>PUM_DROME (P25822) Maternal protein pumilio|
          Length = 1533

 Score = 89.7 bits (221), Expect(2) = 2e-29
 Identities = 43/67 (64%), Positives = 52/67 (77%)
 Frame = +1

Query: 406  ALPKRRRPVFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQM 585
            A    ++ VF+E+L  A SLMTDVFGNYVIQKFFE GTPEQ+  L  ++ GHV+ L+LQM
Sbjct: 1136 ATAAEKQMVFSEILAAAYSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQM 1195

Query: 586  YGCRVIQ 606
            YGCRVIQ
Sbjct: 1196 YGCRVIQ 1202



 Score = 58.9 bits (141), Expect(2) = 2e-29
 Identities = 36/105 (34%), Positives = 49/105 (46%)
 Frame = +3

Query: 108  PLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSGFQGQREREKFDSPKACTFL 287
            PL  P +        +  + + R   A    A+    A  G  G  +      P     L
Sbjct: 1043 PLAIPGTAAVAAAAAAAAAANSRQVAATAAAAAAVAAAAGGVGGAPQ------PGRSRLL 1096

Query: 288  EELKSNRARRVELSDITGRIVDFSADQHGSRFIQQKLENCTAEEK 422
            E+ ++ R   ++L D+   IV+FS DQHGSRFIQQKLE  TA EK
Sbjct: 1097 EDFRNQRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEK 1141



 Score = 44.7 bits (104), Expect(2) = 3e-07
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = +1

Query: 427  PVFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
            P+  E+  H   L+ D +GNYVIQ   EHG  E +  L   + G V+ LS   +   V++
Sbjct: 1287 PILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVE 1346



 Score = 34.7 bits (78), Expect = 0.22
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 463  LMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYG 591
            +M D + NYV+QK  +   P Q + L  K+  H+  L    YG
Sbjct: 1375 MMKDQYANYVVQKMIDVSEPTQLKKLMTKIRPHMAALRKYTYG 1417



 Score = 33.5 bits (75), Expect = 0.49
 Identities = 20/49 (40%), Positives = 24/49 (48%)
 Frame = +1

Query: 460  SLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
            SL T  +G  VIQ+  EH T EQ   +  +L  H   L    YG  VIQ
Sbjct: 1262 SLSTHPYGCRVIQRILEHCTAEQTTPILDELHEHTEQLIQDQYGNYVIQ 1310



 Score = 29.3 bits (64), Expect(2) = 3e-07
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 339  GRIVDFSADQHGSRFIQQKLENCTAEE 419
            G++   S   +G R IQ+ LE+CTAE+
Sbjct: 1258 GQVYSLSTHPYGCRVIQRILEHCTAEQ 1284

>PUM2_HUMAN (Q8TB72) Pumilio homolog 2 (Pumilio-2)|
          Length = 1066

 Score = 89.4 bits (220), Expect(2) = 8e-29
 Identities = 43/67 (64%), Positives = 52/67 (77%)
 Frame = +1

Query: 406 ALPKRRRPVFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQM 585
           A P  R+ VF E+L  A  LMTDVFGNYVIQKFFE G+ +Q+  LA ++ GHV+PL+LQM
Sbjct: 751 ATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQM 810

Query: 586 YGCRVIQ 606
           YGCRVIQ
Sbjct: 811 YGCRVIQ 817



 Score = 57.4 bits (137), Expect(2) = 8e-29
 Identities = 26/46 (56%), Positives = 34/46 (73%)
 Frame = +3

Query: 285 LEELKSNRARRVELSDITGRIVDFSADQHGSRFIQQKLENCTAEEK 422
           LE+ ++NR   ++L D+ G IV+FS DQHGSRFIQQKLE  T  E+
Sbjct: 711 LEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAER 756



 Score = 50.8 bits (120), Expect(2) = 9e-09
 Identities = 21/60 (35%), Positives = 34/60 (56%)
 Frame = +1

Query: 427  PVFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
            P+  E+  H   L+ D +GNYVIQ   EHG PE +  + +++ G V+ LS   +   V++
Sbjct: 904  PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVE 963



 Score = 38.9 bits (89), Expect = 0.012
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +1

Query: 448  PHAS--SLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVI 603
            PH++  ++M D + NYV+QK  +   P QR+ +  K+  H+  L    YG  ++
Sbjct: 988  PHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHIL 1041



 Score = 38.1 bits (87), Expect = 0.020
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = +1

Query: 451 HASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
           H    + D  GN+V+QK  E   P+  + +     G V  LS   YGCRVIQ
Sbjct: 840 HVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQ 891



 Score = 32.0 bits (71), Expect = 1.4
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = +1

Query: 463  LMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
            L T  +G  VIQ+  EH T EQ   +  +L  H   L    YG  VIQ
Sbjct: 880  LSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQ 927



 Score = 28.1 bits (61), Expect(2) = 9e-09
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 339 GRIVDFSADQHGSRFIQQKLENCTAEE 419
           G++   S   +G R IQ+ LE+CTAE+
Sbjct: 875 GQVFVLSTHPYGCRVIQRILEHCTAEQ 901

>PUM2_MOUSE (Q80U58) Pumilio homolog 2|
          Length = 1066

 Score = 89.0 bits (219), Expect(2) = 1e-28
 Identities = 43/67 (64%), Positives = 52/67 (77%)
 Frame = +1

Query: 406 ALPKRRRPVFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQM 585
           A P  R+ VF E+L  A  LMTDVFGNYVIQKFFE G+ +Q+  LA ++ GHV+PL+LQM
Sbjct: 751 ATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQM 810

Query: 586 YGCRVIQ 606
           YGCRVIQ
Sbjct: 811 YGCRVIQ 817



 Score = 57.4 bits (137), Expect(2) = 1e-28
 Identities = 26/46 (56%), Positives = 34/46 (73%)
 Frame = +3

Query: 285 LEELKSNRARRVELSDITGRIVDFSADQHGSRFIQQKLENCTAEEK 422
           LE+ ++NR   ++L D+ G IV+FS DQHGSRFIQQKLE  T  E+
Sbjct: 711 LEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAER 756



 Score = 50.8 bits (120), Expect(2) = 9e-09
 Identities = 21/60 (35%), Positives = 34/60 (56%)
 Frame = +1

Query: 427  PVFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
            P+  E+  H   L+ D +GNYVIQ   EHG PE +  + +++ G V+ LS   +   V++
Sbjct: 904  PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVE 963



 Score = 38.9 bits (89), Expect = 0.012
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +1

Query: 448  PHAS--SLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVI 603
            PH++  ++M D + NYV+QK  +   P QR+ +  K+  H+  L    YG  ++
Sbjct: 988  PHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHIL 1041



 Score = 38.1 bits (87), Expect = 0.020
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = +1

Query: 451 HASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
           H    + D  GN+V+QK  E   P+  + +     G V  LS   YGCRVIQ
Sbjct: 840 HVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQ 891



 Score = 32.0 bits (71), Expect = 1.4
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = +1

Query: 463  LMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
            L T  +G  VIQ+  EH T EQ   +  +L  H   L    YG  VIQ
Sbjct: 880  LSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQ 927



 Score = 28.1 bits (61), Expect(2) = 9e-09
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 339 GRIVDFSADQHGSRFIQQKLENCTAEE 419
           G++   S   +G R IQ+ LE+CTAE+
Sbjct: 875 GQVFVLSTHPYGCRVIQRILEHCTAEQ 901

>PUM1_HUMAN (Q14671) Pumilio homolog 1 (Pumilio-1) (HsPUM)|
          Length = 1186

 Score = 84.7 bits (208), Expect(2) = 4e-26
 Identities = 42/67 (62%), Positives = 50/67 (74%)
 Frame = +1

Query: 406  ALPKRRRPVFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQM 585
            A P  R+ VF E+L  A  LM DVFGNYVIQKFFE G+ EQ+  LA ++ GHV+ L+LQM
Sbjct: 873  ATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQM 932

Query: 586  YGCRVIQ 606
            YGCRVIQ
Sbjct: 933  YGCRVIQ 939



 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 24/66 (36%), Positives = 38/66 (57%)
 Frame = +1

Query: 409  LPKRRRPVFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMY 588
            LP +  P+  E+  H   L+ D +GNYVIQ   EHG PE +  + A++ G+V+ LS   +
Sbjct: 1018 LPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKF 1077

Query: 589  GCRVIQ 606
               V++
Sbjct: 1078 ASNVVE 1083



 Score = 53.1 bits (126), Expect(2) = 4e-26
 Identities = 24/46 (52%), Positives = 33/46 (71%)
 Frame = +3

Query: 285 LEELKSNRARRVELSDITGRIVDFSADQHGSRFIQQKLENCTAEEK 422
           LE+ ++NR   ++L +I G I++FS DQHGSRFIQ KLE  T  E+
Sbjct: 833 LEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAER 878



 Score = 38.5 bits (88), Expect = 0.015
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = +1

Query: 451  HASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
            H    + D  GN+V+QK  E   P+  + +     G V  LS   YGCRVIQ
Sbjct: 960  HVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQ 1011



 Score = 37.7 bits (86), Expect(2) = 0.004
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +1

Query: 448  PHAS--SLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVI 603
            PH++  ++M D + NYV+QK  +   P QR+ +  K+  H+  L    YG  ++
Sbjct: 1108 PHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 1161



 Score = 32.0 bits (71), Expect = 1.4
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +1

Query: 460  SLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
            +L T  +G  VIQ+  EH  P+Q   +  +L  H   L    YG  VIQ
Sbjct: 999  ALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQ 1047



 Score = 21.6 bits (44), Expect(2) = 0.004
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 321  ELSDITGRIVDFSADQHGSRFIQQKLENCTAEEKAARVCRSSSSCFIFN 467
            EL   T ++V    DQ+G+  IQ  LE+   E+K+  V     +  + +
Sbjct: 1028 ELHQHTEQLVQ---DQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLS 1073

>PUM1_MOUSE (Q80U78) Pumilio homolog 1|
          Length = 1189

 Score = 82.0 bits (201), Expect(2) = 6e-26
 Identities = 41/67 (61%), Positives = 49/67 (73%)
 Frame = +1

Query: 406  ALPKRRRPVFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQM 585
            A    R+ VF E+L  A  LM DVFGNYVIQKFFE G+ EQ+  LA ++ GHV+ L+LQM
Sbjct: 874  ATAAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQM 933

Query: 586  YGCRVIQ 606
            YGCRVIQ
Sbjct: 934  YGCRVIQ 940



 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 24/66 (36%), Positives = 38/66 (57%)
 Frame = +1

Query: 409  LPKRRRPVFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMY 588
            LP +  P+  E+  H   L+ D +GNYVIQ   EHG PE +  + A++ G+V+ LS   +
Sbjct: 1021 LPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKF 1080

Query: 589  GCRVIQ 606
               V++
Sbjct: 1081 ASNVVE 1086



 Score = 55.1 bits (131), Expect(2) = 6e-26
 Identities = 25/46 (54%), Positives = 34/46 (73%)
 Frame = +3

Query: 285 LEELKSNRARRVELSDITGRIVDFSADQHGSRFIQQKLENCTAEEK 422
           LE+ ++NR   ++L +I G I++FS DQHGSRFIQ KLE  TA E+
Sbjct: 834 LEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAER 879



 Score = 38.5 bits (88), Expect = 0.015
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = +1

Query: 451  HASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
            H    + D  GN+V+QK  E   P+  + +     G V  LS   YGCRVIQ
Sbjct: 963  HVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQ 1014



 Score = 37.7 bits (86), Expect(2) = 0.004
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +1

Query: 448  PHAS--SLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVI 603
            PH++  ++M D + NYV+QK  +   P QR+ +  K+  H+  L    YG  ++
Sbjct: 1111 PHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 1164



 Score = 32.0 bits (71), Expect = 1.4
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +1

Query: 460  SLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
            +L T  +G  VIQ+  EH  P+Q   +  +L  H   L    YG  VIQ
Sbjct: 1002 ALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQ 1050



 Score = 21.6 bits (44), Expect(2) = 0.004
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 321  ELSDITGRIVDFSADQHGSRFIQQKLENCTAEEKAARVCRSSSSCFIFN 467
            EL   T ++V    DQ+G+  IQ  LE+   E+K+  V     +  + +
Sbjct: 1031 ELHQHTEQLVQ---DQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLS 1076

>PUF3_YEAST (Q07807) Protein PUF3|
          Length = 879

 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 34/72 (47%), Positives = 43/72 (59%)
 Frame = +1

Query: 391 RSWKTALPKRRRPVFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVP 570
           R   T+    +  +F E+   A  L  DVFGNYVIQKFFE G+  Q+  L  +  G++  
Sbjct: 558 RELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQ 617

Query: 571 LSLQMYGCRVIQ 606
           LSLQMY CRVIQ
Sbjct: 618 LSLQMYACRVIQ 629



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 23/63 (36%), Positives = 33/63 (52%)
 Frame = +1

Query: 418 RRRPVFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCR 597
           +R  +  E+      ++ D  GN+VIQK  E    E+   + + L GH+  LS   YGCR
Sbjct: 639 QRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCR 698

Query: 598 VIQ 606
           VIQ
Sbjct: 699 VIQ 701



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
 Frame = +3

Query: 285 LEELKS-----NRARRVELSDITGRIVDFSADQHGSRFIQQKLENCTAEEK 422
           LE+L++     N    + L DI G  ++F  DQHGSRFIQ++L    A EK
Sbjct: 518 LEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEK 568



 Score = 30.4 bits (67), Expect = 4.2
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 409 LPKRRRP-VFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQM 585
           +P  + P + + +  H   L T  +G  VIQ+  E G+ E +  +  +L   +  L    
Sbjct: 671 IPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQ 730

Query: 586 YGCRVIQ 606
           YG  VIQ
Sbjct: 731 YGNYVIQ 737

>YDHE_SCHPO (Q92359) Hypothetical protein C6G9.14 in chromosome I|
          Length = 681

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 27/59 (45%), Positives = 36/59 (61%)
 Frame = +1

Query: 430 VFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
           VFAE  P+ + LM D FGNY+ QK FEH +  QR      +A  +VP+S  M+G R +Q
Sbjct: 376 VFAETHPYLAVLMVDAFGNYLCQKLFEHASEAQRSTFIQIIAPKLVPISFNMHGTRALQ 434



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +1

Query: 391 RSWKTALPKRRRPVFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVP 570
           R +  A P +   +   ++PHA +L+ D FGNYV+Q   E   P     + +     V  
Sbjct: 508 RCFDHASPAQIEQLVEHIVPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRA 567

Query: 571 LSLQMYGCRVIQ 606
           LS Q +   V++
Sbjct: 568 LSTQKFSSNVME 579



 Score = 30.0 bits (66), Expect = 5.4
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 451 HASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVI 603
           H   L+ D F NYVIQ   ++ + +QR +L  ++   +  +     G R++
Sbjct: 602 HLPKLLRDSFANYVIQTALDNASVKQRAELVERIKPLIPSIKNTPCGRRIL 652



 Score = 29.6 bits (65), Expect = 7.1
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +1

Query: 430 VFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
           +F  +      + T   G  V+Q+ F+H +P Q   L   +  H + L    +G  V+Q
Sbjct: 485 IFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQLVEHIVPHALTLVQDAFGNYVLQ 543

>PUF4_YEAST (P25339) Protein PUF4|
          Length = 888

 Score = 49.7 bits (117), Expect(2) = 3e-08
 Identities = 26/59 (44%), Positives = 33/59 (55%)
 Frame = +1

Query: 430 VFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
           +F E   +   LMTD FGNY+IQK  E  T EQR  L    + H V +SL  +G R +Q
Sbjct: 596 IFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQ 654



 Score = 33.1 bits (74), Expect = 0.64
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = +1

Query: 412 PKRRRPVFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYG 591
           P+  + +F  +      + T   G  V+Q+  +HGT EQ  +L  KL   V  L+L  +G
Sbjct: 699 PENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFG 758

Query: 592 CRVIQ 606
             V+Q
Sbjct: 759 NYVVQ 763



 Score = 32.3 bits (72), Expect = 1.1
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +1

Query: 448 PHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
           P+   L  D+ GN+VIQK  +   PE  + +   ++   + ++   +GC V+Q
Sbjct: 675 PYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQ 727



 Score = 27.7 bits (60), Expect(2) = 3e-08
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 297 KSNRARRVELSDITGRIVDFSADQHGSRFIQQKLE 401
           +S+R     L    G I     DQHG RF+Q++L+
Sbjct: 552 ESSRFADAVLDQYIGSIHSLCKDQHGCRFLQKQLD 586

>MCP2_SCHPO (O74438) Meiotic coiled-coil protein 2|
          Length = 703

 Score = 49.3 bits (116), Expect(2) = 3e-06
 Identities = 19/62 (30%), Positives = 38/62 (61%)
 Frame = +1

Query: 421 RRPVFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRV 600
           ++ +   ++     LM + FGN+++Q+ FEHGT  Q R + + + G+++ L+   +GC V
Sbjct: 391 KQNIVDSIISQIHPLMLNRFGNFLVQRCFEHGTAPQIRQMGSAMLGNMLKLATDPFGCHV 450

Query: 601 IQ 606
           +Q
Sbjct: 451 VQ 452



 Score = 35.0 bits (79), Expect = 0.17
 Identities = 16/70 (22%), Positives = 33/70 (47%)
 Frame = +1

Query: 397 WKTALPKRRRPVFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLS 576
           ++  + K +R    E++ H   +    +GN+V+Q   E+G  E  + +   L    V  S
Sbjct: 531 FENCVEKDKRECIEEIIFHLDGIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFS 590

Query: 577 LQMYGCRVIQ 606
           +  +  +VI+
Sbjct: 591 IDQFASKVIE 600



 Score = 32.7 bits (73), Expect = 0.84
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 463 LMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRV 600
           + +D +GNY+IQ+  + G P ++  +   +  H+V L    YG +V
Sbjct: 633 IASDQYGNYLIQQIIQLGQPAEKNLVITHIKKHMVSLRGSKYGQKV 678



 Score = 20.8 bits (42), Expect(2) = 3e-06
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 357 SADQHGSRFIQQKLE 401
           S DQ  S F+QQKL+
Sbjct: 370 SNDQQSSIFLQQKLK 384

>MPT5_YEAST (P39016) Suppressor protein MPT5 (Protein HTR1)|
          Length = 834

 Score = 41.6 bits (96), Expect(2) = 7e-06
 Identities = 19/59 (32%), Positives = 34/59 (57%)
 Frame = +1

Query: 430 VFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
           ++ ++ P    L+ D FGNY++QK  ++ T EQ+  L   +  +V  +S+  YG R +Q
Sbjct: 220 MYEQIKPFFLDLILDPFGNYLVQKLCDYLTAEQKTLLIQTIYPNVFQISINQYGTRSLQ 278



 Score = 27.3 bits (59), Expect(2) = 7e-06
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +3

Query: 300 SNRARRVELSDITGRIVDF---SADQHGSRFIQQKLE 401
           S  +  VE+S +  R +D+   + DQ G RF+Q+KLE
Sbjct: 172 STSSSMVEISALPLRDLDYIKLATDQFGCRFLQKKLE 208

>YD15_SCHPO (Q10238) Putative regulatory protein C4G9.05|
          Length = 581

 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 22/55 (40%), Positives = 34/55 (61%)
 Frame = +1

Query: 442 VLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
           +LP + +LM + FGN++IQK FE+ T  Q +  +  L  HV  LS+  +G  V+Q
Sbjct: 292 ILPFSVTLMKNKFGNFLIQKCFEYSTEAQLQSFSYFLKKHVKELSIDAFGSHVLQ 346



 Score = 34.7 bits (78), Expect = 0.22
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = +1

Query: 415 KRRRPVFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGC 594
           K +R    E++ +   ++   +GN+VIQ   EHG+   ++ +   L   V   S   Y  
Sbjct: 431 KDKRTCLDEIINNMDQIICGQWGNWVIQHIIEHGSEPDKQRILNSLLKEVESYSTNRYAS 490

Query: 595 RVIQ 606
           +V++
Sbjct: 491 KVVE 494



 Score = 33.1 bits (74), Expect = 0.64
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 463 LMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRV 600
           + ++ +GNY++Q   +  TP Q   +A  L  H+V L    YG R+
Sbjct: 527 IASNQYGNYIVQYLLQVATPSQINLMAEHLKKHMVSLRGHKYGQRI 572

>YAD3_SCHPO (Q09829) Hypothetical protein C4G8.03c in chromosome I|
          Length = 780

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +1

Query: 433 FAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
           F E+      LM D FGNY+ QK F + + EQ+  +   +   +V +   +YG R +Q
Sbjct: 496 FPEIRQSVVQLMIDPFGNYMCQKLFVYASREQKLSMLNGIGEGIVDICSNLYGTRSMQ 553



 Score = 34.7 bits (78), Expect = 0.22
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 400 KTALPKRRRPVFAEVL--PHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVP 570
           +TA P  R  +  E L  P+   L+ D + NYV+Q+F  +   E ++ L  +   HV+P
Sbjct: 702 RTASPSTREQMLQEFLSFPNIEQLLDDCYANYVMQRFL-NVADESQKFLILRSISHVIP 759



 Score = 32.0 bits (71), Expect(2) = 0.12
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = +1

Query: 442 VLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
           ++P  ++L  D  G +V+QK      PE+   L   +  +++ L+   +GC ++Q
Sbjct: 572 IIPSLTTLACDNNGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQ 626



 Score = 29.3 bits (64), Expect = 9.3
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 463 LMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
           L+ + +GNY++Q   E         +  K  G++  LSLQ +    I+
Sbjct: 651 LVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSSNAIE 698



 Score = 22.3 bits (46), Expect(2) = 0.12
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 276 CTFLEELKSNRARRVELSDITGRIVDFSADQHGSRFIQQKLENCTAEEK 422
           C  L    S   +   L+ I   IVD  ++ +G+R +Q  ++  T+ E+
Sbjct: 516 CQKLFVYASREQKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQ 564

>CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity factor 6|
          Length = 545

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 18/111 (16%)
 Frame = +3

Query: 99  VGAPLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSG---------------- 230
           +G PL     P  QG P  G  P+   +PA F P   NM +  G                
Sbjct: 327 LGPPLGLAPPPHMQGPPPGGPPPAPHVNPAFFPPPGNNMPSSDGRGPPPGDPYGRPPPYD 386

Query: 231 --FQGQREREKFDSPKACTFLEELKSNRARRVELSDITGRIVDFSADQHGS 377
             F G R+ +   +P +    EE+  NR R +  S I+  + D SA  +GS
Sbjct: 387 RDFPGGRDMDASRTPLSEAEFEEI-MNRNRAISSSAISRAVSDASAADYGS 436

>PEN_DROME (O61345) Protein penguin|
          Length = 737

 Score = 34.3 bits (77), Expect = 0.29
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +1

Query: 400 KTALPKRRRPVFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLS 576
           K A P  R  +  ++LP    +    +  + +Q+  ++G P  +  L   L GH+V L+
Sbjct: 190 KYASPALRAEISEKLLPFTVEMCQSKYAQFCVQRMLKYGAPATKAKLVDSLYGHIVRLA 248

>CRSP2_HUMAN (O60244) CRSP complex subunit 2 (Cofactor required for Sp1|
            transcriptional activation subunit 2) (Transcriptional
            coactivator CRSP150) (Vitamin D3 receptor-interacting
            protein complex 150 kDa component) (DRIP150) (Thyroid
            hormone receptor-ass
          Length = 1454

 Score = 33.9 bits (76), Expect = 0.38
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +3

Query: 30   LXAVPPLSVVGETVPNYHGISPYVGAPLTYPTSPVFQGQPFSGISPSGR 176
            L A  P S V    P+ HGIS   GA    P   +    P++ +SPSGR
Sbjct: 1057 LRAPSPASFVPTPPPSSHGISIGPGASFASPHGTLDPSSPYTMVSPSGR 1105

>GLT4_WHEAT (P08489) Glutenin, high molecular weight subunit PW212 precursor|
          Length = 838

 Score = 33.5 bits (75), Expect = 0.49
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +3

Query: 93  PYVGAPLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSGFQGQR 245
           P  G P  YPTSP+  GQ   G  P+    P + Q   +      G QGQ+
Sbjct: 521 PGQGQPGYYPTSPLQPGQGQPGYDPTSPQQPGQGQQPGQLQQPAQGQQGQQ 571



 Score = 32.0 bits (71), Expect = 1.4
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +3

Query: 84  GISPYVGAPLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSGFQGQRERE 254
           G  P  G P  YPTSP   GQ   G  P+    P + Q   +        QGQ+ ++
Sbjct: 356 GQQPGQGQPGYYPTSPQQSGQGQPGYYPTSSQQPTQSQQPGQGQQGQQVGQGQQAQQ 412

>GLT5_WHEAT (P10388) Glutenin, high molecular weight subunit DX5 precursor|
          Length = 839

 Score = 33.5 bits (75), Expect = 0.49
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +3

Query: 93  PYVGAPLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSGFQGQR 245
           P  G P  YPTSP+  GQ   G  P+    P + Q   +      G QGQ+
Sbjct: 516 PGQGQPGYYPTSPLQPGQGQPGYDPTSPQQPGQGQQPGQLQQPAQGQQGQQ 566



 Score = 32.0 bits (71), Expect = 1.4
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +3

Query: 84  GISPYVGAPLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSGFQGQRERE 254
           G  P  G P  YPTSP   GQ   G  P+    P + Q   +        QGQ+ ++
Sbjct: 351 GQQPGQGQPGYYPTSPQQSGQGQPGYYPTSSQQPTQSQQPGQGQQGQQVGQGQQAQQ 407

>ADCY3_RAT (P21932) Adenylate cyclase type 3 (EC 4.6.1.1) (Adenylate cyclase|
           type III) (Adenylate cyclase, olfactive type) (ATP
           pyrophosphate-lyase 3) (Adenylyl cyclase 3) (AC-III)
           (AC3)
          Length = 1144

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 30/131 (22%), Positives = 53/131 (40%)
 Frame = +3

Query: 60  GETVPNYHGISPYVGAPLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSGFQG 239
           G  +PN        GAP + P+SP           P+G          S + +  +  + 
Sbjct: 509 GSALPN--------GAPASKPSSPAL----IETKEPNG----------SAHASGSTSEEA 546

Query: 240 QREREKFDSPKACTFLEELKSNRARRVELSDITGRIVDFSADQHGSRFIQQKLENCTAEE 419
           + +  + D+P           N  RR+ L D+  R+VD S D+H    + Q L     E 
Sbjct: 547 EEQEAQADNPSF--------PNPRRRLRLQDLADRVVDASEDEHE---LNQLLNEALLER 595

Query: 420 KAARVCRSSSS 452
           ++A+V +  ++
Sbjct: 596 ESAQVVKKRNT 606

>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3530

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 448  PHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHV 564
            PH      ++FGNY++QK      PE R ++ A+LA  V
Sbjct: 2099 PHLHGARENIFGNYIVQKGL--AVPELRDEILAQLANQV 2135

>ADCY3_HUMAN (O60266) Adenylate cyclase type 3 (EC 4.6.1.1) (Adenylate cyclase|
           type III) (Adenylate cyclase, olfactive type) (ATP
           pyrophosphate-lyase 3) (Adenylyl cyclase 3) (AC-III)
           (AC3)
          Length = 1144

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 303 NRARRVELSDITGRIVDFSADQHGSRFIQQKLENCTAEEKAARVCRSSSS 452
           N  RR+ L D+  R+VD S D+H    + Q L     E ++A+V +  ++
Sbjct: 562 NPRRRLRLQDLADRVVDASEDEHE---LNQLLNEALLERESAQVVKKRNT 608

>ADCY3_MOUSE (Q8VHH7) Adenylate cyclase type 3 (EC 4.6.1.1) (Adenylate cyclase|
           type III) (Adenylate cyclase, olfactive type) (ATP
           pyrophosphate-lyase 3) (Adenylyl cyclase 3) (AC-III)
           (AC3)
          Length = 1145

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 303 NRARRVELSDITGRIVDFSADQHGSRFIQQKLENCTAEEKAARVCRSSSS 452
           N  RR+ L D+  R+VD S D+H    + Q L     E ++A+V +  ++
Sbjct: 561 NPRRRLRLQDLADRVVDASEDEHE---LNQLLNEALLERESAQVVKKRNT 607

>FZD7_MOUSE (Q61090) Frizzled 7 precursor (Frizzled-7) (Fz-7) (mFz7)|
          Length = 572

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +3

Query: 102 GAPLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSGFQGQREREKFDSPKAC 278
           G+P  YPT+P     PF+ +SPS       F  +      V  + G R   + D    C
Sbjct: 174 GSPTAYPTAPYLPDPPFTAMSPSDGRGRLSFPFSCPRQLKVPPYLGYRFLGERDCGAPC 232

>FBF2_CAEEL (Q09312) Fem-3 mRNA-binding factor 2|
          Length = 632

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
 Frame = +1

Query: 463 LMTDVFGNYVIQKFF-------EHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
           L T++FGNY++Q          + G  +++  L   ++  +  + L  + CRVIQ
Sbjct: 237 LSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQ 291

>YS83_CAEEL (Q09622) Hypothetical protein ZK945.3 in chromosome II|
          Length = 766

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = +1

Query: 430 VFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
           +F E+ P    +  +V+  + ++K  ++GT EQR  +     GH   L    +   V++
Sbjct: 310 LFNELTPEIVRMSKNVYSKFFVKKMLKNGTKEQRDIIINAFRGHAPTLLRIKHAAEVLE 368

>MMP9_MOUSE (P41245) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)|
           (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase)
           (Gelatinase B) (GELB)
          Length = 730

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 60  GETVPNYHGISPYVGAPLTYPTSPVFQGQPFSGISPSGRND 182
           G  +P Y+G S   GAP  +P +  F+G+ +S  +  GRND
Sbjct: 215 GVVIPTYYGNSN--GAPCHFPFT--FEGRSYSACTTDGRND 251

>TIM50_PHYIN (Q5S7T7) Import inner membrane translocase subunit TIM50,|
           mitochondrial precursor (NIF domain protein 3)
          Length = 409

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
 Frame = +3

Query: 177 NDPARFQPASRNMTAVSGFQGQREREKFDSPKACTFLEELKSNRA---RRV--ELSDITG 341
           +DPA +Q    N   V+ F   R+R+  +      FL+ L S R    R+V  E  D  G
Sbjct: 268 DDPAAYQLQPENAIPVTPFTNGRDRDDHELKDLIPFLKALASERVPDFRQVIGEFRDEDG 327

Query: 342 RIVDFSADQHGSRFIQQKLENCTAEEK 422
            + D  A ++G+R  Q +++    ++K
Sbjct: 328 VVRDL-ATKYGARVHQLEMQKEQKKKK 353

>CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity factor 6|
          Length = 551

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 21/114 (18%)
 Frame = +3

Query: 99  VGAPLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSGFQGQ------------ 242
           +G PLT    P   G P     P+   +PA F P + +    S  +G             
Sbjct: 331 LGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPPY 390

Query: 243 ---------REREKFDSPKACTFLEELKSNRARRVELSDITGRIVDFSADQHGS 377
                    RE +   +P +    EE+  NR R +  S I+  + D SA  +GS
Sbjct: 391 DRGDYGPPGREMDTARTPLSEAEFEEI-MNRNRAISSSAISRAVSDASAGDYGS 443

>CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity factor 6|
           (Cleavage and polyadenylation specificity factor 68 kDa
           subunit) (CPSF 68 kDa subunit) (Pre-mRNA cleavage factor
           Im 68-kDa subunit) (Protein HPBRII-4/7)
          Length = 551

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 21/114 (18%)
 Frame = +3

Query: 99  VGAPLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSGFQGQ------------ 242
           +G PLT    P   G P     P+   +PA F P + +    S  +G             
Sbjct: 331 LGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPPY 390

Query: 243 ---------REREKFDSPKACTFLEELKSNRARRVELSDITGRIVDFSADQHGS 377
                    RE +   +P +    EE+  NR R +  S I+  + D SA  +GS
Sbjct: 391 DRGDYGPPGREMDTARTPLSEAEFEEI-MNRNRAISSSAISRAVSDASAGDYGS 443

>CPSF6_CHICK (Q5ZL34) Cleavage and polyadenylation specificity factor 6|
          Length = 551

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 21/114 (18%)
 Frame = +3

Query: 99  VGAPLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSGFQGQ------------ 242
           +G PLT    P   G P     P+   +PA F P + +    S  +G             
Sbjct: 331 LGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPANSGIPTSDSRGPPPTDPYGRPPPY 390

Query: 243 ---------REREKFDSPKACTFLEELKSNRARRVELSDITGRIVDFSADQHGS 377
                    RE +   +P +    EE+  NR R +  S I+  + D SA  +GS
Sbjct: 391 DRGDYGPPGREMDAARTPLSEAEFEEI-MNRNRAISSSAISRAVSDASAGDYGS 443

>Y2320_MYCBO (P63485) Hypothetical protein Mb2320|
          Length = 323

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 340 PVISDSSTLRALLDLSSSRKVHAFGLSNFSLSR 242
           PV+ DS  +  + DL  S  + A G+SN+SL+R
Sbjct: 121 PVVPDSVIMPGMRDLLDSGDIGAAGVSNYSLAR 153

>Y2298_MYCTU (P63484) Hypothetical protein Rv2298/MT2355|
          Length = 323

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 340 PVISDSSTLRALLDLSSSRKVHAFGLSNFSLSR 242
           PV+ DS  +  + DL  S  + A G+SN+SL+R
Sbjct: 121 PVVPDSVIMPGMRDLLDSGDIGAAGVSNYSLAR 153

>CADC_ECOLI (P23890) Transcriptional activator cadC|
          Length = 512

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 19/73 (26%), Positives = 37/73 (50%)
 Frame = +1

Query: 358 ALTNMVAVSSSRSWKTALPKRRRPVFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRD 537
           A+ N +  S S++     P+R +    ++LPH  +L+T+    Y    +  HG  ++  +
Sbjct: 301 AIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNF---YQAHDYLLHG-DDKSLN 356

Query: 538 LAAKLAGHVVPLS 576
            A++L G +V  S
Sbjct: 357 RASELLGEIVQSS 369

>YDH2_SCHPO (Q92347) Hypothetical protein C6G9.02c in chromosome I|
          Length = 655

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 430 VFAEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYG 591
           ++ EV      +  +VFG+ V++K F   T  Q +   + L GH V L    +G
Sbjct: 93  IYREVQGKELIVCNNVFGSKVLEKLFPLSTSRQIKSFFSALNGHYVELIQTTFG 146

>PYP2_SCHPO (P32586) Tyrosine-protein phosphatase 2 (EC 3.1.3.48)|
           (Protein-tyrosine phosphatase 2) (PTPase 2)
          Length = 711

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 35/179 (19%), Positives = 64/179 (35%), Gaps = 31/179 (17%)
 Frame = +3

Query: 15  AYHPMLXAVPPLSVVGETVPNYHGISPYVGAPLTYPTSPVFQGQPFSGIS---------P 167
           A +P    + P S+   T  +        G+PL+ P S      P+  IS         P
Sbjct: 201 AEYPGFSGLTPFSIHSPTASSVRSCQSIYGSPLSPPNSAFQAEMPYFPISPAISCASSCP 260

Query: 168 SGRNDPARF---------QPASRNMTAVSGFQGQREREKFDSPKACTFLEELKSNRARRV 320
           S  ++   F          PA  ++ +V  +     + +  + +  +F   +KS+     
Sbjct: 261 STPDEQKNFFIVGNAPQQTPARPSLRSVPSYPSSNNQRRPSASRVRSFSNYVKSSNVVNP 320

Query: 321 ELSDITGRIV-------DFSADQHGSRFIQQKLE------NCTAEEKAARVCRSSSSCF 458
            LS  +  I+       D +A   G+  +  KL+      N     K   + R++  CF
Sbjct: 321 SLSQASLEIIPRKSMKRDSNAQNDGTSTMTSKLKPSVGLSNTRDAPKPGGLRRANKPCF 379

>K0020_MOUSE (Q8BKS9) Protein KIAA0020|
          Length = 647

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 490 VIQKFFEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
           VIQ F ++G  EQR+    +L G +V LS   Y   +++
Sbjct: 181 VIQCFIQYGNEEQRKQAFQELQGDLVELSKAKYSRNIVK 219

>FBF1_CAEEL (Q9N5M6) Fem-3 mRNA-binding factor 1|
          Length = 614

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
 Frame = +1

Query: 463 LMTDVFGNYVIQKF-------FEHGTPEQRRDLAAKLAGHVVPLSLQMYGCRVIQ 606
           L T++FGNY +Q+        ++    +++  L   ++  +  + L  + CRVIQ
Sbjct: 235 LSTNIFGNYFVQEIIGMSLTTYDDDNIKRQEKLKNFISSQMTDMCLDKFACRVIQ 289

>MATK_WELMI (Q8MEW9) Maturase K (Intron maturase)|
          Length = 524

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -1

Query: 592 IHTSEGSKVQHDQQAWQQDPFFAQEFHVQKTFGSHNSQTHQSLKMKHEEELLQTRAAFSS 413
           +   E SK+      W+Q  + A+     K+FGS   QTH   KMK +   ++    FS 
Sbjct: 207 VSKGESSKIS----LWKQKCYRAKF----KSFGSFAEQTHFHRKMKLKNPKIKAHEKFSE 258

Query: 412 AVQFSNF 392
              FS++
Sbjct: 259 VFFFSHY 265


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,064,489
Number of Sequences: 219361
Number of extensions: 1984980
Number of successful extensions: 5888
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 5595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5877
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)