Clone Name | baalo17 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_467558.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1454 Score = 363 bits (183), Expect = 4e-97 Identities = 312/355 (87%) Strand = Plus / Plus Query: 1 ggctataaaaggttcctatgtttttgtctgctgccatggaagcagggataaaaggtgtgg 60 ||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| Sbjct: 576 ggctataaaaggttcctatgtttttgtttgctgccatgcaagcagggataagaggtgtgg 635 Query: 61 tgtttgcggtcctgctctgattacaaggttcaaggaagagattgaaggacaaggtcttga 120 ||| || || |||||| |||||| ||||||||||||||||| | | |||||| |||| Sbjct: 636 tgtctgtggacctgctttgattaagaggttcaaggaagagataggtgtacaaggccttgc 695 Query: 121 tggtcaggtggctgttagtgcatgctcacacgttggaggtcacaagtatgcaggaaatgt 180 || ||||||| | || |||||||||||||| || ||||| || ||||||||||||||||| Sbjct: 696 tgatcaggtgtcagtcagtgcatgctcacatgtgggaggccataagtatgcaggaaatgt 755 Query: 181 catcatattcagtccagatgccaagggagaagtgactggtcattggtatggttatgttgc 240 ||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 756 cattgttttcagtgcagatgccaagggagaagtgactggtcattggtatggttatgtttc 815 Query: 241 tcctgatgatgtgcctgtgttactgcgtcaacatattggacaaggagagattgtgggcca 300 |||||||||||||||||| || || | | |||||||||||||||||||||| |||| ||| Sbjct: 816 tcctgatgatgtgcctgtcttgctacataaacatattggacaaggagagatcgtggacca 875 Query: 301 tctgtggaggggccagttgggtttgtctgaagagcagcagaaaaaagctctggag 355 ||| |||||||| ||| |||||||||||||||| |||||| ||||| |||||| Sbjct: 876 tctatggaggggtcagatgggtttgtctgaagaagagcagaggaaagccctggag 930 Score = 67.9 bits (34), Expect = 3e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Plus Query: 438 ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 497 |||||||||||||| |||||||||| ||||||||||||||| ||||| || |||| Sbjct: 1001 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 1057 Query: 498 gctgccaaagtgatctgcca 517 ||||||| |||||||||||| Sbjct: 1058 gctgccagagtgatctgcca 1077
>ref|XM_506948.1| PREDICTED Oryza sativa (japonica cultivar-group), P0685G12.41 mRNA Length = 1611 Score = 363 bits (183), Expect = 4e-97 Identities = 312/355 (87%) Strand = Plus / Plus Query: 1 ggctataaaaggttcctatgtttttgtctgctgccatggaagcagggataaaaggtgtgg 60 ||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| Sbjct: 575 ggctataaaaggttcctatgtttttgtttgctgccatgcaagcagggataagaggtgtgg 634 Query: 61 tgtttgcggtcctgctctgattacaaggttcaaggaagagattgaaggacaaggtcttga 120 ||| || || |||||| |||||| ||||||||||||||||| | | |||||| |||| Sbjct: 635 tgtctgtggacctgctttgattaagaggttcaaggaagagataggtgtacaaggccttgc 694 Query: 121 tggtcaggtggctgttagtgcatgctcacacgttggaggtcacaagtatgcaggaaatgt 180 || ||||||| | || |||||||||||||| || ||||| || ||||||||||||||||| Sbjct: 695 tgatcaggtgtcagtcagtgcatgctcacatgtgggaggccataagtatgcaggaaatgt 754 Query: 181 catcatattcagtccagatgccaagggagaagtgactggtcattggtatggttatgttgc 240 ||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 755 cattgttttcagtgcagatgccaagggagaagtgactggtcattggtatggttatgtttc 814 Query: 241 tcctgatgatgtgcctgtgttactgcgtcaacatattggacaaggagagattgtgggcca 300 |||||||||||||||||| || || | | |||||||||||||||||||||| |||| ||| Sbjct: 815 tcctgatgatgtgcctgtcttgctacataaacatattggacaaggagagatcgtggacca 874 Query: 301 tctgtggaggggccagttgggtttgtctgaagagcagcagaaaaaagctctggag 355 ||| |||||||| ||| |||||||||||||||| |||||| ||||| |||||| Sbjct: 875 tctatggaggggtcagatgggtttgtctgaagaagagcagaggaaagccctggag 929 Score = 67.9 bits (34), Expect = 3e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Plus Query: 438 ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 497 |||||||||||||| |||||||||| ||||||||||||||| ||||| || |||| Sbjct: 1000 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 1056 Query: 498 gctgccaaagtgatctgcca 517 ||||||| |||||||||||| Sbjct: 1057 gctgccagagtgatctgcca 1076
>dbj|AK104276.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-A01, full insert sequence Length = 1454 Score = 363 bits (183), Expect = 4e-97 Identities = 312/355 (87%) Strand = Plus / Plus Query: 1 ggctataaaaggttcctatgtttttgtctgctgccatggaagcagggataaaaggtgtgg 60 ||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| Sbjct: 576 ggctataaaaggttcctatgtttttgtttgctgccatgcaagcagggataagaggtgtgg 635 Query: 61 tgtttgcggtcctgctctgattacaaggttcaaggaagagattgaaggacaaggtcttga 120 ||| || || |||||| |||||| ||||||||||||||||| | | |||||| |||| Sbjct: 636 tgtctgtggacctgctttgattaagaggttcaaggaagagataggtgtacaaggccttgc 695 Query: 121 tggtcaggtggctgttagtgcatgctcacacgttggaggtcacaagtatgcaggaaatgt 180 || ||||||| | || |||||||||||||| || ||||| || ||||||||||||||||| Sbjct: 696 tgatcaggtgtcagtcagtgcatgctcacatgtgggaggccataagtatgcaggaaatgt 755 Query: 181 catcatattcagtccagatgccaagggagaagtgactggtcattggtatggttatgttgc 240 ||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 756 cattgttttcagtgcagatgccaagggagaagtgactggtcattggtatggttatgtttc 815 Query: 241 tcctgatgatgtgcctgtgttactgcgtcaacatattggacaaggagagattgtgggcca 300 |||||||||||||||||| || || | | |||||||||||||||||||||| |||| ||| Sbjct: 816 tcctgatgatgtgcctgtcttgctacataaacatattggacaaggagagatcgtggacca 875 Query: 301 tctgtggaggggccagttgggtttgtctgaagagcagcagaaaaaagctctggag 355 ||| |||||||| ||| |||||||||||||||| |||||| ||||| |||||| Sbjct: 876 tctatggaggggtcagatgggtttgtctgaagaagagcagaggaaagccctggag 930 Score = 67.9 bits (34), Expect = 3e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Plus Query: 438 ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 497 |||||||||||||| |||||||||| ||||||||||||||| ||||| || |||| Sbjct: 1001 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 1057 Query: 498 gctgccaaagtgatctgcca 517 ||||||| |||||||||||| Sbjct: 1058 gctgccagagtgatctgcca 1077
>dbj|AK071759.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109C03, full insert sequence Length = 1611 Score = 363 bits (183), Expect = 4e-97 Identities = 312/355 (87%) Strand = Plus / Plus Query: 1 ggctataaaaggttcctatgtttttgtctgctgccatggaagcagggataaaaggtgtgg 60 ||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| Sbjct: 575 ggctataaaaggttcctatgtttttgtttgctgccatgcaagcagggataagaggtgtgg 634 Query: 61 tgtttgcggtcctgctctgattacaaggttcaaggaagagattgaaggacaaggtcttga 120 ||| || || |||||| |||||| ||||||||||||||||| | | |||||| |||| Sbjct: 635 tgtctgtggacctgctttgattaagaggttcaaggaagagataggtgtacaaggccttgc 694 Query: 121 tggtcaggtggctgttagtgcatgctcacacgttggaggtcacaagtatgcaggaaatgt 180 || ||||||| | || |||||||||||||| || ||||| || ||||||||||||||||| Sbjct: 695 tgatcaggtgtcagtcagtgcatgctcacatgtgggaggccataagtatgcaggaaatgt 754 Query: 181 catcatattcagtccagatgccaagggagaagtgactggtcattggtatggttatgttgc 240 ||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 755 cattgttttcagtgcagatgccaagggagaagtgactggtcattggtatggttatgtttc 814 Query: 241 tcctgatgatgtgcctgtgttactgcgtcaacatattggacaaggagagattgtgggcca 300 |||||||||||||||||| || || | | |||||||||||||||||||||| |||| ||| Sbjct: 815 tcctgatgatgtgcctgtcttgctacataaacatattggacaaggagagatcgtggacca 874 Query: 301 tctgtggaggggccagttgggtttgtctgaagagcagcagaaaaaagctctggag 355 ||| |||||||| ||| |||||||||||||||| |||||| ||||| |||||| Sbjct: 875 tctatggaggggtcagatgggtttgtctgaagaagagcagaggaaagccctggag 929 Score = 67.9 bits (34), Expect = 3e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Plus Query: 438 ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 497 |||||||||||||| |||||||||| ||||||||||||||| ||||| || |||| Sbjct: 1000 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 1056 Query: 498 gctgccaaagtgatctgcca 517 ||||||| |||||||||||| Sbjct: 1057 gctgccagagtgatctgcca 1076
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 238 bits (120), Expect = 1e-59 Identities = 201/228 (88%) Strand = Plus / Minus Query: 1 ggctataaaaggttcctatgtttttgtctgctgccatggaagcagggataaaaggtgtgg 60 ||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| Sbjct: 30160339 ggctataaaaggttcctatgtttttgtttgctgccatgcaagcagggataagaggtgtgg 30160280 Query: 61 tgtttgcggtcctgctctgattacaaggttcaaggaagagattgaaggacaaggtcttga 120 ||| || || |||||| |||||| ||||||||||||||||| | | |||||| |||| Sbjct: 30160279 tgtctgtggacctgctttgattaagaggttcaaggaagagataggtgtacaaggccttgc 30160220 Query: 121 tggtcaggtggctgttagtgcatgctcacacgttggaggtcacaagtatgcaggaaatgt 180 || ||||||| | || |||||||||||||| || ||||| || ||||||||||||||||| Sbjct: 30160219 tgatcaggtgtcagtcagtgcatgctcacatgtgggaggccataagtatgcaggaaatgt 30160160 Query: 181 catcatattcagtccagatgccaagggagaagtgactggtcattggta 228 ||| | |||||| |||||||||||||||||||||||||||||||||| Sbjct: 30160159 cattgttttcagtgcagatgccaagggagaagtgactggtcattggta 30160112 Score = 99.6 bits (50), Expect = 9e-18 Identities = 77/86 (89%) Strand = Plus / Minus Query: 225 ggtatggttatgttgctcctgatgatgtgcctgtgttactgcgtcaacatattggacaag 284 |||||||||||||| ||||||||||||||||||| || || | | ||||||||||||||| Sbjct: 30159995 ggtatggttatgtttctcctgatgatgtgcctgtcttgctacataaacatattggacaag 30159936 Query: 285 gagagattgtgggccatctgtggagg 310 ||||||| |||| |||||| |||||| Sbjct: 30159935 gagagatcgtggaccatctatggagg 30159910 Score = 67.9 bits (34), Expect = 3e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Minus Query: 438 ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 497 |||||||||||||| |||||||||| ||||||||||||||| ||||| || |||| Sbjct: 30158857 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 30158801 Query: 498 gctgccaaagtgatctgcca 517 ||||||| |||||||||||| Sbjct: 30158800 gctgccagagtgatctgcca 30158781 Score = 40.1 bits (20), Expect = 7.0 Identities = 41/48 (85%) Strand = Plus / Minus Query: 308 aggggccagttgggtttgtctgaagagcagcagaaaaaagctctggag 355 ||||| ||| |||||||||||||||| |||||| ||||| |||||| Sbjct: 30158975 aggggtcagatgggtttgtctgaagaagagcagaggaaagccctggag 30158928
>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0685G12 Length = 149155 Score = 238 bits (120), Expect = 1e-59 Identities = 201/228 (88%) Strand = Plus / Minus Query: 1 ggctataaaaggttcctatgtttttgtctgctgccatggaagcagggataaaaggtgtgg 60 ||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| Sbjct: 139936 ggctataaaaggttcctatgtttttgtttgctgccatgcaagcagggataagaggtgtgg 139877 Query: 61 tgtttgcggtcctgctctgattacaaggttcaaggaagagattgaaggacaaggtcttga 120 ||| || || |||||| |||||| ||||||||||||||||| | | |||||| |||| Sbjct: 139876 tgtctgtggacctgctttgattaagaggttcaaggaagagataggtgtacaaggccttgc 139817 Query: 121 tggtcaggtggctgttagtgcatgctcacacgttggaggtcacaagtatgcaggaaatgt 180 || ||||||| | || |||||||||||||| || ||||| || ||||||||||||||||| Sbjct: 139816 tgatcaggtgtcagtcagtgcatgctcacatgtgggaggccataagtatgcaggaaatgt 139757 Query: 181 catcatattcagtccagatgccaagggagaagtgactggtcattggta 228 ||| | |||||| |||||||||||||||||||||||||||||||||| Sbjct: 139756 cattgttttcagtgcagatgccaagggagaagtgactggtcattggta 139709 Score = 99.6 bits (50), Expect = 9e-18 Identities = 77/86 (89%) Strand = Plus / Minus Query: 225 ggtatggttatgttgctcctgatgatgtgcctgtgttactgcgtcaacatattggacaag 284 |||||||||||||| ||||||||||||||||||| || || | | ||||||||||||||| Sbjct: 139592 ggtatggttatgtttctcctgatgatgtgcctgtcttgctacataaacatattggacaag 139533 Query: 285 gagagattgtgggccatctgtggagg 310 ||||||| |||| |||||| |||||| Sbjct: 139532 gagagatcgtggaccatctatggagg 139507 Score = 67.9 bits (34), Expect = 3e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Minus Query: 438 ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 497 |||||||||||||| |||||||||| ||||||||||||||| ||||| || |||| Sbjct: 138454 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 138398 Query: 498 gctgccaaagtgatctgcca 517 ||||||| |||||||||||| Sbjct: 138397 gctgccagagtgatctgcca 138378 Score = 40.1 bits (20), Expect = 7.0 Identities = 41/48 (85%) Strand = Plus / Minus Query: 308 aggggccagttgggtttgtctgaagagcagcagaaaaaagctctggag 355 ||||| ||| |||||||||||||||| |||||| ||||| |||||| Sbjct: 138572 aggggtcagatgggtttgtctgaagaagagcagaggaaagccctggag 138525
>dbj|AP004179.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_G07 Length = 93240 Score = 238 bits (120), Expect = 1e-59 Identities = 201/228 (88%) Strand = Plus / Minus Query: 1 ggctataaaaggttcctatgtttttgtctgctgccatggaagcagggataaaaggtgtgg 60 ||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| Sbjct: 33043 ggctataaaaggttcctatgtttttgtttgctgccatgcaagcagggataagaggtgtgg 32984 Query: 61 tgtttgcggtcctgctctgattacaaggttcaaggaagagattgaaggacaaggtcttga 120 ||| || || |||||| |||||| ||||||||||||||||| | | |||||| |||| Sbjct: 32983 tgtctgtggacctgctttgattaagaggttcaaggaagagataggtgtacaaggccttgc 32924 Query: 121 tggtcaggtggctgttagtgcatgctcacacgttggaggtcacaagtatgcaggaaatgt 180 || ||||||| | || |||||||||||||| || ||||| || ||||||||||||||||| Sbjct: 32923 tgatcaggtgtcagtcagtgcatgctcacatgtgggaggccataagtatgcaggaaatgt 32864 Query: 181 catcatattcagtccagatgccaagggagaagtgactggtcattggta 228 ||| | |||||| |||||||||||||||||||||||||||||||||| Sbjct: 32863 cattgttttcagtgcagatgccaagggagaagtgactggtcattggta 32816 Score = 99.6 bits (50), Expect = 9e-18 Identities = 77/86 (89%) Strand = Plus / Minus Query: 225 ggtatggttatgttgctcctgatgatgtgcctgtgttactgcgtcaacatattggacaag 284 |||||||||||||| ||||||||||||||||||| || || | | ||||||||||||||| Sbjct: 32699 ggtatggttatgtttctcctgatgatgtgcctgtcttgctacataaacatattggacaag 32640 Query: 285 gagagattgtgggccatctgtggagg 310 ||||||| |||| |||||| |||||| Sbjct: 32639 gagagatcgtggaccatctatggagg 32614 Score = 67.9 bits (34), Expect = 3e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Minus Query: 438 ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 497 |||||||||||||| |||||||||| ||||||||||||||| ||||| || |||| Sbjct: 31561 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 31505 Query: 498 gctgccaaagtgatctgcca 517 ||||||| |||||||||||| Sbjct: 31504 gctgccagagtgatctgcca 31485 Score = 40.1 bits (20), Expect = 7.0 Identities = 41/48 (85%) Strand = Plus / Minus Query: 308 aggggccagttgggtttgtctgaagagcagcagaaaaaagctctggag 355 ||||| ||| |||||||||||||||| |||||| ||||| |||||| Sbjct: 31679 aggggtcagatgggtttgtctgaagaagagcagaggaaagccctggag 31632
>emb|CR962136.2| Medicago truncatula chromosome 5 clone mth2-52n22, COMPLETE SEQUENCE Length = 87738 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 141 catgctcacacgttggaggtcacaagtatgcaggaaatgtcatcatatt 189 ||||||| ||| |||| || || |||||||||||||||||||| ||||| Sbjct: 27902 catgctcgcacattgggggacataagtatgcaggaaatgtcattatatt 27854
>ref|NM_113673.3| Arabidopsis thaliana unknown protein AT3G27570 mRNA, complete cds Length = 1475 Score = 44.1 bits (22), Expect = 0.45 Identities = 37/42 (88%) Strand = Plus / Plus Query: 216 ctggtcattggtatggttatgttgctcctgatgatgtgcctg 257 |||| ||||||||||| ||||| |||||||||| ||||||| Sbjct: 786 ctggccattggtatggctatgtgactcctgatgacgtgcctg 827
>gb|AY090299.1| Arabidopsis thaliana AT3g27570/MMJ24_12 mRNA, complete cds Length = 1023 Score = 44.1 bits (22), Expect = 0.45 Identities = 37/42 (88%) Strand = Plus / Plus Query: 216 ctggtcattggtatggttatgttgctcctgatgatgtgcctg 257 |||| ||||||||||| ||||| |||||||||| ||||||| Sbjct: 614 ctggccattggtatggctatgtgactcctgatgacgtgcctg 655
>gb|AY058067.1| Arabidopsis thaliana AT3g27570/MMJ24_12 mRNA, complete cds Length = 1329 Score = 44.1 bits (22), Expect = 0.45 Identities = 37/42 (88%) Strand = Plus / Plus Query: 216 ctggtcattggtatggttatgttgctcctgatgatgtgcctg 257 |||| ||||||||||| ||||| |||||||||| ||||||| Sbjct: 699 ctggccattggtatggctatgtgactcctgatgacgtgcctg 740
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 429 acggtgctgctgcttgcaaccc 450 |||||||||||||||||||||| Sbjct: 20715803 acggtgctgctgcttgcaaccc 20715824
>emb|BX823003.1|CNS0A76F Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB7ZE10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1312 Score = 44.1 bits (22), Expect = 0.45 Identities = 37/42 (88%) Strand = Plus / Plus Query: 216 ctggtcattggtatggttatgttgctcctgatgatgtgcctg 257 |||| ||||||||||| ||||| |||||||||| ||||||| Sbjct: 710 ctggccattggtatggctatgtgactcctgatgacgtgcctg 751
>emb|BX824053.1|CNS0A6WO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH19ZA08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1373 Score = 44.1 bits (22), Expect = 0.45 Identities = 37/42 (88%) Strand = Plus / Plus Query: 216 ctggtcattggtatggttatgttgctcctgatgatgtgcctg 257 |||| ||||||||||| ||||| |||||||||| ||||||| Sbjct: 787 ctggccattggtatggctatgtgactcctgatgacgtgcctg 828
>gb|AY089161.1| Arabidopsis thaliana clone 40179 mRNA, complete sequence Length = 1355 Score = 44.1 bits (22), Expect = 0.45 Identities = 37/42 (88%) Strand = Plus / Plus Query: 216 ctggtcattggtatggttatgttgctcctgatgatgtgcctg 257 |||| ||||||||||| ||||| |||||||||| ||||||| Sbjct: 710 ctggccattggtatggctatgtgactcctgatgacgtgcctg 751
>dbj|AP004617.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0479C08 Length = 152460 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 429 acggtgctgctgcttgcaaccc 450 |||||||||||||||||||||| Sbjct: 88256 acggtgctgctgcttgcaaccc 88277
>emb|AL672284.15| Mouse DNA sequence from clone RP23-39I7 on chromosome X, complete sequence Length = 227918 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 398 gccaaagaatcccctgaagcaa 419 |||||||||||||||||||||| Sbjct: 65835 gccaaagaatcccctgaagcaa 65856
>ref|XM_641697.1| Dictyostelium discoideum hypothetical protein (DDB0191047), partial mRNA Length = 966 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 224 tggtatggttatgttgctcctgatgatgt 252 |||||||||||||| ||||||||||||| Sbjct: 838 tggtatggttatgtaactcctgatgatgt 866
>gb|AE006681.1| Sulfolobus solfataricus P2 section 40 of 272 of the complete genome Length = 13348 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 79 gattacaaggttcaaggaagagatt 103 ||||||||| ||||||||||||||| Sbjct: 7879 gattacaagattcaaggaagagatt 7903
>gb|AC100738.8| Mus musculus chromosome 15, clone RP24-362K21, complete sequence Length = 128950 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 409 ccctgaagcaaatggaaccaa 429 ||||||||||||||||||||| Sbjct: 86353 ccctgaagcaaatggaaccaa 86333
>gb|AE014133.1| Streptococcus mutans UA159, complete genome Length = 2030921 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 ctgtgttactgcgtcaacata 275 ||||||||||||||||||||| Sbjct: 1592834 ctgtgttactgcgtcaacata 1592854
>gb|BC109352.1| Mus musculus RIKEN cDNA 1190002A17 gene, mRNA (cDNA clone MGC:130365 IMAGE:40057006), complete cds Length = 1545 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 241 tcctgatgatgtgcctgtgttact 264 ||||||||||||||||||| |||| Sbjct: 702 tcctgatgatgtgcctgtggtact 679
>ref|NM_014485.2| Homo sapiens prostaglandin D2 synthase, hematopoietic (PGDS), mRNA Length = 1615 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 agaagtgactggtcattggt 227 |||||||||||||||||||| Sbjct: 1141 agaagtgactggtcattggt 1122
>gb|BC100481.1| Mus musculus RIKEN cDNA 1190002A17 gene, mRNA (cDNA clone MGC:118311 IMAGE:30917849), complete cds Length = 1589 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 241 tcctgatgatgtgcctgtgttact 264 ||||||||||||||||||| |||| Sbjct: 712 tcctgatgatgtgcctgtggtact 689
>ref|XM_959349.1| Neurospora crassa OR74A hypothetical protein (NCU09740.1) partial mRNA Length = 8457 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 241 tcctgatgatgtgcctgtgttact 264 ||||||| |||||||||||||||| Sbjct: 5673 tcctgataatgtgcctgtgttact 5696
>ref|XM_330389.1| Neurospora crassa OR74A hypothetical protein (NCU09740.1) partial mRNA Length = 8457 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 241 tcctgatgatgtgcctgtgttact 264 ||||||| |||||||||||||||| Sbjct: 5673 tcctgataatgtgcctgtgttact 5696
>ref|NM_001033874.1| Mus musculus RIKEN cDNA 1190002A17 gene (1190002A17Rik), mRNA Length = 1589 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 241 tcctgatgatgtgcctgtgttact 264 ||||||||||||||||||| |||| Sbjct: 712 tcctgatgatgtgcctgtggtact 689
>gb|AC146106.3| Pan troglodytes BAC clone RP43-5I17 from 7, complete sequence Length = 221821 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tgtttttgtctgctgccatg 38 |||||||||||||||||||| Sbjct: 111715 tgtttttgtctgctgccatg 111696
>gb|AC092676.2| Homo sapiens BAC clone RP11-641E23 from 7, complete sequence Length = 118035 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tgtttttgtctgctgccatg 38 |||||||||||||||||||| Sbjct: 41790 tgtttttgtctgctgccatg 41771
>gb|AC107482.2| Homo sapiens 3p BAC RP11-271J8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180631 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 tgatggtcaggtggctgtta 137 |||||||||||||||||||| Sbjct: 37012 tgatggtcaggtggctgtta 37031
>gb|AC146329.19| Medicago truncatula clone mth2-5i21, complete sequence Length = 142834 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 aacctgctgccaaagtgatc 512 |||||||||||||||||||| Sbjct: 59184 aacctgctgccaaagtgatc 59203
>emb|AL662874.9| Human DNA sequence from clone RP13-24G8 on chromosome X Contains a novel gene, a delta sleep inducing peptide, immunoreactor (DSIPI) pseudogene, the PABPC5 gene for poly(A) binding protein, cytoplasmic 5 and a CpG island, complete sequence Length = 160906 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 acaaggagagattgtgggcc 299 |||||||||||||||||||| Sbjct: 96053 acaaggagagattgtgggcc 96034
>emb|AL390719.47| Human DNA sequence from clone RP11-465B22 on chromosome 1 Contains a novel gene, a novel gene, a protein tyrosine phosphatase family pseudogene, a novel gene (FLJ20584), a novel gene, a novel gene, a novel gene (FLJ36119) and five CpG islands, complete sequence Length = 130979 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 tgatggtcaggtggctgtta 137 |||||||||||||||||||| Sbjct: 51210 tgatggtcaggtggctgtta 51229
>emb|AL390959.12| Human DNA sequence from clone RP1-44L3 on chromosome 6 Contains a CpG island, complete sequence Length = 105239 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 tgatggtcaggtggctgtta 137 |||||||||||||||||||| Sbjct: 81760 tgatggtcaggtggctgtta 81741
>emb|BX569693.1| Synechococcus sp. WH8102 complete genome; segment 5/7 Length = 349213 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 379 aactgaggaagaatcaagcgccaa 402 ||||||||||||||||| |||||| Sbjct: 103289 aactgaggaagaatcaatcgccaa 103312
>emb|BX571953.9| Zebrafish DNA sequence from clone RP71-69B23 in linkage group 13, complete sequence Length = 144282 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gtctgaagagcagcagaaaa 344 |||||||||||||||||||| Sbjct: 94160 gtctgaagagcagcagaaaa 94179
>emb|CR622166.1| full-length cDNA clone CS0DI056YL24 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1581 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 agaagtgactggtcattggt 227 |||||||||||||||||||| Sbjct: 1086 agaagtgactggtcattggt 1067
>emb|CR619711.1| full-length cDNA clone CS0DI049YN24 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1586 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 agaagtgactggtcattggt 227 |||||||||||||||||||| Sbjct: 1112 agaagtgactggtcattggt 1093
>gb|AC182634.3| Gallus gallus BAC clone CH261-141O9 from chromosome 1, complete sequence Length = 187635 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 catattcagtccagatgcca 203 |||||||||||||||||||| Sbjct: 50551 catattcagtccagatgcca 50570
>gb|AC108142.3| Homo sapiens BAC clone RP11-402C9 from 4, complete sequence Length = 62624 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cagtccagatgccaagggag 209 |||||||||||||||||||| Sbjct: 31091 cagtccagatgccaagggag 31072
>gb|AC096746.3| Homo sapiens BAC clone RP11-363G15 from 4, complete sequence Length = 158944 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 agaagtgactggtcattggt 227 |||||||||||||||||||| Sbjct: 142155 agaagtgactggtcattggt 142174
>gb|AC106821.2| Homo sapiens chromosome 5 clone RP11-730N24, complete sequence Length = 151355 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 gagattgtgggccatctgtg 306 |||||||||||||||||||| Sbjct: 85902 gagattgtgggccatctgtg 85883
>dbj|AK004439.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1190002A17 product:hypothetical Adenylate kinase containing protein, full insert sequence Length = 1559 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 241 tcctgatgatgtgcctgtgttact 264 ||||||||||||||||||| |||| Sbjct: 713 tcctgatgatgtgcctgtggtact 690
>gb|AC008192.8|AC008192 Drosophila melanogaster, chromosome 3R, region 92A-92A, BAC clone BACR12P10, complete sequence Length = 186686 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 ctgaagagcagcagaaaaaa 346 |||||||||||||||||||| Sbjct: 94951 ctgaagagcagcagaaaaaa 94970
>gb|AC152506.2| Pan troglodytes BAC clone RP43-4B9 from chromosome 7, complete sequence Length = 181146 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tgtttttgtctgctgccatg 38 |||||||||||||||||||| Sbjct: 74719 tgtttttgtctgctgccatg 74700
>gb|AC019086.7| Homo sapiens BAC clone RP11-360H4 from 2, complete sequence Length = 199934 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 tgatggtcaggtggctgtta 137 |||||||||||||||||||| Sbjct: 12897 tgatggtcaggtggctgtta 12878
>gb|AC010142.4|AC010142 Homo sapiens BAC clone RP11-240N18 from Y, complete sequence Length = 136462 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 acaaggagagattgtgggcc 299 |||||||||||||||||||| Sbjct: 72341 acaaggagagattgtgggcc 72322
>gb|AY989819.1| Fragaria x ananassa beta-1,3-glucanase (BG2-3) mRNA, complete cds Length = 1271 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 aaggttcctatgtttttgtc 28 |||||||||||||||||||| Sbjct: 1193 aaggttcctatgtttttgtc 1212
>gb|AC151053.2| Mus musculus BAC clone RP23-402A4 from 7, complete sequence Length = 201862 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 gccatctgtggaggggccag 316 |||||||||||||||||||| Sbjct: 47526 gccatctgtggaggggccag 47507
>gb|AE003726.3| Drosophila melanogaster chromosome 3R, section 64 of 118 of the complete sequence Length = 247876 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 ctgaagagcagcagaaaaaa 346 |||||||||||||||||||| Sbjct: 153110 ctgaagagcagcagaaaaaa 153129
>gb|AC145949.3| Gallus gallus BAC clone CH261-29A22 from chromosome unknown, complete sequence Length = 172543 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 catattcagtccagatgcca 203 |||||||||||||||||||| Sbjct: 50367 catattcagtccagatgcca 50386
>emb|AL731851.13| Mouse DNA sequence from clone RP23-362N19 on chromosome 2, complete sequence Length = 207372 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 241 tcctgatgatgtgcctgtgttact 264 ||||||||||||||||||| |||| Sbjct: 169267 tcctgatgatgtgcctgtggtact 169244 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,140,316 Number of Sequences: 3902068 Number of extensions: 5140316 Number of successful extensions: 97757 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97585 Number of HSP's gapped (non-prelim): 158 length of query: 519 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 496 effective length of database: 17,143,297,704 effective search space: 8503075661184 effective search space used: 8503075661184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)