ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baalo10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7919 Score = 212 bits (107), Expect = 9e-52 Identities = 328/395 (83%), Gaps = 5/395 (1%) Strand = Plus / Plus Query: 141 ttcggagcgtgaggattcattcaactacgtcagtttgtctacttcacggattcgttcttc 200 ||||||| |||||||||| ||| || |||| | | ||| ||||| ||| ||||||||| Sbjct: 2796 ttcggagtgtgaggattcgttcgacaacgttggctcatcttcttcatggaatcgttcttc 2855 Query: 201 ttccatgctggatc-caggcaatatgat-catttccctatataccagtactatcattgct 258 |||| || ||||| ||||||| |||| ||||||| | |||||| ||||||||||||| Sbjct: 2856 ttccgagcgggatctcaggcaagatgacacatttccgtggataccactactatcattgct 2915 Query: 259 atgctagttgtgtcagttctatcgctatgtctcgctatctaccacctgttatgtcaagcc 318 ||||||||||| ||||| || ||||||| |||| ||||||| |||| |||| |||| Sbjct: 2916 atgctagttgtcctgcttctaccgttatgtcttgctacctaccacttgtt-tgtcgagcc 2974 Query: 319 tccctacatttccatgaaaagcctctaacccctccacatccgagcaaacctttgtttggc 378 |||| ||||| |||||| ||||||||| ||||| ||||||| |||||||||||||||||| Sbjct: 2975 tcccaacattgccatgataagcctctagccccttcacatcccagcaaacctttgtttggc 3034 Query: 379 tatgttactgcttgcttggcccttcttatagcgtttccagttgcaagtgtagttgcttcc 438 |||||||| ||||||| |||||||||||||||||| || |||| ||| |||||||||| Sbjct: 3035 tatgttaccgcttgctcaacccttcttatagcgtttctagctgcaggtgcagttgcttcc 3094 Query: 439 atatga-aacatggatttcttgat-atatcacaatattatttctatttaatttcatgcac 496 || || |||||||| | ||| | ||||||||||||||| ||||| ||||| |||||| Sbjct: 3095 atgcgacaacatggacattttgttgttatcacaatattattgctattcaatttgatgcac 3154 Query: 497 ctatatactttgtaaaaagtggaaggcttggcctt 531 |||| |||| ||||| |||| |||||||||||| Sbjct: 3155 ttatacacttggtaaagggtggtaggcttggcctt 3189
>gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7731 Score = 210 bits (106), Expect = 4e-51 Identities = 247/285 (86%), Gaps = 8/285 (2%) Strand = Plus / Plus Query: 141 ttcggagcgtgaggattcattcaactacgtcagtttgtctacttcacggattcgttcttc 200 ||||||| |||||||||| ||| |||| || | | |||| ||||||||||||||||||| Sbjct: 2710 ttcggagtgtgaggattcgttcgactatgttggctcgtcttcttcacggattcgttcttc 2769 Query: 201 ttccatgctggatc-caggcaatatgatc-atttccctatataccagtactatcattgct 258 ||||| || ||||| ||||||| |||| | |||||||| |||||| |||||||||||| Sbjct: 2770 ttccaagcgggatctcaggcaagatgacccatttccctggataccattactatcattgcc 2829 Query: 259 atgctagttgtgtcagttctatcgctatgtctcgctatctaccacctgttatgtcaagcc 318 ||||||||||| || |||||||||| ||||||||| ||||||| ||| |||||||||| Sbjct: 2830 atgctagttgtctcgtttctatcgct--gtctcgctacctaccac-tgt-atgtcaagcc 2885 Query: 319 tccctacatttccatgaaaagcctctaacccctccacatccgagcaaacctttgtttggc 378 |||| | ||| ||||||||||||||||||||||||| |||| ||||||| || ||||||| Sbjct: 2886 tcccaa-attgccatgaaaagcctctaacccctccagatcccagcaaacatt-gtttggc 2943 Query: 379 tatgttactgcttgcttggcccttcttatagcgtttccagttgca 423 |||||||||||||||| ||||||||||||||||| | ||||||| Sbjct: 2944 tatgttactgcttgctcagcccttcttatagcgttgctagttgca 2988 Score = 75.8 bits (38), Expect = 1e-10 Identities = 79/90 (87%), Gaps = 2/90 (2%) Strand = Plus / Plus Query: 463 tatcacaatattatttctatttaatttcatgcac-ctatatactttgtaaaaagtggaag 521 ||||||||||||||| ||||||||||| |||||| ||||||||| ||||| |||||| Sbjct: 3007 tatcacaatattattgctatttaatttaatgcactttatatacttggtaaagggtggaat 3066 Query: 522 gcttggccttctagatcggtgttttgttcc 551 |||||||||| | | ||||||||||||||| Sbjct: 3067 gcttggcctt-ttgctcggtgttttgttcc 3095
>gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7586 Score = 184 bits (93), Expect = 2e-43 Identities = 241/284 (84%), Gaps = 6/284 (2%) Strand = Plus / Plus Query: 141 ttcggagcgtgaggattcattcaactacgtcagtttgtctacttcacggattcgttcttc 200 ||||||| |||||||||| ||| ||||||| ||| || |||||||||| |||||||||| Sbjct: 2508 ttcggagtgtgaggattcgttcgactacgttggttcgtttacttcacggtttcgttcttc 2567 Query: 201 ttccatgctggatc-caggcaatatgatcatttccctatataccagtactatcattgcta 259 ||||| || ||||| | ||||| |||||||||||||| |||||| |||||||||||| | Sbjct: 2568 ttccaagcgggatctcgggcaagatgatcatttccctggataccattactatcattgcca 2627 Query: 260 tgctagttgtgtcagttctatcgctatgtctcgctatctaccacctgttatgtcaagcct 319 |||||||||| ||| | ||||| | |||||||||| ||||||| || | || ||||||| Sbjct: 2628 tgctagttgtttcattgctatcac--tgtctcgctacctaccacttg-tgtgccaagcct 2684 Query: 320 ccctacatttccatgaaaagcctctaacccctccacatccgagcaaacctttgtttggct 379 ||| | | | |||||||||||||||||||||||||| || |||||| | |||||||||| Sbjct: 2685 ccc-aaagtgccatgaaaagcctctaacccctccacgtctcagcaaa-cattgtttggct 2742 Query: 380 atgttactgcttgcttggcccttcttatagcgtttccagttgca 423 ||||||| ||||||| |||||||||||||| || | ||||||| Sbjct: 2743 atgttaccgcttgctcagcccttcttatagcattgctagttgca 2786 Score = 75.8 bits (38), Expect = 1e-10 Identities = 79/90 (87%), Gaps = 2/90 (2%) Strand = Plus / Plus Query: 463 tatcacaatattatttctatttaatttcatgcacct-atatactttgtaaaaagtggaag 521 ||||||||||||||| ||||||||||| |||||| | |||||||| ||||| ||||||| Sbjct: 2805 tatcacaatattattgctatttaatttaatgcactttatatacttggtaaagggtggaag 2864 Query: 522 gcttggccttctagatcggtgttttgttcc 551 |||||||||| | ||||||||||||||| Sbjct: 2865 gcttggcctttttc-tcggtgttttgttcc 2893
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 131 bits (66), Expect = 3e-27 Identities = 165/194 (85%), Gaps = 3/194 (1%) Strand = Plus / Plus Query: 361 agcaaacctttgtttggctatgttactgcttgcttggcccttcttatagcgtttccagtt 420 |||||||| || |||||||||||||||||||||| |||| | |||||||| | |||| Sbjct: 177520 agcaaaccactgattggctatgttactgcttgcttaaccctgttgatagcgttgctagtt 177579 Query: 421 gcaagtgtagttgcttccatatgaaa-catggatttcttgatatatcacaatatt-attt 478 ||| ||| |||||||||||| ||||| ||||| || |||| |||||||| ||||| | | Sbjct: 177580 gcaggtgcagttgcttccatgtgaaaacatgggttccttgttatatcaccatattgaatg 177639 Query: 479 ctatttaatttcatgcacctatatactttgtaaaaagtggaaggcttggcc-ttctagat 537 ||||||||||| |||||||||||||||| |||||| |||||||||| |||| |||||| Sbjct: 177640 ctatttaatttaatgcacctatatacttggtaaaaggtggaaggctcggcctttctagcc 177699 Query: 538 cggtgttttgttcc 551 ||||||||||||| Sbjct: 177700 tggtgttttgttcc 177713 Score = 121 bits (61), Expect = 3e-24 Identities = 135/157 (85%), Gaps = 2/157 (1%) Strand = Plus / Plus Query: 377 gctatgttactgcttgcttggcccttcttatagcgtttccagttgcaagtgtagttgctt 436 ||||||||||||||||||| |||| | |||||||| | ||||||| ||| |||||||| Sbjct: 130203 gctatgttactgcttgcttaaccctgttgatagcgttgctagttgcaggtgcagttgctt 130262 Query: 437 ccatatgaaa-catggatttcttgatatatcacaatatt-atttctatttaatttcatgc 494 |||| ||||| ||||| || |||| |||||||| ||||| | | ||||||||||| |||| Sbjct: 130263 ccatgtgaaaacatgggttccttgttatatcaccatattgaatgctatttaatttaatgc 130322 Query: 495 acctatatactttgtaaaaagtggaaggcttggcctt 531 |||||||||||| |||||| |||||||||| |||||| Sbjct: 130323 acctatatacttggtaaaaggtggaaggctcggcctt 130359 Score = 81.8 bits (41), Expect = 2e-12 Identities = 90/105 (85%), Gaps = 1/105 (0%) Strand = Plus / Plus Query: 164 actacgtcagtttgtctacttcacggattcgttcttcttccatgctggatc-caggcaat 222 ||||||| ||| |||||||||||||| | |||||||||||| | ||||| ||||||| Sbjct: 325545 actacgttggttcgtctacttcacggagttgttcttcttccaagtgggatctcaggcaag 325604 Query: 223 atgatcatttccctatataccagtactatcattgctatgctagtt 267 |||| |||||||| | |||||| |||||||||||| ||||||||| Sbjct: 325605 atgaccatttccccagataccattactatcattgccatgctagtt 325649 Score = 79.8 bits (40), Expect = 9e-12 Identities = 101/120 (84%), Gaps = 1/120 (0%) Strand = Plus / Plus Query: 149 gtgaggattcattcaactacgtcagtttgtctacttcacggattcgttcttcttccatgc 208 ||||||| ||||| |||||||| ||| || | ||||||||| | ||||||||||| || Sbjct: 177308 gtgaggacccattcgactacgtcggttcgtgttcttcacggagacattcttcttccaagc 177367 Query: 209 tggatc-caggcaatatgatcatttccctatataccagtactatcattgctatgctagtt 267 ||||| ||||||| |||| |||||||| | |||||| |||||||||||| ||||||||| Sbjct: 177368 gggatctcaggcaagatgaccatttccccagataccattactatcattgccatgctagtt 177427 Score = 65.9 bits (33), Expect = 1e-07 Identities = 88/105 (83%), Gaps = 1/105 (0%) Strand = Plus / Plus Query: 164 actacgtcagtttgtctacttcacggattcgttcttcttccatgctggatc-caggcaat 222 |||||||| ||| || | ||||||||| | ||||||||||| || ||||| ||||||| Sbjct: 129990 actacgtcggttcgtgtgcttcacggagacattcttcttccaagcgggatctcaggcaag 130049 Query: 223 atgatcatttccctatataccagtactatcattgctatgctagtt 267 |||| ||||||| | |||||| |||||||||||| ||||||||| Sbjct: 130050 atgaccatttccacagataccattactatcattgccatgctagtt 130094 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 479 ctatttaatttcatgcacctatatactttgtaaaaagtggaaggct 524 ||||||||||| |||||||||||||||| |||||| | |||||||| Sbjct: 325861 ctatttaatttaatgcacctatatacttggtaaaacggggaaggct 325906
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 127 bits (64), Expect = 4e-26 Identities = 161/192 (83%), Gaps = 1/192 (0%) Strand = Plus / Minus Query: 361 agcaaacctttgtttggctatgttactgcttgcttggcccttcttatagcgtttccagtt 420 |||||||| || |||||||||||||||||||||| |||| | |||||||| | |||| Sbjct: 66247 agcaaaccactgattggctatgttactgcttgcttcaccctgttgatagcgttgctagtt 66188 Query: 421 gcaagtgtagttgcttccatatgaaacatggatttcttgatatatcacaatattatttct 480 ||| ||| |||||||||||| |||||||||| || |||| ||||||| |||||| | Sbjct: 66187 gcaggtgcagttgcttccatgtgaaacatgggttccttgtcatatcaccatattaaatgc 66128 Query: 481 atttaatttcatgcacctatatactttgtaaaaagtggaaggcttggcc-ttctagatcg 539 |||||||| |||||||||||||||| |||||| |||||||||| |||| |||||| | Sbjct: 66127 ttttaatttaatgcacctatatacttggtaaaaggtggaaggctcggcctttctagcctg 66068 Query: 540 gtgttttgttcc 551 |||||||||||| Sbjct: 66067 gtgttttgttcc 66056 Score = 71.9 bits (36), Expect = 2e-09 Identities = 88/104 (84%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 164 actacgtcagtttgtctacttcacggattcgttcttcttccatgctggatc-caggcaat 222 |||||||| ||| |||| ||||||||| | ||||||||||| || ||||| ||||||| Sbjct: 66443 actacgtcggttcgtctgcttcacggaggcattcttcttccaagcaggatctcaggcaag 66384 Query: 223 atgatcatttccctatataccagtactatcattgctatgctagt 266 |||| |||||||| | ||| || |||||||||||| |||||||| Sbjct: 66383 atgaccatttccccagatatcattactatcattgccatgctagt 66340
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes, complete cds Length = 65979 Score = 125 bits (63), Expect = 2e-25 Identities = 136/159 (85%), Gaps = 1/159 (0%) Strand = Plus / Plus Query: 374 ttggctatgttactgcttgcttggcccttcttatagcgtttccagttgcaagtgtagttg 433 |||||||||||||||||||||| |||| | |||||||| | ||||||| ||| ||||| Sbjct: 9693 ttggctatgttactgcttgcttaaccctgttgatagcgttgctagttgcaggtgcagttg 9752 Query: 434 cttccatatgaaacatggatttcttgatatatcacaatatt-atttctatttaatttcat 492 ||||||| |||||||||| || |||| |||||||| ||||| | | ||||||||||| | Sbjct: 9753 cttccatgtgaaacatgggttccttgttatatcaccatattaaatgctatttaatttaac 9812 Query: 493 gcacctatatactttgtaaaaagtggaaggcttggcctt 531 |||||||||||||| |||||| |||||| ||| |||||| Sbjct: 9813 gcacctatatacttggtaaaaggtggaaagctcggcctt 9851 Score = 81.8 bits (41), Expect = 2e-12 Identities = 90/105 (85%), Gaps = 1/105 (0%) Strand = Plus / Plus Query: 164 actacgtcagtttgtctacttcacggattcgttcttcttccatgctggatc-caggcaat 222 |||||||| ||| |||| ||||||||| | ||| ||||||| || ||||| ||||||| Sbjct: 9484 actacgtcggttcgtctgcttcacggaggcattcctcttccaagcgggatctcaggcaag 9543 Query: 223 atgatcatttccctatataccagtactatcattgctatgctagtt 267 ||||||||||||| | |||||| |||||||||||| ||||||||| Sbjct: 9544 atgatcatttccccagataccattactatcattgccatgctagtt 9588
>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H Length = 59748 Score = 113 bits (57), Expect = 6e-22 Identities = 161/193 (83%), Gaps = 2/193 (1%) Strand = Plus / Minus Query: 361 agcaaacctttgtttggctatgttactgcttgcttggcccttcttatagcgtttccagtt 420 |||||||| || |||||||||||||||||||||| |||| | |||||||| |||| Sbjct: 38694 agcaaaccactgattggctatgttactgcttgcttaaccctgttgatagcgttgttagtt 38635 Query: 421 gcaagtgtagttgcttccatatgaaa-catggatttcttgatatatcacaatattatttc 479 ||| ||| |||||||||||| |||| || || || |||| |||||||| |||||| | | Sbjct: 38634 gcaggtgcagttgcttccatgcgaaagcacgggttccttgttatatcaccatattaatgc 38575 Query: 480 tatttaatttcatgcacctatatactttgtaaaaagtggaaggcttggcc-ttctagatc 538 |||||||||| |||||||||||||||| | |||| |||||||||| |||| |||||| Sbjct: 38574 tatttaatttaatgcacctatatacttggaaaaaggtggaaggctcggcctttctagcct 38515 Query: 539 ggtgttttgttcc 551 ||||||||||||| Sbjct: 38514 ggtgttttgttcc 38502 Score = 97.6 bits (49), Expect = 4e-17 Identities = 92/105 (87%), Gaps = 1/105 (0%) Strand = Plus / Minus Query: 164 actacgtcagtttgtctacttcacggattcgttcttcttccatgctggatc-caggcaat 222 |||||||||||| |||| ||||||||| | ||||||||||| || ||||| ||||||| Sbjct: 38890 actacgtcagttcgtctgcttcacggaggcattcttcttccaagcgggatctcaggcaag 38831 Query: 223 atgatcatttccctatataccagtactatcattgctatgctagtt 267 ||||||||||||| | |||||| |||||||||||| ||||||||| Sbjct: 38830 atgatcatttccccagataccattactatcattgccatgctagtt 38786
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 111 bits (56), Expect = 2e-21 Identities = 138/164 (84%), Gaps = 1/164 (0%) Strand = Plus / Minus Query: 361 agcaaacctttgtttggctatgttactgcttgcttggcccttcttatagcgtttccagtt 420 |||||||| ||||||||||||||||||||||||| |||| | |||||||| | |||| Sbjct: 4717 agcaaaccactgtttggctatgttactgcttgcttaaccctgttgatagcgttgctagtt 4658 Query: 421 gcaagtgtagttgcttccatatgaaacatggatttcttgatatatcacaatattatttct 480 ||| | | |||||||||||| || ||||| || |||| |||||||| |||||| | || Sbjct: 4657 gcagg-gcagttgcttccatgcaaagcatgggttccttgttatatcaccatattaatgct 4599 Query: 481 atttaatttcatgcacctatatactttgtaaaaagtggaaggct 524 ||||||||| ||| |||||||||||| |||||| |||||||||| Sbjct: 4598 atttaatttaatggacctatatacttggtaaaaggtggaaggct 4555 Score = 71.9 bits (36), Expect = 2e-09 Identities = 88/104 (84%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 164 actacgtcagtttgtctacttcacggattcgttcttcttccatgctggatc-caggcaat 222 |||||||| ||| |||| ||||||||| | ||||||||||| || ||||| ||||||| Sbjct: 4913 actacgtcggttcgtctgcttcacggaggcattcttcttccaagcgggatctcaggcaag 4854 Query: 223 atgatcatttccctatataccagtactatcattgctatgctagt 266 | ||||||||||| | |||||| ||||||||| || |||||||| Sbjct: 4853 aggatcatttccccagataccattactatcatcgccatgctagt 4810
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 111 bits (56), Expect = 2e-21 Identities = 163/195 (83%), Gaps = 4/195 (2%) Strand = Plus / Minus Query: 361 agcaaacctttgtttggctatgttactgcttgcttggcccttcttatagcgtttccagtt 420 |||||||| || ||||||||||||| |||||||| |||| | |||||||| | |||| Sbjct: 104198 agcaaaccactgattggctatgttaccgcttgcttaaccctgttgatagcgttgctagtt 104139 Query: 421 gcaagtgtagttgcttccatatgaaa-catggatttcttgatatatcacaatatt--att 477 ||| ||| || ||||||||| ||||| ||||| || |||| |||||||| ||||| | | Sbjct: 104138 gcaggtgcagatgcttccatgtgaaaacatgggttccttgttatatcaccatatttaaat 104079 Query: 478 tctatttaatttcatgcacctatatactttgtaaaaagtggaaggcttggcc-ttctaga 536 ||||||||||| |||||||||||||||| |||||| |||||||||| |||| |||||| Sbjct: 104078 gctatttaatttaatgcacctatatacttggtaaaaggtggaaggctcggcctttctagc 104019 Query: 537 tcggtgttttgttcc 551 ||||||||||||| Sbjct: 104018 ctggtgttttgttcc 104004 Score = 97.6 bits (49), Expect = 4e-17 Identities = 92/105 (87%), Gaps = 1/105 (0%) Strand = Plus / Minus Query: 164 actacgtcagtttgtctacttcacggattcgttcttcttccatgctggatc-caggcaat 222 |||||||| ||| |||| ||||||||| | |||||||||||| || ||||| ||||||| Sbjct: 104394 actacgtcggttcgtctgcttcacggagttgttcttcttccaggcgggatctcaggcaag 104335 Query: 223 atgatcatttccctatataccagtactatcattgctatgctagtt 267 |||||||||| |||| |||||| |||||||||||| ||||||||| Sbjct: 104334 atgatcattttcctagataccattactatcattgccatgctagtt 104290
>gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposon, partial sequence Length = 7674 Score = 107 bits (54), Expect = 4e-20 Identities = 163/194 (84%), Gaps = 4/194 (2%) Strand = Plus / Plus Query: 361 agcaaacctttgtttggctatgttactgcttgcttggcccttcttatagcgtttccagtt 420 |||||||| || |||||||||||||||||||||| |||| | |||||||| | |||| Sbjct: 2796 agcaaaccactgattggctatgttactgcttgcttaaccctgttgatagcgttgctagtt 2855 Query: 421 gcaagtgtagttgcttccatatgaaa-catggatttcttgatatatcacaatatt-attt 478 ||| ||| |||||||||||| ||||| ||||| || |||| |||||||| |||| | | Sbjct: 2856 gcaggtgcagttgcttccatgtgaaagcatgggttccttgttatatcaccctattaaatg 2915 Query: 479 ctatttaatttcatgcacctatatactttgtaaaaagtggaaggcttggcc-ttctagat 537 ||| ||||||| |||||||||||||||| |||||| |||||||||| |||| |||||| Sbjct: 2916 cta-ttaatttaatgcacctatatacttggtaaaaggtggaaggctcggcctttctagcc 2974 Query: 538 cggtgttttgttcc 551 ||||||||||||| Sbjct: 2975 tggtgttttgttcc 2988 Score = 101 bits (51), Expect = 2e-18 Identities = 138/163 (84%), Gaps = 3/163 (1%) Strand = Plus / Plus Query: 149 gtgaggattcattcaactacgtcagtttgtctacttcacggattcgttcttcttccatgc 208 ||||||| || ||| |||||||| ||| |||| ||||||||| | ||||||||||| || Sbjct: 2586 gtgaggactcgttcgactacgtcggttcgtctgcttcacggaggcattcttcttccaagc 2645 Query: 209 tggatc-caggcaatatgatcatttccctatataccagtactatcattgctatgctagtt 267 ||||| ||||||| ||||||||||||| | |||||| |||||||||||| ||||||||| Sbjct: 2646 gggatctcaggcaagatgatcatttccccagataccattactatcattgccatgctagtt 2705 Query: 268 gtgtcagttctatcg-ctatgtctcgctatctaccacctgtta 309 | || |||||||| |||||||||| | ||||||||||||| Sbjct: 2706 -tatcgcttctatcgtctatgtctcgttgcctaccacctgtta 2747
>gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotransposon long terminal repeat, complete sequence Length = 7575 Score = 107 bits (54), Expect = 4e-20 Identities = 163/194 (84%), Gaps = 4/194 (2%) Strand = Plus / Plus Query: 361 agcaaacctttgtttggctatgttactgcttgcttggcccttcttatagcgtttccagtt 420 |||||||| || |||||||||||||||||||||| |||| | |||||||| | |||| Sbjct: 2796 agcaaaccactgattggctatgttactgcttgcttaaccctgttgatagcgttgctagtt 2855 Query: 421 gcaagtgtagttgcttccatatgaaa-catggatttcttgatatatcacaatatt-attt 478 ||| ||| |||||||||||| ||||| ||||| || |||| |||||||| |||| | | Sbjct: 2856 gcaggtgcagttgcttccatgtgaaagcatgggttccttgttatatcaccctattaaatg 2915 Query: 479 ctatttaatttcatgcacctatatactttgtaaaaagtggaaggcttggcc-ttctagat 537 ||| ||||||| |||||||||||||||| |||||| |||||||||| |||| |||||| Sbjct: 2916 cta-ttaatttaatgcacctatatacttggtaaaaggtggaaggctcggcctttctagcc 2974 Query: 538 cggtgttttgttcc 551 ||||||||||||| Sbjct: 2975 tggtgttttgttcc 2988 Score = 101 bits (51), Expect = 2e-18 Identities = 138/163 (84%), Gaps = 3/163 (1%) Strand = Plus / Plus Query: 149 gtgaggattcattcaactacgtcagtttgtctacttcacggattcgttcttcttccatgc 208 ||||||| || ||| |||||||| ||| |||| ||||||||| | ||||||||||| || Sbjct: 2586 gtgaggactcgttcgactacgtcggttcgtctgcttcacggaggcattcttcttccaagc 2645 Query: 209 tggatc-caggcaatatgatcatttccctatataccagtactatcattgctatgctagtt 267 ||||| ||||||| ||||||||||||| | |||||| |||||||||||| ||||||||| Sbjct: 2646 gggatctcaggcaagatgatcatttccccagataccattactatcattgccatgctagtt 2705 Query: 268 gtgtcagttctatcg-ctatgtctcgctatctaccacctgtta 309 | || |||||||| |||||||||| | ||||||||||||| Sbjct: 2706 -tatcgcttctatcgtctatgtctcgttgcctaccacctgtta 2747
>gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long terminal repeat, partial and complete sequences Length = 11820 Score = 107 bits (54), Expect = 4e-20 Identities = 163/194 (84%), Gaps = 4/194 (2%) Strand = Plus / Plus Query: 361 agcaaacctttgtttggctatgttactgcttgcttggcccttcttatagcgtttccagtt 420 |||||||| || |||||||||||||||||||||| |||| | |||||||| | |||| Sbjct: 2796 agcaaaccactgattggctatgttactgcttgcttaaccctgttgatagcgttgctagtt 2855 Query: 421 gcaagtgtagttgcttccatatgaaa-catggatttcttgatatatcacaatatt-attt 478 ||| ||| |||||||||||| ||||| ||||| || |||| |||||||| |||| | | Sbjct: 2856 gcaggtgcagttgcttccatgtgaaagcatgggttccttgttatatcaccctattaaatg 2915 Query: 479 ctatttaatttcatgcacctatatactttgtaaaaagtggaaggcttggcc-ttctagat 537 ||| ||||||| |||||||||||||||| |||||| |||||||||| |||| |||||| Sbjct: 2916 cta-ttaatttaatgcacctatatacttggtaaaaggtggaaggctcggcctttctagcc 2974 Query: 538 cggtgttttgttcc 551 ||||||||||||| Sbjct: 2975 tggtgttttgttcc 2988 Score = 101 bits (51), Expect = 2e-18 Identities = 138/163 (84%), Gaps = 3/163 (1%) Strand = Plus / Plus Query: 149 gtgaggattcattcaactacgtcagtttgtctacttcacggattcgttcttcttccatgc 208 ||||||| || ||| |||||||| ||| |||| ||||||||| | ||||||||||| || Sbjct: 2586 gtgaggactcgttcgactacgtcggttcgtctgcttcacggaggcattcttcttccaagc 2645 Query: 209 tggatc-caggcaatatgatcatttccctatataccagtactatcattgctatgctagtt 267 ||||| ||||||| ||||||||||||| | |||||| |||||||||||| ||||||||| Sbjct: 2646 gggatctcaggcaagatgatcatttccccagataccattactatcattgccatgctagtt 2705 Query: 268 gtgtcagttctatcg-ctatgtctcgctatctaccacctgtta 309 | || |||||||| |||||||||| | ||||||||||||| Sbjct: 2706 -tatcgcttctatcgtctatgtctcgttgcctaccacctgtta 2747 Score = 81.8 bits (41), Expect = 2e-12 Identities = 158/193 (81%), Gaps = 3/193 (1%) Strand = Plus / Plus Query: 361 agcaaacctttgtttggctatgttactgcttgcttggcccttcttatagcgtttccagtt 420 |||||||| || |||||||||||||||||||||| || | | || |||| | |||| Sbjct: 10328 agcaaaccactgattggctatgttactgcttgctt-accatgttgttaacgttgctagtt 10386 Query: 421 gcaagtgtagttgcttccatatg-aaacatggatttcttgatatatcacaatattatttc 479 ||| ||| || ||||||||| || |||||||| || || | |||||||| |||||| | | Sbjct: 10387 gcaggtgcagatgcttccatgtgaaaacatgggttcctagttatatcaccatattaatgc 10446 Query: 480 tatttaatttcatgcacctatatactttgtaaaaagtggaaggcttggcc-ttctagatc 538 |||||||||| ||||| |||||||||| |||||| | |||||||| |||| |||||| Sbjct: 10447 tatttaatttaatgcatctatatacttggtaaaaggaggaaggctcggcctttctagcct 10506 Query: 539 ggtgttttgttcc 551 ||||||||||||| Sbjct: 10507 ggtgttttgttcc 10519 Score = 69.9 bits (35), Expect = 8e-09 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand = Plus / Plus Query: 194 gttcttcttccatgctggatc-caggcaatatgatcatttccctatataccagtactatc 252 |||||||||||| || ||||| || |||| ||||||||||||| | |||||| ||||||| Sbjct: 10162 gttcttcttccaagcgggatctcacgcaagatgatcatttccccagataccattactatc 10221 Query: 253 attgctatgctagtt 267 ||||| ||||||||| Sbjct: 10222 attgccatgctagtt 10236
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 103 bits (52), Expect = 6e-19 Identities = 143/172 (83%), Gaps = 1/172 (0%) Strand = Plus / Minus Query: 361 agcaaacctttgtttggctatgttactgcttgcttggcccttcttatagcgtttccagtt 420 |||||||| || |||| ||||||||||||||||| |||| | |||||||| | |||| Sbjct: 69545 agcaaaccactgattggttatgttactgcttgcttaaccctgttgatagcgttgctagtt 69486 Query: 421 gcaagtgtagttgcttccatatgaa-acatggatttcttgatatatcacaatattatttc 479 ||| ||| |||||||||||| || | |||||| || |||| ||||||| |||| | | | Sbjct: 69485 gcaggtgcagttgcttccatgtggatacatgggttccttgtcatatcaccatataaatgc 69426 Query: 480 tatttaatttcatgcacctatatactttgtaaaaagtggaaggcttggcctt 531 ||||| |||| |||||||||||||||| |||||| |||||||||| |||||| Sbjct: 69425 tattttatttaatgcacctatatacttggtaaaaggtggaaggctcggcctt 69374 Score = 89.7 bits (45), Expect = 9e-15 Identities = 91/105 (86%), Gaps = 1/105 (0%) Strand = Plus / Minus Query: 164 actacgtcagtttgtctacttcacggattcgttcttcttccatgctggatc-caggcaat 222 |||||||| ||| |||| ||||||||| | ||||||||||| || ||||| ||||||| Sbjct: 69742 actacgtcggttcgtctgcttcacggaggcattcttcttccaagcgggatctcaggcaag 69683 Query: 223 atgatcatttccctatataccagtactatcattgctatgctagtt 267 ||||||||||||| | |||||| |||||||||||| ||||||||| Sbjct: 69682 atgatcatttccccagataccattactatcattgccatgctagtt 69638
>gb|AF509775.1| Hordeum vulgare subsp. vulgare isolate RSB409A Rpg1 region, genomic sequence Length = 7321 Score = 91.7 bits (46), Expect = 2e-15 Identities = 113/134 (84%), Gaps = 1/134 (0%) Strand = Plus / Plus Query: 177 gtctacttcacggattcgttcttcttccatgctggatc-caggcaatatgatcatttccc 235 |||| |||||||||||||||||||||||| || ||||| |||| || |||| |||||||| Sbjct: 6053 gtctgcttcacggattcgttcttcttccaagcaggatctcaggaaagatgaccatttccc 6112 Query: 236 tatataccagtactatcattgctatgctagttgtgtcagttctatcgctatgtctcgcta 295 ||| || |||||||||||| ||| ||||||| || |||||||||||||||||| | Sbjct: 6113 ccgatatcattactatcattgccatgttagttgtctcgcttctatcgctatgtctcgttg 6172 Query: 296 tctaccacctgtta 309 ||||||| ||||| Sbjct: 6173 cctaccacatgtta 6186 Score = 63.9 bits (32), Expect = 5e-07 Identities = 91/108 (84%), Gaps = 2/108 (1%) Strand = Plus / Plus Query: 419 ttgcaagtgtagttgcttccatatga-aacatggatttcttgatatatcacaatattatt 477 ||||| ||| |||||||||||| ||| |||||| || |||| ||||||| |||||| | Sbjct: 6295 ttgcaggtgcagttgcttccatgtgataacatgagttccttgtcatatcaccatattaat 6354 Query: 478 t-ctatttaatttcatgcacctatatactttgtaaaaagtggaaggct 524 | ||| ||| ||| |||||||||||||||| |||||| |||||||||| Sbjct: 6355 tgctaattattttaatgcacctatatacttggtaaaaggtggaaggct 6402
>gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg1 region, genomic sequence Length = 3124 Score = 91.7 bits (46), Expect = 2e-15 Identities = 113/134 (84%), Gaps = 1/134 (0%) Strand = Plus / Plus Query: 177 gtctacttcacggattcgttcttcttccatgctggatc-caggcaatatgatcatttccc 235 |||| |||||||||||||||||||||||| || ||||| |||| || |||| |||||||| Sbjct: 824 gtctgcttcacggattcgttcttcttccaagcaggatctcaggaaagatgaccatttccc 883 Query: 236 tatataccagtactatcattgctatgctagttgtgtcagttctatcgctatgtctcgcta 295 ||| || |||||||||||| ||| ||||||| || |||||||||||||||||| | Sbjct: 884 ccgatatcattactatcattgccatgttagttgtctcgcttctatcgctatgtctcgttg 943 Query: 296 tctaccacctgtta 309 ||||||| ||||| Sbjct: 944 cctaccacatgtta 957 Score = 63.9 bits (32), Expect = 5e-07 Identities = 91/108 (84%), Gaps = 2/108 (1%) Strand = Plus / Plus Query: 419 ttgcaagtgtagttgcttccatatga-aacatggatttcttgatatatcacaatattatt 477 ||||| ||| |||||||||||| ||| |||||| || |||| ||||||| |||||| | Sbjct: 1066 ttgcaggtgcagttgcttccatgtgataacatgagttccttgtcatatcaccatattaat 1125 Query: 478 t-ctatttaatttcatgcacctatatactttgtaaaaagtggaaggct 524 | ||| ||| ||| |||||||||||||||| |||||| |||||||||| Sbjct: 1126 tgctaattattttaatgcacctatatacttggtaaaaggtggaaggct 1173
>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence Length = 153766 Score = 83.8 bits (42), Expect = 6e-13 Identities = 168/202 (83%), Gaps = 6/202 (2%) Strand = Plus / Plus Query: 149 gtgaggattcattcaactacgtcagtttgtctacttcacggattcgttcttcttccatgc 208 |||||||| ||||| |||||||| |||||||||||||| ||| ||||||||||||| ||| Sbjct: 73347 gtgaggatccattcgactacgtccgtttgtctacttcatggactcgttcttcttccttgc 73406 Query: 209 tgga-tccaggcaatatgatcatttccctatataccagtactatcattgctatgctagtt 267 ||| | ||||||| |||| || | |||| | | || | ||||| ||||| |||||||| Sbjct: 73407 gggatttcaggcaagatgacca-taccctcgaaatcacttctatctttgct-tgctagtt 73464 Query: 268 gtgtcagttctatcgctatgtctcgctatctaccacctgttatgtcaagcctccctacat 327 || ||| ||||||||||||||| |||| ||||||| |||||| ||| ||||||| | || Sbjct: 73465 gt-tca-ttctatcgctatgtcaagctacctaccacttgttatatcatgcctccc-atat 73521 Query: 328 ttccatgaaaagcctctaaccc 349 | ||||| ||||||||||||| Sbjct: 73522 tgccatgtcaagcctctaaccc 73543
>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete sequence Length = 113510 Score = 81.8 bits (41), Expect = 2e-12 Identities = 158/193 (81%), Gaps = 3/193 (1%) Strand = Plus / Minus Query: 361 agcaaacctttgtttggctatgttactgcttgcttggcccttcttatagcgtttccagtt 420 |||||||| || ||||||||||||| |||||||| |||| | ||||||| | |||| Sbjct: 17776 agcaaaccactgattggctatgttaccgcttgctttaccctgtgt-tagcgttgctagtt 17718 Query: 421 gcaagtgtagttgcttccatatgaaa-catggatttcttgatatatcacaatattatttc 479 ||| || || ||||||||| ||||| ||||| | |||| ||||||| |||||| | | Sbjct: 17717 gcagttgcagatgcttccatgtgaaaacatgggtcccttgtcatatcaccatattaatgc 17658 Query: 480 tatttaatttcatgcacctatatactttgtaaaaagtggaaggcttggcc-ttctagatc 538 |||||||||| |||||||||||||||| |||||| |||||||| | |||| |||||| Sbjct: 17657 tatttaatttaatgcacctatatacttggtaaaaggtggaaggttcggcctttctagcct 17598 Query: 539 ggtgttttgttcc 551 ||||||||||||| Sbjct: 17597 ggtgttttgttcc 17585 Score = 75.8 bits (38), Expect = 1e-10 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand = Plus / Minus Query: 195 ttcttcttccatgctggatc-caggcaatatgatcatttccctatataccagtactatca 253 ||||||||||| || ||||| ||||||| ||||||||||||| | |||||| |||||||| Sbjct: 17941 ttcttcttccaagcgggatctcaggcaagatgatcatttccccagataccattactatca 17882 Query: 254 ttgctatgctagtt 267 |||| ||||||||| Sbjct: 17881 ttgccatgctagtt 17868
>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence Length = 215241 Score = 67.9 bits (34), Expect = 3e-08 Identities = 50/54 (92%), Gaps = 1/54 (1%) Strand = Plus / Plus Query: 361 agcaaacctttgtttggctatgttactgc-ttgcttggcccttcttatagcgtt 413 |||||||| |||||||||||||||||||| |||||| |||| |||||||||||| Sbjct: 84107 agcaaaccgttgtttggctatgttactgctttgcttagcccctcttatagcgtt 84160 Score = 52.0 bits (26), Expect = 0.002 Identities = 45/50 (90%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 361 agcaaacctttgtttggctatgttactgc-ttgcttggcccttcttatag 409 |||||||| ||||||||||||||||| || |||||| |||| |||||||| Sbjct: 100649 agcaaaccgttgtttggctatgttaccgctttgcttagcccctcttatag 100698 Score = 40.1 bits (20), Expect = 7.5 Identities = 47/56 (83%) Strand = Plus / Plus Query: 149 gtgaggattcattcaactacgtcagtttgtctacttcacggattcgttcttcttcc 204 |||||||||| ||| ||||||| ||||| || |||| ||| ||||||||||||| Sbjct: 79967 gtgaggattcgttcggctacgtccgtttgccttcttcttggactcgttcttcttcc 80022
>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome condensation factor (CCF), putative resistance protein (RGA-2), putative resistance protein (RGA2) and putative nodulin-like-like protein (NLL) gene, complete cds; and retrotransposons Josephine, Angela-2, Angela-4, Heidi, Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5, Barbara, Isabelle, Erika-2, and Claudia Length = 211009 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 149 gtgaggattcattcaactacgtcagtttgtctacttcacggattcgttcttcttccatgc 208 |||||||| | ||| |||||||| |||||||||||||| ||| ||||||||||||| ||| Sbjct: 194973 gtgaggatccgttcgactacgtccgtttgtctacttcatggactcgttcttcttccttgc 194914 Query: 209 tggat 213 |||| Sbjct: 194913 gggat 194909 Score = 50.1 bits (25), Expect = 0.008 Identities = 115/142 (80%), Gaps = 6/142 (4%) Strand = Plus / Minus Query: 274 gttctatcgctatgtctcgctatctaccacctgttatgtcaagcctccctacatttccat 333 |||||||||||||||| |||| ||||||| |||||| ||| ||||| | | ||| |||| Sbjct: 194851 gttctatcgctatgtcaagctacctaccacttgttatatcatgcctctc-atattgccat 194793 Query: 334 gaaaagcctctaacccctccacatccgagcaaacctttgtttggctatgttactgc--tt 391 | ||| ||||||||| | ||| |||||||| ||||||||||||||||| || || Sbjct: 194792 gtcaagtctctaacccacct---tcctagcaaaccgttgtttggctatgttaccgctttt 194736 Query: 392 gcttggcccttcttatagcgtt 413 ||| |||| |||||||||||| Sbjct: 194735 gctcagcccctcttatagcgtt 194714 Score = 46.1 bits (23), Expect = 0.12 Identities = 45/51 (88%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 361 agcaaacctttgtttggctatgttactgc-ttgcttggcccttcttatagc 410 |||||||| ||| ||||||||||||| || ||||| |||||||||||||| Sbjct: 126876 agcaaaccattgattggctatgttaccgctttgctcagcccttcttatagc 126826 Score = 46.1 bits (23), Expect = 0.12 Identities = 45/51 (88%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 361 agcaaacctttgtttggctatgttactgc-ttgcttggcccttcttatagc 410 |||||||| ||| ||||||||||||| || ||||| |||||||||||||| Sbjct: 105777 agcaaaccattgattggctatgttaccgctttgctcagcccttcttatagc 105727
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence Length = 190469 Score = 61.9 bits (31), Expect = 2e-06 Identities = 71/83 (85%), Gaps = 1/83 (1%) Strand = Plus / Minus Query: 149 gtgaggattcattcaactacgtcagtttgtctacttcacggattcgttcttcttccatgc 208 |||||||||| ||| ||||| || |||||||| ||||| ||| ||||||||||||| ||| Sbjct: 1220 gtgaggattcgttcgactacatctgtttgtcttcttcatggactcgttcttcttccttgc 1161 Query: 209 tggatc-caggcaatatgatcat 230 ||||| | ||||| |||||||| Sbjct: 1160 gggatctcgggcaagatgatcat 1138 Score = 52.0 bits (26), Expect = 0.002 Identities = 48/54 (88%), Gaps = 1/54 (1%) Strand = Plus / Minus Query: 361 agcaaacctttgtttggctatgttactgc-ttgcttggcccttcttatagcgtt 413 |||||||| ||||||||||||||||| || ||||| |||| |||||||||||| Sbjct: 1007 agcaaaccgttgtttggctatgttaccgctttgctcagcccctcttatagcgtt 954 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Minus Query: 491 atgcacctatatactttgtaaaaagtggaaggcttggcctt 531 |||||||||||||||| ||||| |||||||||| |||||| Sbjct: 8460 atgcacctatatacttggtaaagggtggaaggctcggcctt 8420 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Minus Query: 491 atgcacctatatactttgtaaaaagtggaaggcttggcctt 531 |||||||||||||||| ||||| |||||||||| |||||| Sbjct: 870 atgcacctatatacttggtaaagggtggaaggctcggcctt 830 Score = 44.1 bits (22), Expect = 0.48 Identities = 55/66 (83%) Strand = Plus / Minus Query: 149 gtgaggattcattcaactacgtcagtttgtctacttcacggattcgttcttcttccatgc 208 |||||||||| ||| ||||| || | ||||| ||||| ||| ||||||||||||| ||| Sbjct: 8810 gtgaggattcgttcgactacatccgcttgtcctcttcatggactcgttcttcttccttgc 8751 Query: 209 tggatc 214 ||||| Sbjct: 8750 aggatc 8745 Score = 44.1 bits (22), Expect = 0.48 Identities = 47/54 (87%), Gaps = 1/54 (1%) Strand = Plus / Minus Query: 361 agcaaacctttgtttggctatgttactgc-ttgcttggcccttcttatagcgtt 413 |||||| | ||||||||||||||||| || ||||| |||| |||||||||||| Sbjct: 8597 agcaaatcgttgtttggctatgttaccgctttgctcagcccctcttatagcgtt 8544 Score = 42.1 bits (21), Expect = 1.9 Identities = 56/65 (86%), Gaps = 2/65 (3%) Strand = Plus / Minus Query: 361 agcaaacctttgtttggctatgttactgc-ttgct-tggcccttcttatagcgtttccag 418 |||||||| ||| ||||||||||||| || ||||| | |||||||||||||||| | || Sbjct: 126460 agcaaaccgttgattggctatgttaccgctttgctcagccccttcttatagcgttgctag 126401 Query: 419 ttgca 423 ||||| Sbjct: 126400 ttgca 126396
>gb|DQ267106.1| Triticum urartu clone BAC 210J24 chromosome 4A, complete sequence Length = 111912 Score = 56.0 bits (28), Expect = 1e-04 Identities = 56/64 (87%), Gaps = 1/64 (1%) Strand = Plus / Minus Query: 361 agcaaacctttgtttggctatgttactgc-ttgcttggcccttcttatagcgtttccagt 419 |||||||| ||||||||||||||||| || ||||| |||| |||||||||||| | ||| Sbjct: 28551 agcaaaccgttgtttggctatgttaccgctttgctcagcccctcttatagcgttgctagt 28492 Query: 420 tgca 423 |||| Sbjct: 28491 tgca 28488
>gb|AY375391.1| Triticum monococcum clone pTm4-P1 A-genome repetitive DNA sequence Length = 3244 Score = 52.0 bits (26), Expect = 0.002 Identities = 48/54 (88%), Gaps = 1/54 (1%) Strand = Plus / Plus Query: 361 agcaaacctttgtttggctatgttactgc-ttgcttggcccttcttatagcgtt 413 |||||||| ||||||||||||||||| || ||||| |||| |||||||||||| Sbjct: 1141 agcaaaccgttgtttggctatgttaccgctttgctcagcccctcttatagcgtt 1194 Score = 42.1 bits (21), Expect = 1.9 Identities = 42/49 (85%) Strand = Plus / Plus Query: 165 ctacgtcagtttgtctacttcacggattcgttcttcttccatgctggat 213 ||||||| |||||||| ||||| || ||||||||||||| ||| |||| Sbjct: 945 ctacgtccgtttgtcttcttcatgggctcgttcttcttccttgcgggat 993
>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence Length = 307015 Score = 52.0 bits (26), Expect = 0.002 Identities = 48/54 (88%), Gaps = 1/54 (1%) Strand = Plus / Plus Query: 361 agcaaacctttgtttggctatgttactgc-ttgcttggcccttcttatagcgtt 413 |||||||| ||| ||||||||||||| || ||||| ||||||||||||||||| Sbjct: 283321 agcaaaccgttgattggctatgttaccgctttgctcagcccttcttatagcgtt 283374 Score = 52.0 bits (26), Expect = 0.002 Identities = 48/54 (88%), Gaps = 1/54 (1%) Strand = Plus / Plus Query: 361 agcaaacctttgtttggctatgttactgc-ttgcttggcccttcttatagcgtt 413 |||||||| ||| ||||||||||||| || ||||| ||||||||||||||||| Sbjct: 273807 agcaaaccgttgattggctatgttaccgctttgctcagcccttcttatagcgtt 273860 Score = 48.1 bits (24), Expect = 0.031 Identities = 55/64 (85%), Gaps = 1/64 (1%) Strand = Plus / Minus Query: 361 agcaaacctttgtttggctatgttactgc-ttgcttggcccttcttatagcgtttccagt 419 |||||||| ||| ||||||||||||| || ||||| |||| |||||||||||| | ||| Sbjct: 4288 agcaaaccattgattggctatgttaccgctttgctcagcccctcttatagcgttgctagt 4229 Query: 420 tgca 423 |||| Sbjct: 4228 tgca 4225
>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence Length = 133625 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Minus Query: 165 ctacgtcagtttgtctacttcacggattcgttcttcttccatgctggat 213 ||||||| |||||||| ||||| ||| ||||||||||||| ||| |||| Sbjct: 85855 ctacgtccgtttgtcttcttcatggactcgttcttcttccttgcgggat 85807 Score = 46.1 bits (23), Expect = 0.12 Identities = 45/51 (88%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 364 aaacctttgtttggctatgttactgc-ttgcttggcccttcttatagcgtt 413 ||||| ||||||||||||||||| || ||||| |||| |||||||||||| Sbjct: 85657 aaaccgttgtttggctatgttaccgctttgctcagcccctcttatagcgtt 85607
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 48.1 bits (24), Expect = 0.031 Identities = 55/64 (85%), Gaps = 1/64 (1%) Strand = Plus / Plus Query: 361 agcaaacctttgtttggctatgttactgc-ttgcttggcccttcttatagcgtttccagt 419 |||||||| ||| ||||||||||||| || ||||| |||| |||||||||||| | ||| Sbjct: 108867 agcaaaccgttgattggctatgttaccgctttgctcagcccctcttatagcgttgctagt 108926 Query: 420 tgca 423 |||| Sbjct: 108927 tgca 108930 Score = 44.1 bits (22), Expect = 0.48 Identities = 47/54 (87%), Gaps = 1/54 (1%) Strand = Plus / Minus Query: 361 agcaaacctttgtttggctatgttactgc-ttgcttggcccttcttatagcgtt 413 |||||||| ||| ||||||||||||| || ||||| |||| |||||||||||| Sbjct: 152474 agcaaaccgttgattggctatgttaccgctttgctcagcccctcttatagcgtt 152421 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Plus Query: 497 ctatatactttgtaaaaagtggaaggcttggcct 530 |||||||||| ||||| |||||||||||||||| Sbjct: 65603 ctatatacttggtaaagggtggaaggcttggcct 65636 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Plus Query: 497 ctatatactttgtaaaaagtggaaggcttggcct 530 |||||||||| ||||| |||||||||||||||| Sbjct: 47110 ctatatacttggtaaagggtggaaggcttggcct 47143 Score = 42.1 bits (21), Expect = 1.9 Identities = 56/65 (86%), Gaps = 2/65 (3%) Strand = Plus / Plus Query: 361 agcaaacctttgtttggctatgttactgc-ttgct-tggcccttcttatagcgtttccag 418 |||||||| ||| ||||||||||||| || ||||| | |||||||||||||||| | || Sbjct: 65456 agcaaaccattgattggctatgttaccgctttgctcagccccttcttatagcgttgctag 65515 Query: 419 ttgca 423 ||||| Sbjct: 65516 ttgca 65520 Score = 42.1 bits (21), Expect = 1.9 Identities = 56/65 (86%), Gaps = 2/65 (3%) Strand = Plus / Plus Query: 361 agcaaacctttgtttggctatgttactgc-ttgct-tggcccttcttatagcgtttccag 418 |||||||| ||| ||||||||||||| || ||||| | |||||||||||||||| | || Sbjct: 46963 agcaaaccgttgattggctatgttaccgctttgctcagccccttcttatagcgttgctag 47022 Query: 419 ttgca 423 ||||| Sbjct: 47023 ttgca 47027
>gb|AF029897.1|AF029897 Triticum aestivum acetyl-coenzyme A carboxylase (Acc-1,1) gene, nuclear gene encoding plastid protein, partial cds Length = 9285 Score = 48.1 bits (24), Expect = 0.031 Identities = 55/64 (85%), Gaps = 1/64 (1%) Strand = Plus / Plus Query: 361 agcaaacctttgtttggctatgttactgc-ttgcttggcccttcttatagcgtttccagt 419 |||||||| ||||||||||||||||| || ||||| |||| ||||||||| || | ||| Sbjct: 1130 agcaaaccgttgtttggctatgttaccgctttgctcagcccctcttatagcattgctagt 1189 Query: 420 tgca 423 |||| Sbjct: 1190 tgca 1193
>emb|AL445588.12| Human DNA sequence from clone RP11-522H16 on chromosome 13, complete sequence Length = 174591 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 459 gatatatcacaatattatttct 480 |||||||||||||||||||||| Sbjct: 51658 gatatatcacaatattatttct 51679
>emb|BX927211.4| Zebrafish DNA sequence from clone CH211-112A3, complete sequence Length = 65572 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 471 tattatttctatttaatttcat 492 |||||||||||||||||||||| Sbjct: 22373 tattatttctatttaatttcat 22352
>emb|CT025649.7| Mouse DNA sequence from clone RP24-345B5 on chromosome 14, complete sequence Length = 175794 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 356 atccgagcaaacctttgtttg 376 ||||||||||||||||||||| Sbjct: 67050 atccgagcaaacctttgtttg 67030
>gb|AC126551.3| Mus musculus BAC clone RP24-505C20 from chromosome 12, complete sequence Length = 151373 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 tatcattgctatgctagttgt 269 ||||||||||||||||||||| Sbjct: 11786 tatcattgctatgctagttgt 11766
>gb|AC124542.4| Mus musculus BAC clone RP23-259B10 from 12, complete sequence Length = 179046 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 tatcattgctatgctagttgt 269 ||||||||||||||||||||| Sbjct: 150607 tatcattgctatgctagttgt 150587
>emb|AL139120.6| Human DNA sequence from clone RP11-25C19 on chromosome 10 Contains the 3' end of the VTI1A gene for vesicle transport through interaction with t-SNAREs homolog 1A (yeast), a novel gene and the 5' end of a novel gene, complete sequence Length = 169775 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 437 ccatatgaaacatggatttct 457 ||||||||||||||||||||| Sbjct: 31884 ccatatgaaacatggatttct 31864
>gb|AC154612.2| Mus musculus BAC clone RP23-338A21 from chromosome 14, complete sequence Length = 197282 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 356 atccgagcaaacctttgtttg 376 ||||||||||||||||||||| Sbjct: 134551 atccgagcaaacctttgtttg 134531
>gb|AC159260.3| Mus musculus BAC clone RP24-85M18 from chromosome 3, complete sequence Length = 208348 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 gaaaagcctctaacccctcc 353 |||||||||||||||||||| Sbjct: 117119 gaaaagcctctaacccctcc 117100
>gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome Length = 1111496 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 452 atttcttgatatatcacaatattatttctatt 483 |||||| ||||||||||||||| |||| |||| Sbjct: 889072 atttctggatatatcacaatatcatttatatt 889103
>ref|XM_958486.1| Neurospora crassa OR74A related to integral membrane protein pth11 [MIPS] (NCU08718.1) partial mRNA Length = 1233 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 tggcccttcttatagcgttt 414 |||||||||||||||||||| Sbjct: 230 tggcccttcttatagcgttt 249
>ref|XM_330834.1| Neurospora crassa OR74A related to integral membrane protein pth11 [MIPS] (NCU08718.1) partial mRNA Length = 1233 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 tggcccttcttatagcgttt 414 |||||||||||||||||||| Sbjct: 230 tggcccttcttatagcgttt 249
>gb|AC108409.8| Mus musculus chromosome 19, clone RP23-84G7, complete sequence Length = 270854 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 tatataccagtactatcatt 255 |||||||||||||||||||| Sbjct: 112105 tatataccagtactatcatt 112124
>emb|AL356969.12| Human DNA sequence from clone RP11-411F9 on chromosome 6, complete sequence Length = 169184 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 467 acaatattatttctatttaa 486 |||||||||||||||||||| Sbjct: 157992 acaatattatttctatttaa 158011
>emb|AL132996.4|HSDJ45N11 Human DNA sequence from clone RP1-45N11 on chromosome 6q15-16.1, complete sequence Length = 99025 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 244 agtactatcattgctatgctagtt 267 |||||||| ||||||||||||||| Sbjct: 53529 agtactattattgctatgctagtt 53552
>emb|AL031321.1|HS496N17 Human DNA sequence from clone RP3-496N17 on chromosome 6p11.2-12.3 Contains the 3' end of the BAG2 gene for BCL2-associated athanogene 2 and the RAB23 gene for a RAS oncogene, complete sequence Length = 72614 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 473 ttatttctatttaatttcat 492 |||||||||||||||||||| Sbjct: 19075 ttatttctatttaatttcat 19094
>emb|AL031599.1|HS15D23 Human DNA sequence from clone RP1-15D23 on chromosome 1q24-25 Contains the TNFSF18 gene for tumor necrosis factor (ligand) superfamily member 18, complete sequence Length = 163136 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 452 atttcttgatatatcacaatatta 475 |||||||| ||||||||||||||| Sbjct: 127191 atttcttgctatatcacaatatta 127214
>emb|AL021331.1|HS366N23 Human DNA sequence from clone RP3-366N23 on chromosome 6q27 Contains the UNC93A gene for unc-93 homolog A (C. elegans), the gene for NYD-TSPG protein, a Mitotic Feedback Control Protein MADP2 Homolog LIKE pseudogene and the 3' end of the TCP10 gene for t-complex 10 (mouse), complete sequence Length = 98517 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 atttcatgcacctatatact 505 |||||||||||||||||||| Sbjct: 24223 atttcatgcacctatatact 24204
>gb|AC000030.5| Homo sapiens Chromosome 12 Cosmid Clone c200f3, complete sequence Length = 35014 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 acaatattatttctatttaa 486 |||||||||||||||||||| Sbjct: 20334 acaatattatttctatttaa 20315
>gb|AC078991.21| Homo sapiens Xp BAC RP11-459A10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169819 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 atattatttctatttaattt 489 |||||||||||||||||||| Sbjct: 136712 atattatttctatttaattt 136731
>emb|AL929555.20| Mouse DNA sequence from clone RP24-427F7 on chromosome 2, complete sequence Length = 155137 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 caatattatttctatttaat 487 |||||||||||||||||||| Sbjct: 106843 caatattatttctatttaat 106862
>gb|AC007372.4|AC007372 Homo sapiens chromosome 14 BAC containing gene for type 2 iodothyronine deiodinase (DIO2) gene, complete CDS, complete sequence Length = 154796 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 atcatttccctatataccag 245 |||||||||||||||||||| Sbjct: 40200 atcatttccctatataccag 40219
>emb|AL049837.4|CNS0000F Human chromosome 14 DNA sequence BAC R-959A22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 168677 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 atcatttccctatataccag 245 |||||||||||||||||||| Sbjct: 134951 atcatttccctatataccag 134932
>emb|AL844197.6| Zebrafish DNA sequence from clone DKEY-156L9 in linkage group 10, complete sequence Length = 184895 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 473 ttatttctatttaatttcat 492 |||||||||||||||||||| Sbjct: 6503 ttatttctatttaatttcat 6522
>gb|L04661.1|RIRCSLPT Rickettsia typhi crystalline surface layer protein (slpT) gene,complete cds Length = 5258 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 452 atttcttgatatatcacaatattatttctatt 483 |||||| ||||||||||||||| |||| |||| Sbjct: 4840 atttctggatatatcacaatatcatttatatt 4809
>gb|AC144914.18| Mus musculus chromosome 5, clone RP24-210D14, complete sequence Length = 159643 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 atatatcacaatattatttc 479 |||||||||||||||||||| Sbjct: 124408 atatatcacaatattatttc 124427 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,057,152 Number of Sequences: 3902068 Number of extensions: 5057152 Number of successful extensions: 106769 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 106532 Number of HSP's gapped (non-prelim): 187 length of query: 551 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 528 effective length of database: 17,143,297,704 effective search space: 9051661187712 effective search space used: 9051661187712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
