ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baalo17 |
|---|---|
| Clone Library Name | barley_pub |
>YMF0_YEAST (Q04689) Hypothetical 36.0 kDa protein in GAL80-PRP39 intergenic| region Length = 311 Score = 60.5 bits (145), Expect = 3e-09 Identities = 33/105 (31%), Positives = 59/105 (56%), Gaps = 4/105 (3%) Frame = +2 Query: 26 VCCHGSRDKRCGVCGPALITRFKEEIEGQGLDGQVAVSACSHVGGHKYAGNVIIFS---- 193 VC H RD +CG GP +I F++E L + ++ SH+GGH +AGNVI + Sbjct: 212 VCGHYKRDAKCGEMGPDIIAAFQDE----KLFPENNLALISHIGGHIFAGNVIFYKLFGR 267 Query: 194 PDAKGEVTGHWYGYVAPDDVPVLLRQHIGQGEIVGHLWRGQLGLS 328 + ++ W+G V P ++ LL +++ G+I+ ++RG + ++ Sbjct: 268 EKMQNKLDSLWFGKVYPHNLK-LLCENLENGKIIDEMYRGGISMN 311
>YB01_YEAST (P38281) Protein YBR151W| Length = 316 Score = 60.1 bits (144), Expect = 4e-09 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 9/97 (9%) Frame = +2 Query: 14 SYVFVCCHGSRDKRCGVCGPALITRFKEEIEGQGL---------DGQVAVSACSHVGGHK 166 ++VF+C H +RDKRCG+ P L F +++ GL +G V ++ +HVGGHK Sbjct: 202 AFVFICSHTTRDKRCGITAPYLKKVFDSKLQEHGLYRDNSDYRAEG-VKIAFVNHVGGHK 260 Query: 167 YAGNVIIFSPDAKGEVTGHWYGYVAPDDVPVLLRQHI 277 +A NV I+ + T W G V P VP ++ I Sbjct: 261 FAANVQIY---LRNPNTLIWLGRVTPTIVPSIVEHLI 294
>FER2_CLOPA (P07324) Ferredoxin, 2Fe-2S (2FeCpFd)| Length = 102 Score = 41.2 bits (95), Expect = 0.002 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Frame = +2 Query: 17 YVFVCCHGSRD-KRCGVC----GPALITRFKEEIEGQGLDGQVAVSACSHVGGHKYAGNV 181 ++FVC + K+ G C ++ F EE++ + L +V V+ G G + Sbjct: 7 HIFVCTSCRLNGKQQGFCYSKNSVEIVETFMEELDSRDLSSEVMVNNTGCFGICSQ-GPI 65 Query: 182 IIFSPDAKGEVTGHWYGYVAPDDVPVLLRQHIGQGEIVGHL 304 ++ P+ G WYG V DDV ++ HI GE+V L Sbjct: 66 VVVYPE------GVWYGNVTADDVEEIVESHIENGEVVKRL 100
>FER2_AQUAE (O66511) Ferredoxin, 2Fe-2S (AaFd4)| Length = 110 Score = 33.9 bits (76), Expect = 0.28 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = +2 Query: 173 GNVIIFSPDAKGEVTGHWYGYVAPDDVPVLLRQHIGQGEIVGHL 304 G V++ PD G WYG V P+DV ++ +H+ GE V L Sbjct: 62 GPVVVVYPD------GVWYGQVKPEDVDEIVEKHLKGGEPVERL 99
>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) (Homologous to ALR protein) Length = 4911 Score = 33.1 bits (74), Expect = 0.47 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Frame = -2 Query: 392 ILPQLRHSSHA*APELFSAALQTNPTG-PSTDGPQSLLVQYVDAVTQAHHQEQHNHTNDQ 216 + PQLR S P + + NP G P PQSL VQ + + QA+ + +H + + Sbjct: 2510 VSPQLRRSVSVDMPRPLNNSQMNNPVGLPQHFSPQSLPVQQHNILGQAYIELRHRAPDGR 2569 Query: 215 SLLPW 201 LP+ Sbjct: 2570 QRLPF 2574
>CTPI_MYCTU (Q10900) Probable cation-transporting ATPase I (EC 3.6.3.-)| Length = 1625 Score = 30.4 bits (67), Expect = 3.0 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = -2 Query: 341 SAALQTNPTGPSTDGPQS-LLVQYVDAVTQAHHQEQHNHTNDQSLL 207 S A + +P +TD P + +L A TQ H+ E H H D+++L Sbjct: 1072 STAAERDPLPQTTDAPSAEVLRAAARASTQPHNGEGHAHATDEAIL 1117
>QUEF_PASMU (Q9CNF6) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)| Length = 279 Score = 29.6 bits (65), Expect = 5.2 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 9/73 (12%) Frame = -3 Query: 256 RHIIRSNITIPMTS--HFSLGIWTEYDDISCI-------LVTSNV*ACTNSHLTIKTLSF 104 RH+ R + I T HF IWT Y +IS + + ++V S I++ SF Sbjct: 33 RHLNRDTLGITHTQPFHFGADIWTAY-EISWLNLNGLPQVAIADVAIDFQSENLIESKSF 91 Query: 103 NLFLEPCNQSRTA 65 L+L NQS+ A Sbjct: 92 KLYLNSFNQSKFA 104
>TRAM_AGRTU (Q57471) Transcriptional repressor traM| Length = 102 Score = 29.3 bits (64), Expect = 6.8 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -2 Query: 356 APELFSAALQTNPTGPSTDGPQSLLVQYVDAVTQAHHQ 243 A ELF A +T TG + GPQ ++Y++A + H Q Sbjct: 47 ADELFQALPETYKTGQACGGPQH--IRYIEASIEMHAQ 82
>STAT1_CAEBR (Q61AP6) Signal transducer and activator of transcription 1| Length = 713 Score = 29.3 bits (64), Expect = 6.8 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Frame = -2 Query: 371 SSHA*APELFSAALQTNPTGPSTDGPQSLLVQYVDA-----VTQAHHQEQHNHTNDQ 216 S H A L A + NPT D Q L Q+VD + Q HH HNHT++Q Sbjct: 656 SMHPDANTLLGPAFK-NPTFHPHDQQQHL--QFVDMSHPQMMQQQHHGHNHNHTHNQ 709
>POL_BLVJ (P03361) Pol polyprotein [Contains: Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 852 Score = 29.3 bits (64), Expect = 6.8 Identities = 29/80 (36%), Positives = 35/80 (43%) Frame = -2 Query: 449 GCKQQHRWFHLLQGILWRLILPQLRHSSHA*APELFSAALQTNPTGPSTDGPQSLLVQYV 270 G Q HR F WR +LPQ +S P LF ALQ S QSLLV Y+ Sbjct: 114 GGLQPHRRF------AWR-VLPQGFINS----PALFERALQEPLRQVSAAFSQSLLVSYM 162 Query: 269 DAVTQAHHQEQHNHTNDQSL 210 D + A E+ Q+L Sbjct: 163 DDILYASPTEEQRSQCYQAL 182
>DDX54_MOUSE (Q8K4L0) ATP-dependent RNA helicase DDX54 (EC 3.6.1.-) (DEAD box| protein 54) Length = 874 Score = 29.3 bits (64), Expect = 6.8 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 13/53 (24%) Frame = +2 Query: 176 NVIIFSPDAKGEV-------------TGHWYGYVAPDDVPVLLRQHIGQGEIV 295 NVI +S AKG++ +G Y VAPD+VP LL H+ G V Sbjct: 408 NVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLGRSV 460
>TKT_STAAW (P66963) Transketolase (EC 2.2.1.1) (TK)| Length = 662 Score = 28.9 bits (63), Expect = 8.9 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%) Frame = +2 Query: 89 FKEEIEGQGLDGQVAVSACSHVGGHKY---AGNVII---FSPDAKGEVTGHWYGY 235 +KE + + +VA+ S +G HKY AG VI F A G++ YG+ Sbjct: 596 YKESVIPSSVTKRVAIEMASPLGWHKYVGTAGKVIAIDGFGASAPGDLVVEKYGF 650
>TKT_STAAS (Q6G9L6) Transketolase (EC 2.2.1.1) (TK)| Length = 662 Score = 28.9 bits (63), Expect = 8.9 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%) Frame = +2 Query: 89 FKEEIEGQGLDGQVAVSACSHVGGHKY---AGNVII---FSPDAKGEVTGHWYGY 235 +KE + + +VA+ S +G HKY AG VI F A G++ YG+ Sbjct: 596 YKESVIPSSVTKRVAIEMASPLGWHKYVGTAGKVIAIDGFGASAPGDLVVEKYGF 650
>TKT_STAAR (Q6GH64) Transketolase (EC 2.2.1.1) (TK)| Length = 662 Score = 28.9 bits (63), Expect = 8.9 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%) Frame = +2 Query: 89 FKEEIEGQGLDGQVAVSACSHVGGHKY---AGNVII---FSPDAKGEVTGHWYGY 235 +KE + + +VA+ S +G HKY AG VI F A G++ YG+ Sbjct: 596 YKESVIPSSVTKRVAIEMASPLGWHKYVGTAGKVIAIDGFGASAPGDLVVEKYGF 650
>TKT_STAAN (P99161) Transketolase (EC 2.2.1.1) (TK)| Length = 662 Score = 28.9 bits (63), Expect = 8.9 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%) Frame = +2 Query: 89 FKEEIEGQGLDGQVAVSACSHVGGHKY---AGNVII---FSPDAKGEVTGHWYGY 235 +KE + + +VA+ S +G HKY AG VI F A G++ YG+ Sbjct: 596 YKESVIPSSVTKRVAIEMASPLGWHKYVGTAGKVIAIDGFGASAPGDLVVEKYGF 650
>TKT_STAAM (P66962) Transketolase (EC 2.2.1.1) (TK)| Length = 662 Score = 28.9 bits (63), Expect = 8.9 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%) Frame = +2 Query: 89 FKEEIEGQGLDGQVAVSACSHVGGHKY---AGNVII---FSPDAKGEVTGHWYGY 235 +KE + + +VA+ S +G HKY AG VI F A G++ YG+ Sbjct: 596 YKESVIPSSVTKRVAIEMASPLGWHKYVGTAGKVIAIDGFGASAPGDLVVEKYGF 650
>TKT_STAAC (Q5HG77) Transketolase (EC 2.2.1.1)| Length = 662 Score = 28.9 bits (63), Expect = 8.9 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%) Frame = +2 Query: 89 FKEEIEGQGLDGQVAVSACSHVGGHKY---AGNVII---FSPDAKGEVTGHWYGY 235 +KE + + +VA+ S +G HKY AG VI F A G++ YG+ Sbjct: 596 YKESVIPSSVTKRVAIEMASPLGWHKYVGTAGKVIAIDGFGASAPGDLVVEKYGF 650
>CBPD_RAT (Q9JHW1) Carboxypeptidase D precursor (EC 3.4.17.22)| (Metallocarboxypeptidase D) (gp180) Length = 1378 Score = 28.9 bits (63), Expect = 8.9 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 5/37 (13%) Frame = -1 Query: 516 GRSLW-----QQVNPPPLPWQHPPAGVGLQAAAPLVP 421 GR LW + PPP P A VGL AA PL+P Sbjct: 96 GRPLWVLRLTAGLGPPPTP-----AAVGLDAAGPLLP 127
>BARH1_DROME (Q24255) Homeobox protein B-H1 (Homeobox protein BarH1)| Length = 544 Score = 28.9 bits (63), Expect = 8.9 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 8/93 (8%) Frame = -2 Query: 467 IHLQV*GCKQQHRWFHLLQGILWRLILPQLRHSSHA*APELFSAALQTNPTGPSTDGPQS 288 +H + +QQH HL G L P + HS H+ + S T +G Sbjct: 22 LHHHLSTLQQQHHQHHLHYG----LQPPAVAHSIHS-TTTMSSGGSTTTASGIGKPNRSR 76 Query: 287 LLVQYVDAVT--------QAHHQEQHNHTNDQS 213 ++ + A + Q HHQ+ H+H N+ + Sbjct: 77 FMINDILAGSAAAAFYKQQQHHQQLHHHNNNNN 109
>WDR68_MOUSE (P61963) WD-repeat protein 68 (WD-repeat protein An11 homolog)| Length = 342 Score = 28.9 bits (63), Expect = 8.9 Identities = 13/54 (24%), Positives = 26/54 (48%) Frame = +2 Query: 47 DKRCGVCGPALITRFKEEIEGQGLDGQVAVSACSHVGGHKYAGNVIIFSPDAKG 208 DKR + + + + +++ GLD + + C + H Y +++ PD KG Sbjct: 29 DKRFRLALGSFVEEYNNKVQLVGLDEESSEFICRNTFDHPYPTTKLMWIPDTKG 82
>WDR68_HUMAN (P61962) WD-repeat protein 68 (WD-repeat protein An11 homolog)| Length = 342 Score = 28.9 bits (63), Expect = 8.9 Identities = 13/54 (24%), Positives = 26/54 (48%) Frame = +2 Query: 47 DKRCGVCGPALITRFKEEIEGQGLDGQVAVSACSHVGGHKYAGNVIIFSPDAKG 208 DKR + + + + +++ GLD + + C + H Y +++ PD KG Sbjct: 29 DKRFRLALGSFVEEYNNKVQLVGLDEESSEFICRNTFDHPYPTTKLMWIPDTKG 82 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,948,606 Number of Sequences: 219361 Number of extensions: 1820078 Number of successful extensions: 5733 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 5436 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5728 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
