ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baaln23 |
|---|---|
| Clone Library Name | barley_pub |
>JAD1A_HUMAN (P29375) Jumonji/ARID domain-containing protein 1A| (Retinoblastoma-binding protein 2) (RBBP-2) Length = 1722 Score = 41.6 bits (96), Expect = 0.002 Identities = 34/102 (33%), Positives = 46/102 (45%) Frame = +1 Query: 157 DFLKDVMQFLIQRGHHRLVPHGGLAEFPDAVLNAKRLDLYNLYKEVVSRGGFYVGNGINW 336 DFL + +F +G +P V+ K LDLY L K V S+GGF + Sbjct: 89 DFLDQLAKFWELQGSTLKIP----------VVERKILDLYALSKIVASKGGFEMVT---- 134 Query: 337 KGQVFSKMRNHTVTNRMTGVGNTLKRHYETYLLEYELSHDDV 462 K + +SK+ + G G+ LK HYE L YEL V Sbjct: 135 KEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYELFQSGV 176
>ATX3_ARATH (Q9M364) Histone-lysine N-methyltransferase ATX3 (EC 2.1.1.43)| (Trithorax-homolog protein 3) (TRX-homolog protein 3) (Protein SET DOMAIN GROUP 14) Length = 902 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/56 (33%), Positives = 25/56 (44%) Frame = +1 Query: 466 GECCLLCHSSAPGDWVNCGLCGEWAHFGCDRRQGLGTFKDYAKTDGLEYICPHCSI 633 G C + H S GDWV C C W H CD T + + + + Y CP C + Sbjct: 352 GICKRIWHPSDDGDWVCCDGCDVWVHAECDNI----TNERFKELEHNNYYCPDCKV 403
>ATX5_ARATH (Q8GZ42) Histone-lysine N-methyltransferase ATX5 (EC 2.1.1.43)| (Trithorax-homolog protein 5) (TRX-homolog protein 5) (Protein SET DOMAIN GROUP 29) Length = 1043 Score = 35.0 bits (79), Expect = 0.19 Identities = 20/56 (35%), Positives = 24/56 (42%) Frame = +1 Query: 460 VDGECCLLCHSSAPGDWVNCGLCGEWAHFGCDRRQGLGTFKDYAKTDGLEYICPHC 627 V G C + + WV C C W H CD+ FKD +TD Y CP C Sbjct: 415 VCGICKRIWNHLDSQSWVRCDGCKVWIHSACDQISH-KHFKDLGETD---YYCPTC 466
>DRI_DROME (Q24573) Protein dead ringer (Protein retained)| Length = 911 Score = 35.0 bits (79), Expect = 0.19 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 1/98 (1%) Frame = +1 Query: 154 EDFLKDVMQFLIQRGHHRLVPHGGLAEFPDAVLNAKRLDLYNLYKEVVSRGGFY-VGNGI 330 ++FL D+ F+ +RG P L +VL DLY LY V++RGG V N Sbjct: 297 KEFLDDLFSFMQKRG----TPINRLPIMAKSVL-----DLYELYNLVIARGGLVDVINKK 347 Query: 331 NWKGQVFSKMRNHTVTNRMTGVGNTLKRHYETYLLEYE 444 W+ ++ + + +T TL+ Y YL YE Sbjct: 348 LWQ----EIIKGLHLPSSITSAAFTLRTQYMKYLYPYE 381
>ARID2_HUMAN (Q68CP9) AT-rich interactive domain-containing protein 2 (ARID| domain-containing protein 2) (BRG1-associated factor 200) (BAF200) Length = 1835 Score = 33.9 bits (76), Expect = 0.42 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 1/99 (1%) Frame = +1 Query: 160 FLKDVMQFLIQRGH-HRLVPHGGLAEFPDAVLNAKRLDLYNLYKEVVSRGGFYVGNGINW 336 FL ++ QF RG + +P G K LDL+ LY V + GGF + N Sbjct: 19 FLDELRQFHHSRGSPFKKIPAVG----------GKELDLHGLYTRVTTLGGFAKVSEKNQ 68 Query: 337 KGQVFSKMRNHTVTNRMTGVGNTLKRHYETYLLEYELSH 453 G++ + + LK++Y YL +YE H Sbjct: 69 WGEI---VEEFNFPRSCSNAAFALKQYYLRYLEKYEKVH 104
>FILA_HUMAN (P20930) Filaggrin| Length = 4061 Score = 33.9 bits (76), Expect = 0.42 Identities = 18/37 (48%), Positives = 20/37 (54%) Frame = -2 Query: 199 GPSELKIASHPSKSPPQSTLG*ATDHTHVSSLEEDSA 89 G S ASH SP QS A +H H SSL +DSA Sbjct: 3903 GSSHRDTASHVQSSPVQSDSSTAKEHGHFSSLSQDSA 3939
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 32.0 bits (71), Expect = 1.6 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%) Frame = +1 Query: 250 LNAKRLDLYNLYKEVVSRGGFYVGNGINWKGQVFSKMRNHTVTNRMTGVGNTLKRHYETY 429 ++ + LDLY LY V RGGF K + + + + TL++HY Sbjct: 1027 ISKQPLDLYRLYIYVKERGGFVEVT----KSKTWKDIAGLLGIGASSSAAYTLRKHYTKN 1082 Query: 430 LLEYELSHD--DVD 465 LL +E D D+D Sbjct: 1083 LLTFECHFDRGDID 1096
>MSC1_SCHPO (Q9UT79) Multicopy suppressor of chk1 protein 1| Length = 1588 Score = 31.6 bits (70), Expect = 2.1 Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 2/95 (2%) Frame = +1 Query: 349 FSKMRNHTVTNRMTGVGNTLKRHY--ETYLLEYELSHDDVDGECCLLCHSSAPGDWVNCG 522 F + RN TN M G+ H E Y++ D D C C G + C Sbjct: 1136 FVEQRN---TNAMVDEGSDAPFHVGNEYYVIA---GSDPSDFHYCF-CRQPEAGMMIECE 1188 Query: 523 LCGEWAHFGCDRRQGLGTFKDYAKTDGLEYICPHC 627 LC EW H C + K + D ++ICP C Sbjct: 1189 LCHEWYHAKCMKMS-----KKKLRADE-KFICPIC 1217
>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3| homolog (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) (Homologous to ALR protein) Length = 4911 Score = 31.2 bits (69), Expect = 2.7 Identities = 15/52 (28%), Positives = 21/52 (40%) Frame = +1 Query: 472 CCLLCHSSAPGDWVNCGLCGEWAHFGCDRRQGLGTFKDYAKTDGLEYICPHC 627 C H D ++C +C W H CD+ T + EYIC +C Sbjct: 470 CGKCYHPELQKDMLHCNMCKRWVHLECDK----PTDHELDTQLKEEYICMYC 517
>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3| homolog (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) Length = 4903 Score = 31.2 bits (69), Expect = 2.7 Identities = 14/52 (26%), Positives = 22/52 (42%) Frame = +1 Query: 472 CCLLCHSSAPGDWVNCGLCGEWAHFGCDRRQGLGTFKDYAKTDGLEYICPHC 627 C H D ++C +C W H CD+ T ++ +YIC +C Sbjct: 469 CGKCYHPELQKDMLHCNMCKRWVHLECDK----PTDQELDSQLKEDYICMYC 516
>RUVB_VIBCH (Q9KR02) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 334 Score = 30.8 bits (68), Expect = 3.6 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Frame = +1 Query: 118 GCDRLPIQVCSEEDFLKDVMQ-FLIQRGHHRLVPHGGLA 231 G D L + E+D ++DV++ FLIQ+G+ + P G +A Sbjct: 284 GIDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGRIA 322
>GLND_RHOS4 (Q3J5H6) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 930 Score = 30.8 bits (68), Expect = 3.6 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = +1 Query: 232 EFPDAVLNAKRLDLYNLYKEVVSRGGFYVGNGI--NWKGQVFSKMRNHTVT 378 +F AV + KRLDL + RG VG G NWK Q+ K+ TVT Sbjct: 612 DFAKAVRSKKRLDLLTVLTVCDIRG---VGPGTWNNWKAQLLRKLYRDTVT 659
>RIR1_AQUAE (O66503) Ribonucleoside-diphosphate reductase alpha subunit (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 801 Score = 30.4 bits (67), Expect = 4.6 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = +1 Query: 166 KDVMQFLIQRGHHRLVPHGGLAEFPDAVLNAKRLDLYNLYKEVVSRGGF 312 K++ Q LI+ ++ AE PD A RL LY+LYK+V G+ Sbjct: 53 KEIQQLLIKTAAEKVS-----AERPDWTYTAARLLLYDLYKDVAHLRGY 96
>JAD1D_PANTR (Q5XUN4) Jumonji/ARID domain-containing protein 1D (SmcY protein)| Length = 1535 Score = 30.0 bits (66), Expect = 6.1 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = +1 Query: 259 KRLDLYNLYKEVVSRGGFYVGNGINWKGQVFSKMRNHTVTNRMTGVGNTLKRHYETYLLE 438 K LDLY+L K V+ GG+ K + ++++ +G+ L+ HYE + Sbjct: 108 KILDLYSLSKIVIEEGGYEA----ICKDRRWARVAQRLHYPPGKNIGSLLRSHYERIIYP 163 Query: 439 YEL 447 YE+ Sbjct: 164 YEM 166
>JAD1D_MOUSE (Q62240) Jumonji/ARID domain-containing protein 1D (SmcY protein)| (Histocompatibility Y antigen) (H-Y) Length = 1548 Score = 30.0 bits (66), Expect = 6.1 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +1 Query: 259 KRLDLYNLYKEVVSRGGF-YVGNGINWKGQVFSKMRNHTVTNRMTGVGNTLKRHYETYLL 435 K LDLY+L K V+ GG+ + W +V ++ + N +G+ L+ HYE + Sbjct: 108 KILDLYSLNKIVMEEGGYEAICKDRRW-ARVAQRLNYPSGKN----IGSLLRSHYERIIY 162 Query: 436 EYEL 447 YE+ Sbjct: 163 PYEI 166
>JAD1D_HUMAN (Q9BY66) Jumonji/ARID domain-containing protein 1D (SmcY protein)| (Histocompatibility Y antigen) (H-Y) Length = 1539 Score = 30.0 bits (66), Expect = 6.1 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = +1 Query: 259 KRLDLYNLYKEVVSRGGFYVGNGINWKGQVFSKMRNHTVTNRMTGVGNTLKRHYETYLLE 438 K LDLY+L K V+ GG+ K + ++++ +G+ L+ HYE + Sbjct: 108 KILDLYSLSKIVIEEGGYEA----ICKDRRWARVAQRLHYPPGKNIGSLLRSHYERIIYP 163 Query: 439 YEL 447 YE+ Sbjct: 164 YEM 166
>ORB2_DROME (Q9VSR3) Probable RNA-binding protein orb2| Length = 704 Score = 29.6 bits (65), Expect = 7.9 Identities = 15/30 (50%), Positives = 20/30 (66%) Frame = -1 Query: 608 SNPSVFA*SLKVPSPCRLSQPK*AHSPHKP 519 ++PSV+ +LK+ SP RLS HSPH P Sbjct: 404 NDPSVYLNALKMGSPSRLS----PHSPHSP 429
>DIDO1_MOUSE (Q8C9B9) Death-inducer obliterator 1 (DIO-1) (Death-associated| transcription factor 1) (DATF-1) (Fragments) Length = 1956 Score = 29.6 bits (65), Expect = 7.9 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 4/98 (4%) Frame = +1 Query: 352 SKMRNHTVTNRMTGV---GNTLKRHYETYLLEYELSHDDVDGECCLLCHSSAPGDWVNCG 522 S+ + N++ G GNT + E + E D + C+ + C Sbjct: 224 SQSETDDIENQLEGKATQGNTEENPREAGKPKPECEVYDPNALYCICRQPHNNRFMICCD 283 Query: 523 LCGEWAHFGCDRRQGLGTFKD-YAKTDGLEYICPHCSI 633 C EW H C G+ + + +G +YICP+C+I Sbjct: 284 RCEEWFHGDC---VGISEARGRLLERNGEDYICPNCTI 318
>GRC3_ASHGO (Q753Y3) Protein GRC3| Length = 633 Score = 29.6 bits (65), Expect = 7.9 Identities = 20/70 (28%), Positives = 30/70 (42%) Frame = -2 Query: 361 ASLKRLGPSSLYHCPHKSHPWTPPLCTSYRDQGVLH*GLHQEIQLDLHEERVDGGPSELK 182 A L RL S Y P S +PPL S+ QG++ Q+ H++ + Sbjct: 452 AHLHRLSEQSYYPGPLLS---SPPLQVSFGSQGIMAFRFLQDPSSGYHQDDISAALQGCV 508 Query: 181 IASHPSKSPP 152 + + SK PP Sbjct: 509 VCLYHSKMPP 518 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,441,099 Number of Sequences: 219361 Number of extensions: 1990643 Number of successful extensions: 5436 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5229 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5430 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5995743495 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
