ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baalo08 |
|---|---|
| Clone Library Name | barley_pub |
>STAR7_MOUSE (Q8R1R3) StAR-related lipid transfer protein 7 (StARD7) (START| domain-containing protein 7) Length = 295 Score = 53.5 bits (127), Expect = 3e-07 Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 4/129 (3%) Frame = +1 Query: 145 YQAWKREPENGPP--QYRSSTIFEDASPXXXXXXXXXXXXXIKNTWDDMLLKHETLEECT 318 ++ W+R P G QYR + D +P K WD +++K E +E Sbjct: 75 FKLWRR-PITGTHLYQYRVFGTYTDVTPRQFFNVQLDTEYRKK--WDALVIKLEVIERDA 131 Query: 319 ETGTMVVRWVRKFPFFCSDREYVIGRR--IWASGKTYYCVTKSVPRPSVPRCSKPRRVDL 492 +G+ V+ WV FP+ R+YV RR + V+++V PSVP + RV Sbjct: 132 VSGSEVLHWVTHFPYPMYSRDYVYVRRYSVDQENNVMVLVSRAVEHPSVPESPEFVRVRS 191 Query: 493 YYSSWCIRP 519 Y S IRP Sbjct: 192 YESQMVIRP 200
>STAR7_HUMAN (Q9NQZ5) StAR-related lipid transfer protein 7 (StARD7) (START| domain-containing protein 7) (Protein GTT1) Length = 295 Score = 53.1 bits (126), Expect = 4e-07 Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 4/129 (3%) Frame = +1 Query: 145 YQAWKREPENGPP--QYRSSTIFEDASPXXXXXXXXXXXXXIKNTWDDMLLKHETLEECT 318 ++ W+R P G QYR + D +P K WD +++K E +E Sbjct: 75 FKLWRR-PITGTHLYQYRVFGTYTDVTPRQFFNVQLDTEYRKK--WDALVIKLEVIERDV 131 Query: 319 ETGTMVVRWVRKFPFFCSDREYVIGRR--IWASGKTYYCVTKSVPRPSVPRCSKPRRVDL 492 +G+ V+ WV FP+ R+YV RR + V+++V PSVP + RV Sbjct: 132 VSGSEVLHWVTHFPYPMYSRDYVYVRRYSVDQENNMMVLVSRAVEHPSVPESPEFVRVRS 191 Query: 493 YYSSWCIRP 519 Y S IRP Sbjct: 192 YESQMVIRP 200
>PPCT_RAT (P53809) Phosphatidylcholine transfer protein (PC-TP) (StAR-related| lipid transfer protein 2) (StARD2) (START domain-containing protein 2) Length = 214 Score = 34.7 bits (78), Expect = 0.16 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 4/87 (4%) Frame = +1 Query: 265 KNTWDDMLLKHETLEECTETGTMVVRWVRKFPFFCSDREYVIGRR---IWASG-KTYYCV 432 + WD + + L E + G MV W K+PF S+R+YV R+ + G K Y + Sbjct: 78 RKKWDQYV---KELYEKSFDGQMVAYWEVKYPFPLSNRDYVYTRQRRDLDVDGRKIYVVL 134 Query: 433 TKSVPRPSVPRCSKPRRVDLYYSSWCI 513 +++ P P S RV Y S I Sbjct: 135 AQNISVPQFPEKSGVIRVKQYKQSLAI 161
>PPCT_HUMAN (Q9UKL6) Phosphatidylcholine transfer protein (PC-TP) (StAR-related| lipid transfer protein 2) (StARD2) (START domain-containing protein 2) Length = 214 Score = 33.9 bits (76), Expect = 0.28 Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 4/121 (3%) Frame = +1 Query: 163 EPENGPPQYRSSTIFEDASPXXXXXXXXXXXXXIKNTWDDMLLKHETLEECTETGTMVVR 342 + + G +Y+ + ED SP + WD + K +EC G VV Sbjct: 46 DKKTGLYEYKVFGVLEDCSPTLLADIYMDSDY--RKQWDQYV-KELYEQECN--GETVVY 100 Query: 343 WVRKFPFFCSDREYVIGRR----IWASGKTYYCVTKSVPRPSVPRCSKPRRVDLYYSSWC 510 W K+PF S+R+YV R+ K + + +S P + S RV Y S Sbjct: 101 WEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLA 160 Query: 511 I 513 I Sbjct: 161 I 161
>SYI_LEIXX (Q6AFZ0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1119 Score = 28.5 bits (62), Expect(2) = 0.52 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = +3 Query: 78 VEEKDGGPAWXAHDGPHLAN 137 ++ +DG P W +DGP AN Sbjct: 68 IDNRDGAPEWVFYDGPPFAN 87 Score = 23.1 bits (48), Expect(2) = 0.52 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +1 Query: 40 RQHPGTSCTSAGSSRRRTAAP 102 RQ P +SC +A ++RR P Sbjct: 7 RQRPASSCRTAKTARREMPYP 27
>PPCT_MOUSE (P53808) Phosphatidylcholine transfer protein (PC-TP) (StAR-related| lipid transfer protein 2) (StARD2) (START domain-containing protein 2) Length = 214 Score = 32.7 bits (73), Expect = 0.62 Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 4/118 (3%) Frame = +1 Query: 172 NGPPQYRSSTIFEDASPXXXXXXXXXXXXXIKNTWDDMLLKHETLEECTETGTMVVRWVR 351 +G +Y+ + E SP + WD + + L E MV W Sbjct: 49 SGLYEYKVFGVLEGCSPALLTDVYMDLDY--RKQWDQYV---KELYEKESDEQMVAYWEV 103 Query: 352 KFPFFCSDREYVIGRR----IWASGKTYYCVTKSVPRPSVPRCSKPRRVDLYYSSWCI 513 K+PF S+R+YV R+ K Y + +S+ P P S RV Y S I Sbjct: 104 KYPFPLSNRDYVYTRQRRDLDVDRRKIYVVLAQSISAPQFPEKSGVIRVKQYKQSLAI 161
>PPCT_BOVIN (P02720) Phosphatidylcholine transfer protein (PC-TP) (StAR-related| lipid transfer protein 2) (StARD2) (START domain-containing protein 2) Length = 213 Score = 32.7 bits (73), Expect = 0.62 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 4/115 (3%) Frame = +1 Query: 163 EPENGPPQYRSSTIFEDASPXXXXXXXXXXXXXIKNTWDDMLLKHETLEECTETGTMVVR 342 + + G Y+ + ED P + WD + K +EC+ G VV Sbjct: 46 DQQTGLYAYKVFGVLEDCLPDLLADVYMDLAY--RKQWDQYV-KELYEKECS--GETVVY 100 Query: 343 WVRKFPFFCSDREYVIGRR----IWASGKTYYCVTKSVPRPSVPRCSKPRRVDLY 495 W K+PF S+R+YV R+ + K + + +S P P S RV Y Sbjct: 101 WQVKYPFPMSNRDYVYVRQRQELDFEGQKVHVILAQSTSEPQFPEKSGVIRVKHY 155
>SUSY_SOYBN (P13708) Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase) (Nodulin-100) Length = 805 Score = 32.0 bits (71), Expect = 1.1 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 2/87 (2%) Frame = -2 Query: 396 ATDDILPVAAEEWKLPDPANNHRSSLCALLQRLVLKKHVVPGVLDPEVIVPE--EIPDDI 223 ATD + V + +L + +R+ + ALL R+ K G+L ++ E EIP++ Sbjct: 2 ATDRLTRVHSLRERLDETLTANRNEILALLSRIEAKGK---GILQHHQVIAEFEEIPEEN 58 Query: 222 RRRVFEDGAAAVLRRAVLGFSLPCLVA 142 R+++ + VLR LP VA Sbjct: 59 RQKLTDGAFGEVLRSTQEAIVLPPWVA 85
>SUSY_MEDSA (O65026) Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase) Length = 805 Score = 32.0 bits (71), Expect = 1.1 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%) Frame = -2 Query: 396 ATDDILPVAAEEWKLPDPANNHRSSLCALLQRLVLKKHVVPGVLDPEVIVPE--EIPDDI 223 AT+ + V + + +L + +R+ + ALL RL K G+L ++ E EIP++ Sbjct: 2 ATERLTRVHSLKERLDETLTANRNEILALLSRLEAKGK---GILQHHQVIAEFEEIPEES 58 Query: 222 RRRVFEDGAAAVLRRAVLGFSLPCLVA 142 R+++ + VLR LP VA Sbjct: 59 RQKLTDGAFGEVLRSTQEAIVLPPWVA 85
>SUSY_PHAAU (Q01390) Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase) Length = 805 Score = 31.6 bits (70), Expect = 1.4 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%) Frame = -2 Query: 396 ATDDILPVAAEEWKLPDPANNHRSSLCALLQRLVLKKHVVPGVLDPEVIVPE--EIPDDI 223 ATD + V + +L + + +R+ + ALL R+ K G+L ++ E EIP++ Sbjct: 2 ATDRLTRVHSLRERLDETLSANRNEILALLSRIEGKGK---GILQHHQVIAEFEEIPEES 58 Query: 222 RRRVFEDGAAAVLRRAVLGFSLPCLVA 142 R+++ + VLR LP VA Sbjct: 59 RQKLTDGAFGEVLRSTQEAIVLPPWVA 85
>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 504 Score = 31.2 bits (69), Expect = 1.8 Identities = 19/80 (23%), Positives = 35/80 (43%) Frame = -2 Query: 405 PYPATDDILPVAAEEWKLPDPANNHRSSLCALLQRLVLKKHVVPGVLDPEVIVPEEIPDD 226 P+P D+ +P+ + PD L K + DP ++PEE ++ Sbjct: 173 PFPDPDNFMPIPQSPIRPPDD----------------LSKVRIADTEDPNAVIPEEEAEE 216 Query: 225 IRRRVFEDGAAAVLRRAVLG 166 +RRR + A++ L ++G Sbjct: 217 LRRRT--EAASSALTLEMIG 234
>SUSY_VICFA (P31926) Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase) Length = 806 Score = 30.4 bits (67), Expect = 3.1 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%) Frame = -2 Query: 396 ATDDILPVAAEEWKLPDPANNHRSSLCALLQRLVLKKHVVPGVLDPEVIVPE--EIPDDI 223 AT+ + V + +L + +R+ + ALL R+ K G+L ++ E EIP++ Sbjct: 2 ATERLTRVHSLRERLDETLTANRNEILALLSRIEAKGK---GILQHHQVIAEFEEIPEEN 58 Query: 222 RRRVFEDGAAAVLRRAVLGFSLPCLVA 142 R+++ + VLR LP VA Sbjct: 59 RQKLTDGAFGEVLRSTQEAIVLPPWVA 85
>RL14_BUCAI (P57581) 50S ribosomal protein L14| Length = 122 Score = 30.4 bits (67), Expect = 3.1 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -2 Query: 459 NRGARHALCNAVVGLSRCPYPATDDILPVAAEE 361 N GAR A+C V+G SR Y A D++ + +E Sbjct: 13 NSGARSAMCIKVLGGSRRRYAAIGDVIKITIKE 45
>SYH_GLOVI (Q7NHH9) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 467 Score = 30.0 bits (66), Expect = 4.0 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 5/55 (9%) Frame = -1 Query: 193 CGTAAGRSRVLSSMPGSGMLA---RCGPSCAXHAGPPSFSST--TLRRCMRXRGV 44 CGT+ G R+L++M G+ A R G H G P S L R +R GV Sbjct: 341 CGTSFGLDRILAAMDQLGLFASLRRAGEVLVLHFGDPGVSQVCFELVRGLREAGV 395
>GP123_HUMAN (Q86SQ6) Probable G-protein coupled receptor 123| Length = 1280 Score = 25.4 bits (54), Expect(2) = 4.9 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Frame = +1 Query: 49 PGTS-CTSAGSSRRRTAAPHGTHMMDRTLPTFRYQAWKREPE 171 P TS C GSS R+ P H+ R +FR A+ R E Sbjct: 626 PDTSLCRKEGSSASRSCRPGPGHLTRREEDSFRQLAFPRFEE 667 Score = 22.7 bits (47), Expect(2) = 4.9 Identities = 8/15 (53%), Positives = 9/15 (60%) Frame = +3 Query: 6 RFLSRRRTMNWPSTP 50 RFLS+ WP TP Sbjct: 594 RFLSQSELQTWPRTP 608
>TRBM_SAISC (Q71U07) Thrombomodulin precursor (TM) (CD141 antigen)| Length = 575 Score = 29.6 bits (65), Expect = 5.3 Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 6/45 (13%) Frame = -2 Query: 510 APARVVEVHTARFA-APW-----NRGARHALCNAVVGLSRCPYPA 394 AP V+ H AR A W N G HA CNA+ G RC PA Sbjct: 226 APPGAVQGHWAREAPGAWDCSVENGGCEHA-CNAIPGAPRCQCPA 269
>TRBM_HUMAN (P07204) Thrombomodulin precursor (TM) (Fetomodulin) (CD141| antigen) Length = 575 Score = 29.6 bits (65), Expect = 5.3 Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 6/45 (13%) Frame = -2 Query: 510 APARVVEVHTARFA-APW-----NRGARHALCNAVVGLSRCPYPA 394 AP V+ H AR A W N G HA CNA+ G RC PA Sbjct: 226 APPGAVQGHWAREAPGAWDCSVENGGCEHA-CNAIPGAPRCQCPA 269
>FM30A_HUMAN (Q9NZY2) Protein FAM30A| Length = 154 Score = 29.3 bits (64), Expect = 6.9 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Frame = +3 Query: 93 GGPAWXAHDGPHLANIPLPGMEERTRERPAAVPQQH-HLRRRVAGC 227 GG A GP L N G R+RERP+ + H H R GC Sbjct: 7 GGEAQPGDTGPILPNGDTSGAALRSRERPSWPQETHGHRERTEEGC 52
>SYI_THEFY (Q47QV9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1060 Score = 28.9 bits (63), Expect = 9.0 Identities = 15/49 (30%), Positives = 20/49 (40%) Frame = +3 Query: 72 RVVEEKDGGPAWXAHDGPHLANIPLPGMEERTRERPAAVPQQHHLRRRV 218 R +E+ GGP W ++GP AN P HH+ RV Sbjct: 37 RSLEQTQGGPTWVFYEGPPTAN---------------GTPGVHHVEARV 70
>RL14_BUCBP (Q89A76) 50S ribosomal protein L14| Length = 122 Score = 28.9 bits (63), Expect = 9.0 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -2 Query: 459 NRGARHALCNAVVGLSRCPYPATDDILPVAAEE 361 N GAR A+C V+G SR Y DI+ ++ +E Sbjct: 13 NSGARLAMCIKVLGGSRRRYAGIGDIIKISIKE 45
>RL14_BUCAP (Q8K960) 50S ribosomal protein L14| Length = 122 Score = 28.9 bits (63), Expect = 9.0 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -2 Query: 459 NRGARHALCNAVVGLSRCPYPATDDILPVAAEE 361 N GAR A+C V+G SR Y DI+ + +E Sbjct: 13 NSGARSAMCIKVLGGSRRRYARIGDIIKITIKE 45
>Y068_CHLMU (Q9PLN1) Hypothetical protein TC0068| Length = 392 Score = 28.9 bits (63), Expect = 9.0 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = -2 Query: 243 EEIPDDIRRRVFEDGAAAVLRRAVLGF 163 EE+PD +R RV ED A+ ++ +L F Sbjct: 166 EEVPDSLRGRVEEDAASQMIVEVLLSF 192
>DIOXL_ARATH (Q949R4) 4,5-DOPA dioxygenase extradiol-like protein| Length = 269 Score = 28.9 bits (63), Expect = 9.0 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 7/56 (12%) Frame = +3 Query: 342 LGQEVSILLQRQGVCHRSQ-------DMGIWKDLLLRYKERASPLCSKVQQTSPCG 488 LG+ V LL ++G R D G W L+L Y E P+C Q++ G Sbjct: 90 LGKRVKELLMKEGGMKRVDEDTKRGLDHGAWVPLMLMYPEADIPICQLSVQSNQNG 145
>CSKI2_MOUSE (Q8VHK1) Caskin-2| Length = 1201 Score = 28.9 bits (63), Expect = 9.0 Identities = 16/41 (39%), Positives = 18/41 (43%) Frame = -1 Query: 190 GTAAGRSRVLSSMPGSGMLARCGPSCAXHAGPPSFSSTTLR 68 G+A G L+ PG LAR PS G P S LR Sbjct: 819 GSALGSYATLTRRPGRSTLARTSPSLTPTRGTPRSQSFALR 859 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,567,044 Number of Sequences: 219361 Number of extensions: 1734831 Number of successful extensions: 5293 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 5065 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5283 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
