ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baaln24 |
|---|---|
| Clone Library Name | barley_pub |
>CTTB2_CALMO (Q2QLB3) Cortactin-binding protein 2 (CortBP2)| Length = 1663 Score = 34.3 bits (77), Expect = 0.29 Identities = 16/30 (53%), Positives = 17/30 (56%) Frame = +2 Query: 119 PPMPWADPAGSVGTHPSLRRPWADPAGSAR 208 PP P A P G VGTHPS+ R G AR Sbjct: 507 PPRPGAPPTGDVGTHPSVGRTSVKTHGVAR 536
>TO203_ARATH (P82874) Mitochondrial import receptor subunit TOM20-3 (Translocase| of outer membrane 20 kDa subunit 3) Length = 202 Score = 32.3 bits (72), Expect = 1.1 Identities = 14/49 (28%), Positives = 22/49 (44%) Frame = -3 Query: 418 LAGEPISSGHVPLTPASHLVPVSTSKQASKHTVGWIIVEASLHIWIDFS 272 L +P+ P P+S V S A +GW+I+ + WI F+ Sbjct: 144 LGSQPMGRVEAPAPPSSKAVKNKKSSDAKYDAMGWVILAIGVVAWISFA 192
>CTTB2_CALJA (Q2QLF8) Cortactin-binding protein 2 (CortBP2)| Length = 1662 Score = 32.0 bits (71), Expect = 1.4 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = +2 Query: 119 PPMPWADPAGSVGTHPSLRRPWADPAGSAR 208 PP P A P G V THPS+ R G AR Sbjct: 506 PPRPGAPPTGDVSTHPSVGRTSVKTHGIAR 535
>FUT7_MOUSE (Q11131) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 7) (FUCT-VII) Length = 389 Score = 30.8 bits (68), Expect = 3.2 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Frame = +2 Query: 83 WRPEEAAMMGAQPPMPWADPAGSVGTHPSLR-RPWADPAGSA 205 W + A + P PWA+P G HP+ R R W AG A Sbjct: 29 WESRKEATCNSSSPGPWAEPTVQ-GYHPTRRLRAWGGLAGGA 69
>KDSA_VIBPA (Q87RN0) 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55)| (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) Length = 283 Score = 30.8 bits (68), Expect = 3.2 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = -1 Query: 216 STDLADPAGSAHGRRREGWVPTDPAGSAHGIGG 118 S + DP+G+A G RRE V AG A GI G Sbjct: 203 SLQMRDPSGAASGGRREQTVELAKAGLATGIAG 235
>KDSA_VIBCH (Q9KQ29) 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55)| (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) Length = 283 Score = 30.8 bits (68), Expect = 3.2 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = -1 Query: 216 STDLADPAGSAHGRRREGWVPTDPAGSAHGIGG 118 S + DP+G+A G RRE V AG A GI G Sbjct: 203 SLQMRDPSGAASGGRREQTVELAKAGLATGIAG 235
>KDSA_VIBVY (Q7MMY2) 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55)| (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) Length = 284 Score = 30.8 bits (68), Expect = 3.2 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = -1 Query: 216 STDLADPAGSAHGRRREGWVPTDPAGSAHGIGG 118 S + DP+G+A G RRE V AG A GI G Sbjct: 204 SLQMRDPSGAASGGRREQTVELAKAGLATGIAG 236
>KDSA_VIBVU (Q8DFG3) 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55)| (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) Length = 284 Score = 30.8 bits (68), Expect = 3.2 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = -1 Query: 216 STDLADPAGSAHGRRREGWVPTDPAGSAHGIGG 118 S + DP+G+A G RRE V AG A GI G Sbjct: 204 SLQMRDPSGAASGGRREQTVELAKAGLATGIAG 236
>CBPA_DICDI (P35085) Calcium-binding protein| Length = 467 Score = 30.4 bits (67), Expect = 4.2 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +2 Query: 89 PEEAAMMGAQPPMPWADPAGSVGTHPSLRRPWADP 193 P++ A G QPPM P G G +P +P A P Sbjct: 224 PQQGAYPGQQPPMGAYPPQGQPGAYPPQGQPGAYP 258
>MYS2_DICDI (P08799) Myosin-2 heavy chain, non muscle (Myosin II heavy chain,| non muscle) Length = 2116 Score = 30.4 bits (67), Expect = 4.2 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -3 Query: 343 KQASKHTVGWIIVEASLHIWIDF-SWILVDDEDWWLLAQQA 224 KQA +HTV I++ +L +IDF SW WW L +A Sbjct: 783 KQAREHTVAARIIQQNLRAYIDFKSW------PWWKLFSKA 817
>KLHL6_MOUSE (Q6V595) Kelch-like protein 6| Length = 610 Score = 30.0 bits (66), Expect = 5.5 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = -2 Query: 563 LN*KNCIGIQLCIYTCQLDSIRVGTDMCRIVRYVHLHHGKE 441 LN +NCIGI T LDS+++ C I +V + + +E Sbjct: 158 LNPENCIGILRLADTHSLDSLKMQVQSCIIQNFVQILNSEE 198
>CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor| Length = 1775 Score = 29.3 bits (64), Expect = 9.4 Identities = 33/129 (25%), Positives = 40/129 (31%), Gaps = 25/129 (19%) Frame = -1 Query: 318 DGLLWKLAYTYGSISRGF*LMTRTGGS*RSRPAW----STDLADPAGSAHGRRREGWVPT 151 D WK A T GSI R + P + S D+ D AG A G Sbjct: 22 DAQFWKTAGTAGSIQDSVKHYNR------NEPKFPIDDSYDIVDSAGVARG-------DL 68 Query: 150 DPAGSAHGIGGCAPIMAASSG---------------------LHEPDGDEGMVPGPGLHQ 34 P G GC P A G + P GD+G PG + Sbjct: 69 PPKNCTAGYAGCVPKCIAEKGNRGLPGPLGPTGLKGEMGFPGMEGPSGDKGQKGDPGPYG 128 Query: 33 RPTDKAVSG 7 + DK G Sbjct: 129 QRGDKGERG 137 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,875,032 Number of Sequences: 219361 Number of extensions: 2070046 Number of successful extensions: 5607 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 5290 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5606 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
