|AC010682.3| Homo sapiens BAC clone RP11-251M8 from Y, complete sequence
          Length = 145383

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 565   tgctgtaataaacatacacat 585
             |||||||||||||||||||||
Sbjct: 87097 tgctgtaataaacatacacat 87117

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>emb|BX813605.1|CNS0AEJ8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB27ZE08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 898

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 8   aaatacccttttccttatttgtatgatgagtctcaag 44
           |||||||| |||||||| || ||||||||||| ||||
Sbjct: 389 aaatacccatttccttacttatatgatgagtcacaag 425

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>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 565     tgctgtaataaacatacacat 585
               |||||||||||||||||||||
Sbjct: 3923894 tgctgtaataaacatacacat 3923914



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 565     tgctgtaataaacatacacat 585
               |||||||||||||||||||||
Sbjct: 2124449 tgctgtaataaacatacacat 2124429

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>gb|BT002980.1| Arabidopsis thaliana clone RAFL15-05-P15 (R20443) unknown protein
           (At1g21350) mRNA, complete cds
          Length = 1115

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 8   aaatacccttttccttatttgtatgatgagtctcaag 44
           |||||||| |||||||| || ||||||||||| ||||
Sbjct: 593 aaatacccatttccttacttatatgatgagtcacaag 629

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>gb|AC005076.2|AC005076 Homo sapiens BAC clone CTA-227L24 from 7q21.1-q21.2, complete sequence
          Length = 158146

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 566    gctgtaataaacatacacatg 586
              |||||||||||||||||||||
Sbjct: 150798 gctgtaataaacatacacatg 150778

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>emb|AL935167.8| Zebrafish DNA sequence from clone CH211-186G6 in linkage group 16,
              complete sequence
          Length = 137333

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 307    cagatgattttgtttttctct 327
              |||||||||||||||||||||
Sbjct: 109568 cagatgattttgtttttctct 109548

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>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete
               sequence
          Length = 2300533

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 296     ttgaggacaagcagatgatt 315
               ||||||||||||||||||||
Sbjct: 1517133 ttgaggacaagcagatgatt 1517114

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>gb|AY915216.1| Schistosoma japonicum SJCHGC03622 protein mRNA, partial cds
          Length = 665

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 467 gttggacattgttttgttgt 486
           ||||||||||||||||||||
Sbjct: 117 gttggacattgttttgttgt 136

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>ref|XM_566889.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNA05670) partial mRNA
          Length = 4182

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 296  ttgaggacaagcagatgatt 315
            ||||||||||||||||||||
Sbjct: 1575 ttgaggacaagcagatgatt 1556

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>gb|BT022152.1| Drosophila melanogaster IP01423 full insert cDNA
          Length = 2257

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  cacttagtggccaagaattg 231
            ||||||||||||||||||||
Sbjct: 1219 cacttagtggccaagaattg 1200

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>gb|AC162919.5| Mus musculus BAC clone RP23-365O8 from chromosome 6, complete sequence
          Length = 193362

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 202   atcgactgtgcacttagtggccaa 225
             |||| |||||||||||||||||||
Sbjct: 13040 atcgtctgtgcacttagtggccaa 13063

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>gb|AC140026.11| Medicago truncatula clone mth2-36j24, complete sequence
          Length = 162172

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   attttgtttttctctctcga 332
             ||||||||||||||||||||
Sbjct: 91607 attttgtttttctctctcga 91588

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>emb|AL606527.6| Human DNA sequence from clone RP11-454G24 on chromosome 1 Contains a
              alcohol dehydrogenase 5 (class III) chi polypeptide (ADH5)
              pseudogene, complete sequence
          Length = 179964

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 565    tgctgtaataaacatacacatgga 588
              ||||||||| ||||||||||||||
Sbjct: 123659 tgctgtaatgaacatacacatgga 123636

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>emb|AL391841.17| Human DNA sequence from clone RP11-123G14 on chromosome 13 Contains
             part of a novel gene (FLJ22153) and a CpG island, complete
             sequence
          Length = 99441

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 523   cccaaattctacccgtagct 542
             ||||||||||||||||||||
Sbjct: 87367 cccaaattctacccgtagct 87386

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>emb|AL389915.19| Human DNA sequence from clone RP11-438P9 on chromosome 9 Contains a
            ribosomal protein S16 (RPS16) pseudogene, a
            peptidylprolyl isomerase A (cyclophilin A) (PPIA)
            pseudogene and a CpG island, complete sequence
          Length = 199601

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 563  actgctgtaataaacatacacatg 586
            ||||||| ||||||||||||||||
Sbjct: 3982 actgctgcaataaacatacacatg 4005

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>emb|AL390732.10| Human DNA sequence from clone RP11-439N12 on chromosome 9 Contains a
              novel gene similar to mouse 9130404H11Rik protein, the CER1
              gene for cerberus 1 homolog, cysteine knot superfamily
              (Xenopus laevis) and the 3' end of a novel gene (FLJ25416),
              complete sequence
          Length = 143246

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 563    actgctgtaataaacataca 582
              ||||||||||||||||||||
Sbjct: 112032 actgctgtaataaacataca 112013

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>emb|AL356100.8| Human DNA sequence from clone RP11-359H22 on chromosome 10 Contains part
              of a novel gene (KIAA0534), complete sequence
          Length = 190361

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 563    actgctgtaataaacatacacatg 586
              |||||||| |||||||||||||||
Sbjct: 133076 actgctgtgataaacatacacatg 133099

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>emb|AL031122.3|HS503N11 Human DNA sequence from clone RP3-503N11 on chromosome 6p24.1-24.3,
             complete sequence
          Length = 94749

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     attgtttaaatacccttttc 20
             ||||||||||||||||||||
Sbjct: 40986 attgtttaaatacccttttc 41005

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>gb|AC092053.3| Homo sapiens chromosome 3 clone RP11-331G2, complete sequence
          Length = 176593

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 563   actgctgtaataaacataca 582
             ||||||||||||||||||||
Sbjct: 71707 actgctgtaataaacataca 71726

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>gb|AF461416.1| Drosophila melanogaster gcm-motif transcription factor (gcm2) mRNA,
            complete cds
          Length = 2964

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  cacttagtggccaagaattg 231
            ||||||||||||||||||||
Sbjct: 1919 cacttagtggccaagaattg 1900

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>gb|AC162391.9| Mus musculus 6 BAC RP23-126H2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 209173

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 202   atcgactgtgcacttagtggccaa 225
             |||| |||||||||||||||||||
Sbjct: 48352 atcgtctgtgcacttagtggccaa 48329

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>gb|AC103559.2| Homo sapiens chromosome 3 clone RP11-286L5, complete sequence
          Length = 184133

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 270    gtggcacaagtgaagagttt 289
              ||||||||||||||||||||
Sbjct: 174519 gtggcacaagtgaagagttt 174538

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>gb|AC104850.2| Homo sapiens chromosome 3 clone RP11-241K18, complete sequence
          Length = 173580

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 563  actgctgtaataaacataca 582
            ||||||||||||||||||||
Sbjct: 8652 actgctgtaataaacataca 8633

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>ref|NM_205947.1| Drosophila melanogaster gcm2 CG3858-RB, transcript variant B (gcm2),
            mRNA
          Length = 2924

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  cacttagtggccaagaattg 231
            ||||||||||||||||||||
Sbjct: 1898 cacttagtggccaagaattg 1879

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>gb|AC093431.2| Homo sapiens chromosome 1 clone RP11-574N2, complete sequence
          Length = 164454

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 565   tgctgtaataaacatacacatgga 588
             ||||||||| ||||||||||||||
Sbjct: 56286 tgctgtaatgaacatacacatgga 56309

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>gb|AC114288.2| Homo sapiens chromosome 5 clone CTD-2373J16, complete sequence
          Length = 84270

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 565   tgctgtaataaacatacaca 584
             ||||||||||||||||||||
Sbjct: 27441 tgctgtaataaacatacaca 27422

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>ref|NM_135458.3| Drosophila melanogaster gcm2 CG3858-RA, transcript variant A (gcm2),
            mRNA
          Length = 2415

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  cacttagtggccaagaattg 231
            ||||||||||||||||||||
Sbjct: 1389 cacttagtggccaagaattg 1370

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>gb|AC008948.8| Homo sapiens chromosome 5 clone CTD-2333K2, complete sequence
          Length = 176656

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 563   actgctgtaataaacatacacatg 586
             ||||||| ||||||||||||||||
Sbjct: 29767 actgctgcaataaacatacacatg 29744

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>gb|AF184664.1|AF184664 Drosophila melanogaster Glide2 mRNA, complete cds
          Length = 2332

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  cacttagtggccaagaattg 231
            ||||||||||||||||||||
Sbjct: 1330 cacttagtggccaagaattg 1311

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>gb|AC154357.2| Mus musculus BAC clone RP23-192E11 from chromosome 9, complete sequence
          Length = 195151

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 15    cttttccttatttgtatgatgagt 38
             |||||| |||||||||||||||||
Sbjct: 36480 cttttctttatttgtatgatgagt 36503

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>gb|AC007464.4| Homo sapiens BAC clone RP11-542B5 from 2, complete sequence
          Length = 186187

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     attgtttaaatacccttttc 20
             ||||||||||||||||||||
Sbjct: 88632 attgtttaaatacccttttc 88651

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>gb|AC092632.2| Homo sapiens BAC clone RP11-337B18 from 2, complete sequence
          Length = 199385

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 565    tgctgtaataaacatacaca 584
              ||||||||||||||||||||
Sbjct: 190348 tgctgtaataaacatacaca 190367

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>dbj|AB063285.1| Homo sapiens HLCS gene for holocarboxylase synthetase, complete cds
          Length = 250000

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 349    gaggaggcggcacctatatt 368
              ||||||||||||||||||||
Sbjct: 207546 gaggaggcggcacctatatt 207527

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>emb|AJ001863.1|HS001863 Homo Sapiens mRNA partial cDNA sequence from cDNA selection,
           DCR1-8.0
          Length = 1488

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 349 gaggaggcggcacctatatt 368
           ||||||||||||||||||||
Sbjct: 368 gaggaggcggcacctatatt 349

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>gb|AC007257.9|AC007257 Drosophila melanogaster, chromosome 2L, region 30B-, BAC clone
             BACR24A22, complete sequence
          Length = 183007

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   cacttagtggccaagaattg 231
             ||||||||||||||||||||
Sbjct: 92433 cacttagtggccaagaattg 92452

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>gb|AE003625.3| Drosophila melanogaster chromosome 2L, section 34 of 83 of the complete
              sequence
          Length = 271507

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 212    cacttagtggccaagaattg 231
              ||||||||||||||||||||
Sbjct: 174272 cacttagtggccaagaattg 174253

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>dbj|AP001727.1| Homo sapiens genomic DNA, chromosome 21q, section 71/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 349  gaggaggcggcacctatatt 368
            ||||||||||||||||||||
Sbjct: 6366 gaggaggcggcacctatatt 6385

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>gb|AC106797.2| Homo sapiens chromosome 5 clone RP11-433I2, complete sequence
          Length = 169265

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 565  tgctgtaataaacatacaca 584
            ||||||||||||||||||||
Sbjct: 3683 tgctgtaataaacatacaca 3664

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>gb|AC161256.3| Mus musculus BAC clone RP24-70H20 from chromosome 9, complete sequence
          Length = 190832

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 467   gttggacattgttttgttgtgtat 490
             ||||||||| ||||||||||||||
Sbjct: 40666 gttggacatagttttgttgtgtat 40643

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>emb|AL772258.9| Mouse DNA sequence from clone RP23-337P24 on chromosome 2, complete
              sequence
          Length = 200480

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 489    attactgacaaagtagcagt 508
              ||||||||||||||||||||
Sbjct: 118023 attactgacaaagtagcagt 118004

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>emb|AL807238.5| Mouse DNA sequence from clone RP23-476F6 on chromosome 4, complete
            sequence
          Length = 169745

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 214  cttagtggccaagaattgcc 233
            ||||||||||||||||||||
Sbjct: 5308 cttagtggccaagaattgcc 5327

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>emb|AL928658.6| Mouse DNA sequence from clone RP23-238A18 on chromosome 2, complete
              sequence
          Length = 220679

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 574    aaacatacacatggaaatag 593
              ||||||||||||||||||||
Sbjct: 186099 aaacatacacatggaaatag 186118

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>dbj|AB056467.1| Drosophila melanogaster gcm2 mRNA for transcription factor glial
            cells missing 2, complete cds
          Length = 2411

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  cacttagtggccaagaattg 231
            ||||||||||||||||||||
Sbjct: 1389 cacttagtggccaagaattg 1370

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>dbj|AP000698.1| Homo sapiens genomic DNA, chromosome 21q22.2, cosmid clone:D8F6,
             CBR1-HLCS region
          Length = 39159

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 349   gaggaggcggcacctatatt 368
             ||||||||||||||||||||
Sbjct: 31030 gaggaggcggcacctatatt 31049


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,031,877
Number of Sequences: 3902068
Number of extensions: 6031877
Number of successful extensions: 118078
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117862
Number of HSP's gapped (non-prelim): 214
length of query: 630
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 607
effective length of database: 17,143,297,704
effective search space: 10405981706328
effective search space used: 10405981706328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result