ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baalo17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_467558.1| Oryza sativa (japonica cultivar-group), mRNA 363 4e-97
2ref|XM_506948.1| PREDICTED Oryza sativa (japonica cultivar-group... 363 4e-97
3dbj|AK104276.1| Oryza sativa (japonica cultivar-group) cDNA clon... 363 4e-97
4dbj|AK071759.1| Oryza sativa (japonica cultivar-group) cDNA clon... 363 4e-97
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 238 1e-59
6dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic D... 238 1e-59
7dbj|AP004179.3| Oryza sativa (japonica cultivar-group) genomic D... 238 1e-59
8emb|CR962136.2| Medicago truncatula chromosome 5 clone mth2-52n2... 50 0.007
9ref|NM_113673.3| Arabidopsis thaliana unknown protein AT3G27570 ... 44 0.45
10gb|AY090299.1| Arabidopsis thaliana AT3g27570/MMJ24_12 mRNA, com... 44 0.45
11gb|AY058067.1| Arabidopsis thaliana AT3g27570/MMJ24_12 mRNA, com... 44 0.45
12dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.45
13emb|BX823003.1|CNS0A76F Arabidopsis thaliana Full-length cDNA Co... 44 0.45
14emb|BX824053.1|CNS0A6WO Arabidopsis thaliana Full-length cDNA Co... 44 0.45
15gb|AY089161.1| Arabidopsis thaliana clone 40179 mRNA, complete s... 44 0.45
16dbj|AP004617.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.45
17emb|AL672284.15| Mouse DNA sequence from clone RP23-39I7 on chro... 44 0.45
18ref|XM_641697.1| Dictyostelium discoideum hypothetical protein (... 42 1.8
19gb|AE006681.1| Sulfolobus solfataricus P2 section 40 of 272 of t... 42 1.8
20gb|AC100738.8| Mus musculus chromosome 15, clone RP24-362K21, co... 42 1.8
21gb|AE014133.1| Streptococcus mutans UA159, complete genome 42 1.8
22gb|BC109352.1| Mus musculus RIKEN cDNA 1190002A17 gene, mRNA (cD... 40 7.0
23ref|NM_014485.2| Homo sapiens prostaglandin D2 synthase, hematop... 40 7.0
24gb|BC100481.1| Mus musculus RIKEN cDNA 1190002A17 gene, mRNA (cD... 40 7.0
25ref|XM_959349.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.0
26ref|XM_330389.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.0
27ref|NM_001033874.1| Mus musculus RIKEN cDNA 1190002A17 gene (119... 40 7.0
28gb|AC146106.3| Pan troglodytes BAC clone RP43-5I17 from 7, compl... 40 7.0
29gb|AC092676.2| Homo sapiens BAC clone RP11-641E23 from 7, comple... 40 7.0
30gb|AC107482.2| Homo sapiens 3p BAC RP11-271J8 (Roswell Park Canc... 40 7.0
31gb|AC146329.19| Medicago truncatula clone mth2-5i21, complete se... 40 7.0
32emb|AL662874.9| Human DNA sequence from clone RP13-24G8 on chrom... 40 7.0
33emb|AL390719.47| Human DNA sequence from clone RP11-465B22 on ch... 40 7.0
34emb|AL390959.12| Human DNA sequence from clone RP1-44L3 on chrom... 40 7.0
35emb|BX569693.1| Synechococcus sp. WH8102 complete genome; segmen... 40 7.0
36emb|BX571953.9| Zebrafish DNA sequence from clone RP71-69B23 in ... 40 7.0
37emb|CR622166.1| full-length cDNA clone CS0DI056YL24 of Placenta ... 40 7.0
38emb|CR619711.1| full-length cDNA clone CS0DI049YN24 of Placenta ... 40 7.0
39gb|AC182634.3| Gallus gallus BAC clone CH261-141O9 from chromoso... 40 7.0
40gb|AC108142.3| Homo sapiens BAC clone RP11-402C9 from 4, complet... 40 7.0
41gb|AC096746.3| Homo sapiens BAC clone RP11-363G15 from 4, comple... 40 7.0
42gb|AC106821.2| Homo sapiens chromosome 5 clone RP11-730N24, comp... 40 7.0
43dbj|AK004439.1| Mus musculus 18-day embryo whole body cDNA, RIKE... 40 7.0
44gb|AC008192.8|AC008192 Drosophila melanogaster, chromosome 3R, r... 40 7.0
45gb|AC152506.2| Pan troglodytes BAC clone RP43-4B9 from chromosom... 40 7.0
46gb|AC019086.7| Homo sapiens BAC clone RP11-360H4 from 2, complet... 40 7.0
47gb|AC010142.4|AC010142 Homo sapiens BAC clone RP11-240N18 from Y... 40 7.0
48gb|AY989819.1| Fragaria x ananassa beta-1,3-glucanase (BG2-3) mR... 40 7.0
49gb|AC151053.2| Mus musculus BAC clone RP23-402A4 from 7, complet... 40 7.0
50gb|AE003726.3| Drosophila melanogaster chromosome 3R, section 64... 40 7.0
51gb|AC145949.3| Gallus gallus BAC clone CH261-29A22 from chromoso... 40 7.0
52emb|AL731851.13| Mouse DNA sequence from clone RP23-362N19 on ch... 40 7.0

>ref|XM_467558.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1454

 Score =  363 bits (183), Expect = 4e-97
 Identities = 312/355 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggctataaaaggttcctatgtttttgtctgctgccatggaagcagggataaaaggtgtgg 60
           ||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||
Sbjct: 576 ggctataaaaggttcctatgtttttgtttgctgccatgcaagcagggataagaggtgtgg 635

                                                                       
Query: 61  tgtttgcggtcctgctctgattacaaggttcaaggaagagattgaaggacaaggtcttga 120
           ||| || || |||||| ||||||  ||||||||||||||||| |  | |||||| |||| 
Sbjct: 636 tgtctgtggacctgctttgattaagaggttcaaggaagagataggtgtacaaggccttgc 695

                                                                       
Query: 121 tggtcaggtggctgttagtgcatgctcacacgttggaggtcacaagtatgcaggaaatgt 180
           || ||||||| | || |||||||||||||| || ||||| || |||||||||||||||||
Sbjct: 696 tgatcaggtgtcagtcagtgcatgctcacatgtgggaggccataagtatgcaggaaatgt 755

                                                                       
Query: 181 catcatattcagtccagatgccaagggagaagtgactggtcattggtatggttatgttgc 240
           |||  | |||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 756 cattgttttcagtgcagatgccaagggagaagtgactggtcattggtatggttatgtttc 815

                                                                       
Query: 241 tcctgatgatgtgcctgtgttactgcgtcaacatattggacaaggagagattgtgggcca 300
           |||||||||||||||||| || || | | |||||||||||||||||||||| |||| |||
Sbjct: 816 tcctgatgatgtgcctgtcttgctacataaacatattggacaaggagagatcgtggacca 875

                                                                  
Query: 301 tctgtggaggggccagttgggtttgtctgaagagcagcagaaaaaagctctggag 355
           ||| |||||||| ||| ||||||||||||||||  ||||||  ||||| ||||||
Sbjct: 876 tctatggaggggtcagatgggtttgtctgaagaagagcagaggaaagccctggag 930



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 69/80 (86%), Gaps = 3/80 (3%)
 Strand = Plus / Plus

                                                                        
Query: 438  ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 497
            ||||||||||||||    |||||||||| |||||||||||||||   ||||| || ||||
Sbjct: 1001 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 1057

                                
Query: 498  gctgccaaagtgatctgcca 517
            ||||||| ||||||||||||
Sbjct: 1058 gctgccagagtgatctgcca 1077



to top

>ref|XM_506948.1| PREDICTED Oryza sativa (japonica cultivar-group), P0685G12.41 mRNA
          Length = 1611

 Score =  363 bits (183), Expect = 4e-97
 Identities = 312/355 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggctataaaaggttcctatgtttttgtctgctgccatggaagcagggataaaaggtgtgg 60
           ||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||
Sbjct: 575 ggctataaaaggttcctatgtttttgtttgctgccatgcaagcagggataagaggtgtgg 634

                                                                       
Query: 61  tgtttgcggtcctgctctgattacaaggttcaaggaagagattgaaggacaaggtcttga 120
           ||| || || |||||| ||||||  ||||||||||||||||| |  | |||||| |||| 
Sbjct: 635 tgtctgtggacctgctttgattaagaggttcaaggaagagataggtgtacaaggccttgc 694

                                                                       
Query: 121 tggtcaggtggctgttagtgcatgctcacacgttggaggtcacaagtatgcaggaaatgt 180
           || ||||||| | || |||||||||||||| || ||||| || |||||||||||||||||
Sbjct: 695 tgatcaggtgtcagtcagtgcatgctcacatgtgggaggccataagtatgcaggaaatgt 754

                                                                       
Query: 181 catcatattcagtccagatgccaagggagaagtgactggtcattggtatggttatgttgc 240
           |||  | |||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 755 cattgttttcagtgcagatgccaagggagaagtgactggtcattggtatggttatgtttc 814

                                                                       
Query: 241 tcctgatgatgtgcctgtgttactgcgtcaacatattggacaaggagagattgtgggcca 300
           |||||||||||||||||| || || | | |||||||||||||||||||||| |||| |||
Sbjct: 815 tcctgatgatgtgcctgtcttgctacataaacatattggacaaggagagatcgtggacca 874

                                                                  
Query: 301 tctgtggaggggccagttgggtttgtctgaagagcagcagaaaaaagctctggag 355
           ||| |||||||| ||| ||||||||||||||||  ||||||  ||||| ||||||
Sbjct: 875 tctatggaggggtcagatgggtttgtctgaagaagagcagaggaaagccctggag 929



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 69/80 (86%), Gaps = 3/80 (3%)
 Strand = Plus / Plus

                                                                        
Query: 438  ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 497
            ||||||||||||||    |||||||||| |||||||||||||||   ||||| || ||||
Sbjct: 1000 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 1056

                                
Query: 498  gctgccaaagtgatctgcca 517
            ||||||| ||||||||||||
Sbjct: 1057 gctgccagagtgatctgcca 1076



to top

>dbj|AK104276.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-A01, full
           insert sequence
          Length = 1454

 Score =  363 bits (183), Expect = 4e-97
 Identities = 312/355 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggctataaaaggttcctatgtttttgtctgctgccatggaagcagggataaaaggtgtgg 60
           ||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||
Sbjct: 576 ggctataaaaggttcctatgtttttgtttgctgccatgcaagcagggataagaggtgtgg 635

                                                                       
Query: 61  tgtttgcggtcctgctctgattacaaggttcaaggaagagattgaaggacaaggtcttga 120
           ||| || || |||||| ||||||  ||||||||||||||||| |  | |||||| |||| 
Sbjct: 636 tgtctgtggacctgctttgattaagaggttcaaggaagagataggtgtacaaggccttgc 695

                                                                       
Query: 121 tggtcaggtggctgttagtgcatgctcacacgttggaggtcacaagtatgcaggaaatgt 180
           || ||||||| | || |||||||||||||| || ||||| || |||||||||||||||||
Sbjct: 696 tgatcaggtgtcagtcagtgcatgctcacatgtgggaggccataagtatgcaggaaatgt 755

                                                                       
Query: 181 catcatattcagtccagatgccaagggagaagtgactggtcattggtatggttatgttgc 240
           |||  | |||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 756 cattgttttcagtgcagatgccaagggagaagtgactggtcattggtatggttatgtttc 815

                                                                       
Query: 241 tcctgatgatgtgcctgtgttactgcgtcaacatattggacaaggagagattgtgggcca 300
           |||||||||||||||||| || || | | |||||||||||||||||||||| |||| |||
Sbjct: 816 tcctgatgatgtgcctgtcttgctacataaacatattggacaaggagagatcgtggacca 875

                                                                  
Query: 301 tctgtggaggggccagttgggtttgtctgaagagcagcagaaaaaagctctggag 355
           ||| |||||||| ||| ||||||||||||||||  ||||||  ||||| ||||||
Sbjct: 876 tctatggaggggtcagatgggtttgtctgaagaagagcagaggaaagccctggag 930



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 69/80 (86%), Gaps = 3/80 (3%)
 Strand = Plus / Plus

                                                                        
Query: 438  ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 497
            ||||||||||||||    |||||||||| |||||||||||||||   ||||| || ||||
Sbjct: 1001 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 1057

                                
Query: 498  gctgccaaagtgatctgcca 517
            ||||||| ||||||||||||
Sbjct: 1058 gctgccagagtgatctgcca 1077



to top

>dbj|AK071759.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109C03, full
           insert sequence
          Length = 1611

 Score =  363 bits (183), Expect = 4e-97
 Identities = 312/355 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggctataaaaggttcctatgtttttgtctgctgccatggaagcagggataaaaggtgtgg 60
           ||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||
Sbjct: 575 ggctataaaaggttcctatgtttttgtttgctgccatgcaagcagggataagaggtgtgg 634

                                                                       
Query: 61  tgtttgcggtcctgctctgattacaaggttcaaggaagagattgaaggacaaggtcttga 120
           ||| || || |||||| ||||||  ||||||||||||||||| |  | |||||| |||| 
Sbjct: 635 tgtctgtggacctgctttgattaagaggttcaaggaagagataggtgtacaaggccttgc 694

                                                                       
Query: 121 tggtcaggtggctgttagtgcatgctcacacgttggaggtcacaagtatgcaggaaatgt 180
           || ||||||| | || |||||||||||||| || ||||| || |||||||||||||||||
Sbjct: 695 tgatcaggtgtcagtcagtgcatgctcacatgtgggaggccataagtatgcaggaaatgt 754

                                                                       
Query: 181 catcatattcagtccagatgccaagggagaagtgactggtcattggtatggttatgttgc 240
           |||  | |||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 755 cattgttttcagtgcagatgccaagggagaagtgactggtcattggtatggttatgtttc 814

                                                                       
Query: 241 tcctgatgatgtgcctgtgttactgcgtcaacatattggacaaggagagattgtgggcca 300
           |||||||||||||||||| || || | | |||||||||||||||||||||| |||| |||
Sbjct: 815 tcctgatgatgtgcctgtcttgctacataaacatattggacaaggagagatcgtggacca 874

                                                                  
Query: 301 tctgtggaggggccagttgggtttgtctgaagagcagcagaaaaaagctctggag 355
           ||| |||||||| ||| ||||||||||||||||  ||||||  ||||| ||||||
Sbjct: 875 tctatggaggggtcagatgggtttgtctgaagaagagcagaggaaagccctggag 929



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 69/80 (86%), Gaps = 3/80 (3%)
 Strand = Plus / Plus

                                                                        
Query: 438  ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 497
            ||||||||||||||    |||||||||| |||||||||||||||   ||||| || ||||
Sbjct: 1000 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 1056

                                
Query: 498  gctgccaaagtgatctgcca 517
            ||||||| ||||||||||||
Sbjct: 1057 gctgccagagtgatctgcca 1076



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  238 bits (120), Expect = 1e-59
 Identities = 201/228 (88%)
 Strand = Plus / Minus

                                                                            
Query: 1        ggctataaaaggttcctatgtttttgtctgctgccatggaagcagggataaaaggtgtgg 60
                ||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||
Sbjct: 30160339 ggctataaaaggttcctatgtttttgtttgctgccatgcaagcagggataagaggtgtgg 30160280

                                                                            
Query: 61       tgtttgcggtcctgctctgattacaaggttcaaggaagagattgaaggacaaggtcttga 120
                ||| || || |||||| ||||||  ||||||||||||||||| |  | |||||| |||| 
Sbjct: 30160279 tgtctgtggacctgctttgattaagaggttcaaggaagagataggtgtacaaggccttgc 30160220

                                                                            
Query: 121      tggtcaggtggctgttagtgcatgctcacacgttggaggtcacaagtatgcaggaaatgt 180
                || ||||||| | || |||||||||||||| || ||||| || |||||||||||||||||
Sbjct: 30160219 tgatcaggtgtcagtcagtgcatgctcacatgtgggaggccataagtatgcaggaaatgt 30160160

                                                                
Query: 181      catcatattcagtccagatgccaagggagaagtgactggtcattggta 228
                |||  | |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 30160159 cattgttttcagtgcagatgccaagggagaagtgactggtcattggta 30160112



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                            
Query: 225      ggtatggttatgttgctcctgatgatgtgcctgtgttactgcgtcaacatattggacaag 284
                |||||||||||||| ||||||||||||||||||| || || | | |||||||||||||||
Sbjct: 30159995 ggtatggttatgtttctcctgatgatgtgcctgtcttgctacataaacatattggacaag 30159936

                                          
Query: 285      gagagattgtgggccatctgtggagg 310
                ||||||| |||| |||||| ||||||
Sbjct: 30159935 gagagatcgtggaccatctatggagg 30159910



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 69/80 (86%), Gaps = 3/80 (3%)
 Strand = Plus / Minus

                                                                            
Query: 438      ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 497
                ||||||||||||||    |||||||||| |||||||||||||||   ||||| || ||||
Sbjct: 30158857 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 30158801

                                    
Query: 498      gctgccaaagtgatctgcca 517
                ||||||| ||||||||||||
Sbjct: 30158800 gctgccagagtgatctgcca 30158781



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                                
Query: 308      aggggccagttgggtttgtctgaagagcagcagaaaaaagctctggag 355
                ||||| ||| ||||||||||||||||  ||||||  ||||| ||||||
Sbjct: 30158975 aggggtcagatgggtttgtctgaagaagagcagaggaaagccctggag 30158928



to top

>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0685G12
          Length = 149155

 Score =  238 bits (120), Expect = 1e-59
 Identities = 201/228 (88%)
 Strand = Plus / Minus

                                                                          
Query: 1      ggctataaaaggttcctatgtttttgtctgctgccatggaagcagggataaaaggtgtgg 60
              ||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||
Sbjct: 139936 ggctataaaaggttcctatgtttttgtttgctgccatgcaagcagggataagaggtgtgg 139877

                                                                          
Query: 61     tgtttgcggtcctgctctgattacaaggttcaaggaagagattgaaggacaaggtcttga 120
              ||| || || |||||| ||||||  ||||||||||||||||| |  | |||||| |||| 
Sbjct: 139876 tgtctgtggacctgctttgattaagaggttcaaggaagagataggtgtacaaggccttgc 139817

                                                                          
Query: 121    tggtcaggtggctgttagtgcatgctcacacgttggaggtcacaagtatgcaggaaatgt 180
              || ||||||| | || |||||||||||||| || ||||| || |||||||||||||||||
Sbjct: 139816 tgatcaggtgtcagtcagtgcatgctcacatgtgggaggccataagtatgcaggaaatgt 139757

                                                              
Query: 181    catcatattcagtccagatgccaagggagaagtgactggtcattggta 228
              |||  | |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 139756 cattgttttcagtgcagatgccaagggagaagtgactggtcattggta 139709



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                          
Query: 225    ggtatggttatgttgctcctgatgatgtgcctgtgttactgcgtcaacatattggacaag 284
              |||||||||||||| ||||||||||||||||||| || || | | |||||||||||||||
Sbjct: 139592 ggtatggttatgtttctcctgatgatgtgcctgtcttgctacataaacatattggacaag 139533

                                        
Query: 285    gagagattgtgggccatctgtggagg 310
              ||||||| |||| |||||| ||||||
Sbjct: 139532 gagagatcgtggaccatctatggagg 139507



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 69/80 (86%), Gaps = 3/80 (3%)
 Strand = Plus / Minus

                                                                          
Query: 438    ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 497
              ||||||||||||||    |||||||||| |||||||||||||||   ||||| || ||||
Sbjct: 138454 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 138398

                                  
Query: 498    gctgccaaagtgatctgcca 517
              ||||||| ||||||||||||
Sbjct: 138397 gctgccagagtgatctgcca 138378



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                              
Query: 308    aggggccagttgggtttgtctgaagagcagcagaaaaaagctctggag 355
              ||||| ||| ||||||||||||||||  ||||||  ||||| ||||||
Sbjct: 138572 aggggtcagatgggtttgtctgaagaagagcagaggaaagccctggag 138525



to top

>dbj|AP004179.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1124_G07
          Length = 93240

 Score =  238 bits (120), Expect = 1e-59
 Identities = 201/228 (88%)
 Strand = Plus / Minus

                                                                         
Query: 1     ggctataaaaggttcctatgtttttgtctgctgccatggaagcagggataaaaggtgtgg 60
             ||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||
Sbjct: 33043 ggctataaaaggttcctatgtttttgtttgctgccatgcaagcagggataagaggtgtgg 32984

                                                                         
Query: 61    tgtttgcggtcctgctctgattacaaggttcaaggaagagattgaaggacaaggtcttga 120
             ||| || || |||||| ||||||  ||||||||||||||||| |  | |||||| |||| 
Sbjct: 32983 tgtctgtggacctgctttgattaagaggttcaaggaagagataggtgtacaaggccttgc 32924

                                                                         
Query: 121   tggtcaggtggctgttagtgcatgctcacacgttggaggtcacaagtatgcaggaaatgt 180
             || ||||||| | || |||||||||||||| || ||||| || |||||||||||||||||
Sbjct: 32923 tgatcaggtgtcagtcagtgcatgctcacatgtgggaggccataagtatgcaggaaatgt 32864

                                                             
Query: 181   catcatattcagtccagatgccaagggagaagtgactggtcattggta 228
             |||  | |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 32863 cattgttttcagtgcagatgccaagggagaagtgactggtcattggta 32816



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                         
Query: 225   ggtatggttatgttgctcctgatgatgtgcctgtgttactgcgtcaacatattggacaag 284
             |||||||||||||| ||||||||||||||||||| || || | | |||||||||||||||
Sbjct: 32699 ggtatggttatgtttctcctgatgatgtgcctgtcttgctacataaacatattggacaag 32640

                                       
Query: 285   gagagattgtgggccatctgtggagg 310
             ||||||| |||| |||||| ||||||
Sbjct: 32639 gagagatcgtggaccatctatggagg 32614



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 69/80 (86%), Gaps = 3/80 (3%)
 Strand = Plus / Minus

                                                                         
Query: 438   ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 497
             ||||||||||||||    |||||||||| |||||||||||||||   ||||| || ||||
Sbjct: 31561 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 31505

                                 
Query: 498   gctgccaaagtgatctgcca 517
             ||||||| ||||||||||||
Sbjct: 31504 gctgccagagtgatctgcca 31485



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                             
Query: 308   aggggccagttgggtttgtctgaagagcagcagaaaaaagctctggag 355
             ||||| ||| ||||||||||||||||  ||||||  ||||| ||||||
Sbjct: 31679 aggggtcagatgggtttgtctgaagaagagcagaggaaagccctggag 31632



to top

>emb|CR962136.2| Medicago truncatula chromosome 5 clone mth2-52n22, COMPLETE SEQUENCE
          Length = 87738

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                              
Query: 141   catgctcacacgttggaggtcacaagtatgcaggaaatgtcatcatatt 189
             ||||||| ||| |||| || || |||||||||||||||||||| |||||
Sbjct: 27902 catgctcgcacattgggggacataagtatgcaggaaatgtcattatatt 27854



to top

>ref|NM_113673.3| Arabidopsis thaliana unknown protein AT3G27570 mRNA, complete cds
          Length = 1475

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 216 ctggtcattggtatggttatgttgctcctgatgatgtgcctg 257
           |||| ||||||||||| |||||  |||||||||| |||||||
Sbjct: 786 ctggccattggtatggctatgtgactcctgatgacgtgcctg 827



to top

>gb|AY090299.1| Arabidopsis thaliana AT3g27570/MMJ24_12 mRNA, complete cds
          Length = 1023

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 216 ctggtcattggtatggttatgttgctcctgatgatgtgcctg 257
           |||| ||||||||||| |||||  |||||||||| |||||||
Sbjct: 614 ctggccattggtatggctatgtgactcctgatgacgtgcctg 655



to top

>gb|AY058067.1| Arabidopsis thaliana AT3g27570/MMJ24_12 mRNA, complete cds
          Length = 1329

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 216 ctggtcattggtatggttatgttgctcctgatgatgtgcctg 257
           |||| ||||||||||| |||||  |||||||||| |||||||
Sbjct: 699 ctggccattggtatggctatgtgactcctgatgacgtgcctg 740



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 429      acggtgctgctgcttgcaaccc 450
                ||||||||||||||||||||||
Sbjct: 20715803 acggtgctgctgcttgcaaccc 20715824



to top

>emb|BX823003.1|CNS0A76F Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB7ZE10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1312

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 216 ctggtcattggtatggttatgttgctcctgatgatgtgcctg 257
           |||| ||||||||||| |||||  |||||||||| |||||||
Sbjct: 710 ctggccattggtatggctatgtgactcctgatgacgtgcctg 751



to top

>emb|BX824053.1|CNS0A6WO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH19ZA08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1373

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 216 ctggtcattggtatggttatgttgctcctgatgatgtgcctg 257
           |||| ||||||||||| |||||  |||||||||| |||||||
Sbjct: 787 ctggccattggtatggctatgtgactcctgatgacgtgcctg 828



to top

>gb|AY089161.1| Arabidopsis thaliana clone 40179 mRNA, complete sequence
          Length = 1355

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 216 ctggtcattggtatggttatgttgctcctgatgatgtgcctg 257
           |||| ||||||||||| |||||  |||||||||| |||||||
Sbjct: 710 ctggccattggtatggctatgtgactcctgatgacgtgcctg 751



to top

>dbj|AP004617.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0479C08
          Length = 152460

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 429   acggtgctgctgcttgcaaccc 450
             ||||||||||||||||||||||
Sbjct: 88256 acggtgctgctgcttgcaaccc 88277



to top

>emb|AL672284.15| Mouse DNA sequence from clone RP23-39I7 on chromosome X, complete
             sequence
          Length = 227918

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 398   gccaaagaatcccctgaagcaa 419
             ||||||||||||||||||||||
Sbjct: 65835 gccaaagaatcccctgaagcaa 65856



to top

>ref|XM_641697.1| Dictyostelium discoideum hypothetical protein (DDB0191047), partial
           mRNA
          Length = 966

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 224 tggtatggttatgttgctcctgatgatgt 252
           ||||||||||||||  |||||||||||||
Sbjct: 838 tggtatggttatgtaactcctgatgatgt 866



to top

>gb|AE006681.1| Sulfolobus solfataricus P2 section 40 of 272 of the complete genome
          Length = 13348

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 79   gattacaaggttcaaggaagagatt 103
            ||||||||| |||||||||||||||
Sbjct: 7879 gattacaagattcaaggaagagatt 7903



to top

>gb|AC100738.8| Mus musculus chromosome 15, clone RP24-362K21, complete sequence
          Length = 128950

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 409   ccctgaagcaaatggaaccaa 429
             |||||||||||||||||||||
Sbjct: 86353 ccctgaagcaaatggaaccaa 86333



to top

>gb|AE014133.1| Streptococcus mutans UA159, complete genome
          Length = 2030921

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 255     ctgtgttactgcgtcaacata 275
               |||||||||||||||||||||
Sbjct: 1592834 ctgtgttactgcgtcaacata 1592854



to top

>gb|BC109352.1| Mus musculus RIKEN cDNA 1190002A17 gene, mRNA (cDNA clone
           MGC:130365 IMAGE:40057006), complete cds
          Length = 1545

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 241 tcctgatgatgtgcctgtgttact 264
           ||||||||||||||||||| ||||
Sbjct: 702 tcctgatgatgtgcctgtggtact 679



to top

>ref|NM_014485.2| Homo sapiens prostaglandin D2 synthase, hematopoietic (PGDS), mRNA
          Length = 1615

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 208  agaagtgactggtcattggt 227
            ||||||||||||||||||||
Sbjct: 1141 agaagtgactggtcattggt 1122



to top

>gb|BC100481.1| Mus musculus RIKEN cDNA 1190002A17 gene, mRNA (cDNA clone
           MGC:118311 IMAGE:30917849), complete cds
          Length = 1589

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 241 tcctgatgatgtgcctgtgttact 264
           ||||||||||||||||||| ||||
Sbjct: 712 tcctgatgatgtgcctgtggtact 689



to top

>ref|XM_959349.1| Neurospora crassa OR74A hypothetical protein (NCU09740.1) partial
            mRNA
          Length = 8457

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 241  tcctgatgatgtgcctgtgttact 264
            ||||||| ||||||||||||||||
Sbjct: 5673 tcctgataatgtgcctgtgttact 5696



to top

>ref|XM_330389.1| Neurospora crassa OR74A hypothetical protein (NCU09740.1) partial
            mRNA
          Length = 8457

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 241  tcctgatgatgtgcctgtgttact 264
            ||||||| ||||||||||||||||
Sbjct: 5673 tcctgataatgtgcctgtgttact 5696



to top

>ref|NM_001033874.1| Mus musculus RIKEN cDNA 1190002A17 gene (1190002A17Rik), mRNA
          Length = 1589

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 241 tcctgatgatgtgcctgtgttact 264
           ||||||||||||||||||| ||||
Sbjct: 712 tcctgatgatgtgcctgtggtact 689



to top

>gb|AC146106.3| Pan troglodytes BAC clone RP43-5I17 from 7, complete sequence
          Length = 221821

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     tgtttttgtctgctgccatg 38
              ||||||||||||||||||||
Sbjct: 111715 tgtttttgtctgctgccatg 111696



to top

>gb|AC092676.2| Homo sapiens BAC clone RP11-641E23 from 7, complete sequence
          Length = 118035

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    tgtttttgtctgctgccatg 38
             ||||||||||||||||||||
Sbjct: 41790 tgtttttgtctgctgccatg 41771



to top

>gb|AC107482.2| Homo sapiens 3p BAC RP11-271J8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 180631

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   tgatggtcaggtggctgtta 137
             ||||||||||||||||||||
Sbjct: 37012 tgatggtcaggtggctgtta 37031



to top

>gb|AC146329.19| Medicago truncatula clone mth2-5i21, complete sequence
          Length = 142834

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 493   aacctgctgccaaagtgatc 512
             ||||||||||||||||||||
Sbjct: 59184 aacctgctgccaaagtgatc 59203



to top

>emb|AL662874.9| Human DNA sequence from clone RP13-24G8 on chromosome X Contains a
             novel gene, a delta sleep inducing peptide, immunoreactor
             (DSIPI) pseudogene, the PABPC5 gene for poly(A) binding
             protein, cytoplasmic 5 and a CpG island, complete sequence
          Length = 160906

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   acaaggagagattgtgggcc 299
             ||||||||||||||||||||
Sbjct: 96053 acaaggagagattgtgggcc 96034



to top

>emb|AL390719.47| Human DNA sequence from clone RP11-465B22 on chromosome 1 Contains a
             novel gene, a novel gene, a protein tyrosine phosphatase
             family pseudogene, a novel gene (FLJ20584), a novel gene,
             a novel gene, a novel gene (FLJ36119) and five CpG
             islands, complete sequence
          Length = 130979

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   tgatggtcaggtggctgtta 137
             ||||||||||||||||||||
Sbjct: 51210 tgatggtcaggtggctgtta 51229



to top

>emb|AL390959.12| Human DNA sequence from clone RP1-44L3 on chromosome 6 Contains a CpG
             island, complete sequence
          Length = 105239

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   tgatggtcaggtggctgtta 137
             ||||||||||||||||||||
Sbjct: 81760 tgatggtcaggtggctgtta 81741



to top

>emb|BX569693.1| Synechococcus sp. WH8102 complete genome; segment 5/7
          Length = 349213

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 379    aactgaggaagaatcaagcgccaa 402
              ||||||||||||||||| ||||||
Sbjct: 103289 aactgaggaagaatcaatcgccaa 103312



to top

>emb|BX571953.9| Zebrafish DNA sequence from clone RP71-69B23 in linkage group 13,
             complete sequence
          Length = 144282

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 325   gtctgaagagcagcagaaaa 344
             ||||||||||||||||||||
Sbjct: 94160 gtctgaagagcagcagaaaa 94179



to top

>emb|CR622166.1| full-length cDNA clone CS0DI056YL24 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 1581

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 208  agaagtgactggtcattggt 227
            ||||||||||||||||||||
Sbjct: 1086 agaagtgactggtcattggt 1067



to top

>emb|CR619711.1| full-length cDNA clone CS0DI049YN24 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 1586

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 208  agaagtgactggtcattggt 227
            ||||||||||||||||||||
Sbjct: 1112 agaagtgactggtcattggt 1093



to top

>gb|AC182634.3| Gallus gallus BAC clone CH261-141O9 from chromosome 1, complete
             sequence
          Length = 187635

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   catattcagtccagatgcca 203
             ||||||||||||||||||||
Sbjct: 50551 catattcagtccagatgcca 50570



to top

>gb|AC108142.3| Homo sapiens BAC clone RP11-402C9 from 4, complete sequence
          Length = 62624

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   cagtccagatgccaagggag 209
             ||||||||||||||||||||
Sbjct: 31091 cagtccagatgccaagggag 31072



to top

>gb|AC096746.3| Homo sapiens BAC clone RP11-363G15 from 4, complete sequence
          Length = 158944

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 208    agaagtgactggtcattggt 227
              ||||||||||||||||||||
Sbjct: 142155 agaagtgactggtcattggt 142174



to top

>gb|AC106821.2| Homo sapiens chromosome 5 clone RP11-730N24, complete sequence
          Length = 151355

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   gagattgtgggccatctgtg 306
             ||||||||||||||||||||
Sbjct: 85902 gagattgtgggccatctgtg 85883



to top

>dbj|AK004439.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length
           enriched library, clone:1190002A17 product:hypothetical
           Adenylate kinase containing protein, full insert
           sequence
          Length = 1559

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 241 tcctgatgatgtgcctgtgttact 264
           ||||||||||||||||||| ||||
Sbjct: 713 tcctgatgatgtgcctgtggtact 690



to top

>gb|AC008192.8|AC008192 Drosophila melanogaster, chromosome 3R, region 92A-92A, BAC clone
             BACR12P10, complete sequence
          Length = 186686

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   ctgaagagcagcagaaaaaa 346
             ||||||||||||||||||||
Sbjct: 94951 ctgaagagcagcagaaaaaa 94970



to top

>gb|AC152506.2| Pan troglodytes BAC clone RP43-4B9 from chromosome 7, complete sequence
          Length = 181146

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    tgtttttgtctgctgccatg 38
             ||||||||||||||||||||
Sbjct: 74719 tgtttttgtctgctgccatg 74700



to top

>gb|AC019086.7| Homo sapiens BAC clone RP11-360H4 from 2, complete sequence
          Length = 199934

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   tgatggtcaggtggctgtta 137
             ||||||||||||||||||||
Sbjct: 12897 tgatggtcaggtggctgtta 12878



to top

>gb|AC010142.4|AC010142 Homo sapiens BAC clone RP11-240N18 from Y, complete sequence
          Length = 136462

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   acaaggagagattgtgggcc 299
             ||||||||||||||||||||
Sbjct: 72341 acaaggagagattgtgggcc 72322



to top

>gb|AY989819.1| Fragaria x ananassa beta-1,3-glucanase (BG2-3) mRNA, complete cds
          Length = 1271

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 9    aaggttcctatgtttttgtc 28
            ||||||||||||||||||||
Sbjct: 1193 aaggttcctatgtttttgtc 1212



to top

>gb|AC151053.2| Mus musculus BAC clone RP23-402A4 from 7, complete sequence
          Length = 201862

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   gccatctgtggaggggccag 316
             ||||||||||||||||||||
Sbjct: 47526 gccatctgtggaggggccag 47507



to top

>gb|AE003726.3| Drosophila melanogaster chromosome 3R, section 64 of 118 of the complete
              sequence
          Length = 247876

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 327    ctgaagagcagcagaaaaaa 346
              ||||||||||||||||||||
Sbjct: 153110 ctgaagagcagcagaaaaaa 153129



to top

>gb|AC145949.3| Gallus gallus BAC clone CH261-29A22 from chromosome unknown, complete
             sequence
          Length = 172543

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   catattcagtccagatgcca 203
             ||||||||||||||||||||
Sbjct: 50367 catattcagtccagatgcca 50386



to top

>emb|AL731851.13| Mouse DNA sequence from clone RP23-362N19 on chromosome 2, complete
              sequence
          Length = 207372

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 241    tcctgatgatgtgcctgtgttact 264
              ||||||||||||||||||| ||||
Sbjct: 169267 tcctgatgatgtgcctgtggtact 169244


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,140,316
Number of Sequences: 3902068
Number of extensions: 5140316
Number of successful extensions: 97757
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97585
Number of HSP's gapped (non-prelim): 158
length of query: 519
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 496
effective length of database: 17,143,297,704
effective search space: 8503075661184
effective search space used: 8503075661184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top