ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baalo16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MT21_ORYSA (P94029) Metallothionein-like protein type 2 36 0.073
2PIGT_MOUSE (Q8BXQ2) GPI transamidase component PIG-T precursor (... 30 4.0
3SOX14_DROME (P40656) Putative transcription factor SOX-14 30 6.8

>MT21_ORYSA (P94029) Metallothionein-like protein type 2|
          Length = 82

 Score = 36.2 bits (82), Expect = 0.073
 Identities = 20/38 (52%), Positives = 24/38 (63%)
 Frame = +3

Query: 72  MYPGMDEGVSTTATSSQALVMGVASSKGNGPSFEAAAA 185
           MYP M E V+TT    Q ++MGVA SKG+    EA AA
Sbjct: 25  MYPEMAEEVTTT----QTVIMGVAPSKGHAEGLEAGAA 58



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>PIGT_MOUSE (Q8BXQ2) GPI transamidase component PIG-T precursor|
           (Phosphatidylinositol-glycan biosynthesis, class T
           protein) (Neuronal development-associated protein 7)
          Length = 582

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 556 LHTQEYIYVDKTGKAHEDGTKAVGEAHDNTTQNTVQATRGTY 431
           L +Q  +YVD TG + ++ T  V     +T Q+ +  TR TY
Sbjct: 278 LASQSLVYVDITGYSQDNETLEVSPPPTSTYQDVILGTRKTY 319



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>SOX14_DROME (P40656) Putative transcription factor SOX-14|
          Length = 472

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = -3

Query: 271 PSPCVDSTDHLQVHGLQVQLGPHLHPPFSAAAASNEGPLPLEDATPMTRAWEEVAVVLTP 92
           P+P  DST             PH  PPFS + +    P P    TP  +  +  A +  P
Sbjct: 42  PAPKADST-------------PHTLPPFSPSPSPASSPSPAPAQTPGAQKTQSQAAITHP 88

Query: 91  SSI 83
           +++
Sbjct: 89  AAV 91


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,851,789
Number of Sequences: 219361
Number of extensions: 1257292
Number of successful extensions: 3683
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3682
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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