Clone Name | baaln21 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK120554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130M21, full insert sequence Length = 2056 Score = 553 bits (279), Expect = e-154 Identities = 482/547 (88%), Gaps = 2/547 (0%) Strand = Plus / Plus Query: 24 ctgctcttcgtctggcccgacgagnaacggctgggnacaaggccaaggcgaccaaacctc 83 ||||||||||| |||||||||||| || || |||| | ||||||| ||| ||||| |||| Sbjct: 849 ctgctcttcgtgtggcccgacgag-aatgggtggg-agaaggccacggctaccaagcctc 906 Query: 84 caatgttgccgaaagagttcgatgacccggccttctccacggtgacgatccagagggacc 143 | ||||| ||||| ||||| || || || || |||||||||||||| ||||||||||| | Sbjct: 907 cgatgttaccgaaggagtttgaggatcctgcgttctccacggtgaccatccagagggatc 966 Query: 144 tcttctatgggtatgacaccttgatggagaacgtctctgatccctcgcacatagaatttg 203 | | |||||| ||||| || ||||||||||||||||||||||| ||||| |||||||||| Sbjct: 967 tgtactatggctatgatacattgatggagaacgtctctgatccgtcgcatatagaatttg 1026 Query: 204 ctcaccacaaggtcactgggcgaagagatagagccaagcctttgccgttcaaaatggaat 263 ||||||||||||||||||| ||||||||| |||||| ||||||||| ||||| ||||||| Sbjct: 1027 ctcaccacaaggtcactggtcgaagagatcgagccaggcctttgccattcaagatggaat 1086 Query: 264 caagcggcgcatggggatattcaggggcaaataccggtaaccctcgcatcactgcaactt 323 |||| || |||||||||||||||||| ||||| | || ||||||||||||| |||||||| Sbjct: 1087 caagtggtgcatggggatattcagggtcaaattctggaaaccctcgcatcagtgcaactt 1146 Query: 324 tcgaggccccttgctatgcactgaacaagatagagatcgacactaaattacccattgtgg 383 | | |||||||||||||||||||||||| || ||||| ||||| || ||||||||| | | Sbjct: 1147 ttgtggccccttgctatgcactgaacaaaattgagatagacacaaagttacccatttttg 1206 Query: 384 gagatcagaaatgggtgatatggatttgctccttcaacattcccatggccccagggaaaa 443 |||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| | Sbjct: 1207 gagatcagaaatgggtcatatggatttgctctttcaacattccaatggccccagggaaga 1266 Query: 444 ctcgttcgattgtctgcagcgctcgaaactttttccagtttaccatgccaggaaaggcat 503 ||||||| || || || || ||||| |||||||||||||||| |||||||||||| |||| Sbjct: 1267 ctcgttctatagtttgtagtgctcggaactttttccagtttagcatgccaggaaaagcat 1326 Query: 504 ggtggcagcttgtccctcgatggtacgaacactggacctcgaatttggtctacgatggtg 563 ||||||||||||||||||||||||| || || ||||| || ||||||||||| ||||||| Sbjct: 1327 ggtggcagcttgtccctcgatggtatgagcattggacttcaaatttggtctatgatggtg 1386 Query: 564 atatgat 570 ||||||| Sbjct: 1387 atatgat 1393
>gb|U77345.1|ZMU77345 Zea mays lethal leaf-spot 1 (lls1) mRNA, partial cds Length = 1683 Score = 549 bits (277), Expect = e-153 Identities = 451/509 (88%) Strand = Plus / Plus Query: 74 accaaacctccaatgttgccgaaagagttcgatgacccggccttctccacggtgacgatc 133 ||||| |||||||||||||||||||| || || ||||||||||||||||||||||| ||| Sbjct: 434 accaagcctccaatgttgccgaaagaatttgaggacccggccttctccacggtgacaatc 493 Query: 134 cagagggacctcttctatgggtatgacaccttgatggagaacgtctctgatccctcgcac 193 ||||||||| | |||||||| ||||| || ||||||||||||||||||||||| || || Sbjct: 494 cagagggacttgttctatggttatgatacgttgatggagaacgtctctgatccgtcccat 553 Query: 194 atagaatttgctcaccacaaggtcactgggcgaagagatagagccaagcctttgccgttc 253 ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| | ||| Sbjct: 554 atagaatttgctcaccacaaggttactggacgaagagatagagccaggcctttgacattc 613 Query: 254 aaaatggaatcaagcggcgcatggggatattcaggggcaaataccggtaaccctcgcatc 313 | ||||||||||| || || ||||| || ||||| |||||| | ||||| |||||||| Sbjct: 614 aggatggaatcaagtggtgcctggggttactcaggagcaaattctggtaatcctcgcatt 673 Query: 314 actgcaactttcgaggccccttgctatgcactgaacaagatagagatcgacactaaatta 373 ||||||||||| ||||||||||| |||||| ||||||| |||||||| ||||| || ||| Sbjct: 674 actgcaacttttgaggccccttgttatgcattgaacaaaatagagatagacacaaagtta 733 Query: 374 cccattgtgggagatcagaaatgggtgatatggatttgctccttcaacattcccatggcc 433 |||||| | || || ||||||||||| |||||||||||||| ||||||||||| |||||| Sbjct: 734 cccatttttggcgaccagaaatgggtcatatggatttgctctttcaacattccaatggcc 793 Query: 434 ccagggaaaactcgttcgattgtctgcagcgctcgaaactttttccagtttaccatgcca 493 |||||||| |||||||| |||||||| ||||||||||||||||||||||| || |||||| Sbjct: 794 ccagggaagactcgttctattgtctgtagcgctcgaaactttttccagttcacaatgcca 853 Query: 494 ggaaaggcatggtggcagcttgtccctcgatggtacgaacactggacctcgaatttggtc 553 ||||| ||||||||||||||||| ||||||||||| ||||| ||||| || ||||||||| Sbjct: 854 ggaaaagcatggtggcagcttgttcctcgatggtatgaacattggacttcaaatttggtc 913 Query: 554 tacgatggtgatatgatcgtgcttcaagg 582 || ||||| ||||||||||| |||||||| Sbjct: 914 tatgatggcgatatgatcgttcttcaagg 942 Score = 40.1 bits (20), Expect = 7.9 Identities = 39/44 (88%), Gaps = 1/44 (2%) Strand = Plus / Plus Query: 1 ttccccacgctcctctcccaggc-ctgctcttcgtctggcccga 43 |||||||| ||| ||||||||| ||||||||||| |||||||| Sbjct: 362 ttccccaccctcgtctcccaggggctgctcttcgtgtggcccga 405
>dbj|AK111974.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-D01, full insert sequence Length = 2098 Score = 545 bits (275), Expect = e-152 Identities = 481/547 (87%), Gaps = 2/547 (0%) Strand = Plus / Plus Query: 24 ctgctcttcgtctggcccgacgagnaacggctgggnacaaggccaaggcgaccaaacctc 83 ||||||||||| |||||||||||| || || |||| | ||||||| ||| ||||| |||| Sbjct: 892 ctgctcttcgtgtggcccgacgag-aatgggtggg-agaaggccacggctaccaagcctc 949 Query: 84 caatgttgccgaaagagttcgatgacccggccttctccacggtgacgatccagagggacc 143 | ||||| ||||| ||||| || || || || |||||||||||||| ||||||||||| | Sbjct: 950 cgatgttaccgaaggagtttgaggatcctgcgttctccacggtgaccatccagagggatc 1009 Query: 144 tcttctatgggtatgacaccttgatggagaacgtctctgatccctcgcacatagaatttg 203 | | |||||| ||||| || ||||||||||||||||||||||| ||||| |||||||||| Sbjct: 1010 tgtactatggctatgatacattgatggagaacgtctctgatccgtcgcatatagaatttg 1069 Query: 204 ctcaccacaaggtcactgggcgaagagatagagccaagcctttgccgttcaaaatggaat 263 ||||||||||||||||||| ||||||||| |||||| ||||||||| ||||| ||||||| Sbjct: 1070 ctcaccacaaggtcactggtcgaagagatcgagccaggcctttgccattcaagatggaat 1129 Query: 264 caagcggcgcatggggatattcaggggcaaataccggtaaccctcgcatcactgcaactt 323 |||| || |||||||||||||||||| ||||| | || ||||||||||||| |||||||| Sbjct: 1130 caagtggtgcatggggatattcagggtcaaattctggaaaccctcgcatcagtgcaactt 1189 Query: 324 tcgaggccccttgctatgcactgaacaagatagagatcgacactaaattacccattgtgg 383 | | |||||||||||||||||||||||| || ||||| ||||| || ||||||||| | | Sbjct: 1190 ttgtggccccttgctatgcactgaacaaaattgagatagacacaaagttacccatttttg 1249 Query: 384 gagatcagaaatgggtgatatggatttgctccttcaacattcccatggccccagggaaaa 443 |||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| | Sbjct: 1250 gagatcagaaatgggtcatatggatttgctctttcaacattccaatggccccagggaaga 1309 Query: 444 ctcgttcgattgtctgcagcgctcgaaactttttccagtttaccatgccaggaaaggcat 503 ||||||| || || || || ||||| ||||||||||||||| |||||||||||| |||| Sbjct: 1310 ctcgttctatagtttgtagtgctcgggactttttccagtttagcatgccaggaaaagcat 1369 Query: 504 ggtggcagcttgtccctcgatggtacgaacactggacctcgaatttggtctacgatggtg 563 ||||||||||||||||||||||||| || || ||||| || ||||||||||| ||||||| Sbjct: 1370 ggtggcagcttgtccctcgatggtatgagcattggacttcaaatttggtctatgatggtg 1429 Query: 564 atatgat 570 ||||||| Sbjct: 1430 atatgat 1436
>ref|XM_470215.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1548 Score = 521 bits (263), Expect = e-145 Identities = 407/455 (89%) Strand = Plus / Plus Query: 116 ttctccacggtgacgatccagagggacctcttctatgggtatgacaccttgatggagaac 175 |||||||||||||| ||||||||||| || | |||||| ||||| || |||||||||||| Sbjct: 619 ttctccacggtgaccatccagagggatctgtactatggctatgatacattgatggagaac 678 Query: 176 gtctctgatccctcgcacatagaatttgctcaccacaaggtcactgggcgaagagataga 235 ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| || Sbjct: 679 gtctctgatccgtcgcatatagaatttgctcaccacaaggtcactggtcgaagagatcga 738 Query: 236 gccaagcctttgccgttcaaaatggaatcaagcggcgcatggggatattcaggggcaaat 295 |||| ||||||||| ||||| ||||||||||| || |||||||||||||||||| ||||| Sbjct: 739 gccaggcctttgccattcaagatggaatcaagtggtgcatggggatattcagggtcaaat 798 Query: 296 accggtaaccctcgcatcactgcaactttcgaggccccttgctatgcactgaacaagata 355 | || ||||||||||||| ||||||||| | |||||||||||||||||||||||| || Sbjct: 799 tctggaaaccctcgcatcagtgcaacttttgtggccccttgctatgcactgaacaaaatt 858 Query: 356 gagatcgacactaaattacccattgtgggagatcagaaatgggtgatatggatttgctcc 415 ||||| ||||| || ||||||||| | ||||||||||||||||| |||||||||||||| Sbjct: 859 gagatagacacaaagttacccatttttggagatcagaaatgggtcatatggatttgctct 918 Query: 416 ttcaacattcccatggccccagggaaaactcgttcgattgtctgcagcgctcgaaacttt 475 ||||||||||| |||||||||||||| |||||||| || || || || ||||| |||||| Sbjct: 919 ttcaacattccaatggccccagggaagactcgttctatagtttgtagtgctcggaacttt 978 Query: 476 ttccagtttaccatgccaggaaaggcatggtggcagcttgtccctcgatggtacgaacac 535 |||||||||| |||||||||||| ||||||||||||||||||||||||||||| || || Sbjct: 979 ttccagtttagcatgccaggaaaagcatggtggcagcttgtccctcgatggtatgagcat 1038 Query: 536 tggacctcgaatttggtctacgatggtgatatgat 570 ||||| || ||||||||||| |||||||||||||| Sbjct: 1039 tggacttcaaatttggtctatgatggtgatatgat 1073 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 ctgctcttcgtctggcccgacgag 47 ||||||||||| |||||||||||| Sbjct: 562 ctgctcttcgtgtggcccgacgag 585
>gb|AY110853.1| Zea mays CL10_1 mRNA sequence Length = 2131 Score = 505 bits (255), Expect = e-140 Identities = 443/509 (87%) Strand = Plus / Plus Query: 74 accaaacctccaatgttgccgaaagagttcgatgacccggccttctccacggtgacgatc 133 ||||| |||||||||||||||||||| || || ||||||||||||||||||||||| ||| Sbjct: 881 accaagcctccaatgttgccgaaagaatttgaggacccggccttctccacggtgacaatc 940 Query: 134 cagagggacctcttctatgggtatgacaccttgatggagaacgtctctgatccctcgcac 193 ||||||||| | |||||||| ||||| || ||||||||||||||||||||||| || || Sbjct: 941 cagagggacttgttctatggttatgatacgttgatggagaacgtctctgatccgtcccat 1000 Query: 194 atagaatttgctcaccacaaggtcactgggcgaagagatagagccaagcctttgccgttc 253 ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| | ||| Sbjct: 1001 atagaatttgctcaccacaaggttactggacgaagagatagagccaggcctttgacattc 1060 Query: 254 aaaatggaatcaagcggcgcatggggatattcaggggcaaataccggtaaccctcgcatc 313 | ||||||||||| || || ||||| || ||||| |||||| | ||||| |||||||| Sbjct: 1061 aggatggaatcaagtggtgcctggggttactcaggagcaaattctggtaatcctcgcatt 1120 Query: 314 actgcaactttcgaggccccttgctatgcactgaacaagatagagatcgacactaaatta 373 ||||||||||| ||||||||||| |||||| ||||||| |||||||| ||||| || ||| Sbjct: 1121 actgcaacttttgaggccccttgttatgcattgaacaaaatagagatagacacaaagtta 1180 Query: 374 cccattgtgggagatcagaaatgggtgatatggatttgctccttcaacattcccatggcc 433 |||| || || ||||||||||| |||||||||||||| ||||||||||| |||||| Sbjct: 1181 cccannnnnggcgaccagaaatgggtcatatggatttgctctttcaacattccaatggcc 1240 Query: 434 ccagggaaaactcgttcgattgtctgcagcgctcgaaactttttccagtttaccatgcca 493 |||||||| |||||||| |||||||| |||||||||||| |||||| || |||||| Sbjct: 1241 ccagggaagactcgttctattgtctgtagcgctcgaaacnnnnnccagttcacaatgcca 1300 Query: 494 ggaaaggcatggtggcagcttgtccctcgatggtacgaacactggacctcgaatttggtc 553 ||||| ||||||||||||||||| ||||||||||| ||||| ||||| || ||||||||| Sbjct: 1301 ggaaaagcatggtggcagcttgttcctcgatggtatgaacattggacttcaaatttggtc 1360 Query: 554 tacgatggtgatatgatcgtgcttcaagg 582 || ||||| ||||||||||| |||||||| Sbjct: 1361 tatgatggcgatatgatcgttcttcaagg 1389 Score = 40.1 bits (20), Expect = 7.9 Identities = 39/44 (88%), Gaps = 1/44 (2%) Strand = Plus / Plus Query: 1 ttccccacgctcctctcccaggc-ctgctcttcgtctggcccga 43 |||||||| ||| ||||||||| ||||||||||| |||||||| Sbjct: 809 ttccccaccctcgtctcccaggggctgctcttcgtgtggcccga 852
>gb|U77346.1|ZMU77346 Zea mays lethal leaf-spot 1 (lls-1) gene, partial cds; and unknown gene Length = 7129 Score = 188 bits (95), Expect = 1e-44 Identities = 143/159 (89%) Strand = Plus / Plus Query: 353 atagagatcgacactaaattacccattgtgggagatcagaaatgggtgatatggatttgc 412 |||||||| ||||| || ||||||||| | || || ||||||||||| |||||||||||| Sbjct: 5730 atagagatagacacaaagttacccatttttggcgaccagaaatgggtcatatggatttgc 5789 Query: 413 tccttcaacattcccatggccccagggaaaactcgttcgattgtctgcagcgctcgaaac 472 || ||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||| Sbjct: 5790 tctttcaacattccaatggccccagggaagactcgttctattgtctgtagcgctcgaaac 5849 Query: 473 tttttccagtttaccatgccaggaaaggcatggtggcag 511 ||||||||||| || ||||||||||| |||||||||||| Sbjct: 5850 tttttccagttcacaatgccaggaaaagcatggtggcag 5888 Score = 161 bits (81), Expect = 3e-36 Identities = 117/129 (90%) Strand = Plus / Plus Query: 88 gttgccgaaagagttcgatgacccggccttctccacggtgacgatccagagggacctctt 147 |||||||||||| || || ||||||||||||||||||||||| |||||||||||| | || Sbjct: 4178 gttgccgaaagaatttgaggacccggccttctccacggtgacaatccagagggacttgtt 4237 Query: 148 ctatgggtatgacaccttgatggagaacgtctctgatccctcgcacatagaatttgctca 207 |||||| ||||| || ||||||||||||||||||||||| || || |||||||||||||| Sbjct: 4238 ctatggttatgatacgttgatggagaacgtctctgatccgtcccatatagaatttgctca 4297 Query: 208 ccacaaggt 216 ||||||||| Sbjct: 4298 ccacaaggt 4306 Score = 111 bits (56), Expect = 3e-21 Identities = 119/140 (85%) Strand = Plus / Plus Query: 213 aggtcactgggcgaagagatagagccaagcctttgccgttcaaaatggaatcaagcggcg 272 |||| ||||| |||||||||||||||| ||||||| | |||| ||||||||||| || | Sbjct: 5478 aggttactggacgaagagatagagccaggcctttgacattcaggatggaatcaagtggtg 5537 Query: 273 catggggatattcaggggcaaataccggtaaccctcgcatcactgcaactttcgaggccc 332 | ||||| || ||||| |||||| | ||||| |||||||| ||||||||||| ||||||| Sbjct: 5538 cctggggttactcaggagcaaattctggtaatcctcgcattactgcaacttttgaggccc 5597 Query: 333 cttgctatgcactgaacaag 352 |||| |||||| | |||||| Sbjct: 5598 cttgttatgcattaaacaag 5617 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 510 agcttgtccctcgatggtacgaacactggacctcgaatttggtctacgatggtgatatga 569 ||||||| ||||||||||| ||||| ||||| || ||||||||||| ||||| ||||||| Sbjct: 6117 agcttgttcctcgatggtatgaacattggacttcaaatttggtctatgatggcgatatga 6176 Query: 570 tcgtgcttcaagg 582 |||| |||||||| Sbjct: 6177 tcgttcttcaagg 6189 Score = 40.1 bits (20), Expect = 7.9 Identities = 39/44 (88%), Gaps = 1/44 (2%) Strand = Plus / Plus Query: 1 ttccccacgctcctctcccaggc-ctgctcttcgtctggcccga 43 |||||||| ||| ||||||||| ||||||||||| |||||||| Sbjct: 4004 ttccccaccctcgtctcccaggggctgctcttcgtgtggcccga 4047
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 174 bits (88), Expect = 2e-40 Identities = 139/156 (89%) Strand = Plus / Plus Query: 356 gagatcgacactaaattacccattgtgggagatcagaaatgggtgatatggatttgctcc 415 ||||| ||||| || ||||||||| | ||||||||||||||||| |||||||||||||| Sbjct: 2560361 gagatagacacaaagttacccatttttggagatcagaaatgggtcatatggatttgctct 2560420 Query: 416 ttcaacattcccatggccccagggaaaactcgttcgattgtctgcagcgctcgaaacttt 475 ||||||||||| |||||||||||||| |||||||| || || || || ||||| |||||| Sbjct: 2560421 ttcaacattccaatggccccagggaagactcgttctatagtttgtagtgctcggaacttt 2560480 Query: 476 ttccagtttaccatgccaggaaaggcatggtggcag 511 |||||||||| |||||||||||| |||||||||||| Sbjct: 2560481 ttccagtttagcatgccaggaaaagcatggtggcag 2560516 Score = 167 bits (84), Expect = 5e-38 Identities = 126/140 (90%) Strand = Plus / Plus Query: 213 aggtcactgggcgaagagatagagccaagcctttgccgttcaaaatggaatcaagcggcg 272 |||||||||| ||||||||| |||||| ||||||||| ||||| ||||||||||| || | Sbjct: 2560078 aggtcactggtcgaagagatcgagccaggcctttgccattcaagatggaatcaagtggtg 2560137 Query: 273 catggggatattcaggggcaaataccggtaaccctcgcatcactgcaactttcgaggccc 332 ||||||||||||||||| ||||| | || ||||||||||||| ||||||||| | ||||| Sbjct: 2560138 catggggatattcagggtcaaattctggaaaccctcgcatcagtgcaacttttgtggccc 2560197 Query: 333 cttgctatgcactgaacaag 352 |||||||||||||||||||| Sbjct: 2560198 cttgctatgcactgaacaag 2560217 Score = 129 bits (65), Expect = 1e-26 Identities = 92/101 (91%) Strand = Plus / Plus Query: 116 ttctccacggtgacgatccagagggacctcttctatgggtatgacaccttgatggagaac 175 |||||||||||||| ||||||||||| || | |||||| ||||| || |||||||||||| Sbjct: 2559455 ttctccacggtgaccatccagagggatctgtactatggctatgatacattgatggagaac 2559514 Query: 176 gtctctgatccctcgcacatagaatttgctcaccacaaggt 216 ||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 2559515 gtctctgatccgtcgcatatagaatttgctcaccacaaggt 2559555 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 508 gcagcttgtccctcgatggtacgaacactggacctcgaatttggtctacgatggtgatat 567 ||||||||||||||||||||| || || ||||| || ||||||||||| ||||||||||| Sbjct: 2560714 gcagcttgtccctcgatggtatgagcattggacttcaaatttggtctatgatggtgatat 2560773 Query: 568 gat 570 ||| Sbjct: 2560774 gat 2560776 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 ctgctcttcgtctggcccgacgag 47 ||||||||||| |||||||||||| Sbjct: 2559278 ctgctcttcgtgtggcccgacgag 2559301
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0067N01, from chromosome 3, complete sequence Length = 159636 Score = 174 bits (88), Expect = 2e-40 Identities = 139/156 (89%) Strand = Plus / Minus Query: 356 gagatcgacactaaattacccattgtgggagatcagaaatgggtgatatggatttgctcc 415 ||||| ||||| || ||||||||| | ||||||||||||||||| |||||||||||||| Sbjct: 109733 gagatagacacaaagttacccatttttggagatcagaaatgggtcatatggatttgctct 109674 Query: 416 ttcaacattcccatggccccagggaaaactcgttcgattgtctgcagcgctcgaaacttt 475 ||||||||||| |||||||||||||| |||||||| || || || || ||||| |||||| Sbjct: 109673 ttcaacattccaatggccccagggaagactcgttctatagtttgtagtgctcggaacttt 109614 Query: 476 ttccagtttaccatgccaggaaaggcatggtggcag 511 |||||||||| |||||||||||| |||||||||||| Sbjct: 109613 ttccagtttagcatgccaggaaaagcatggtggcag 109578 Score = 167 bits (84), Expect = 5e-38 Identities = 126/140 (90%) Strand = Plus / Minus Query: 213 aggtcactgggcgaagagatagagccaagcctttgccgttcaaaatggaatcaagcggcg 272 |||||||||| ||||||||| |||||| ||||||||| ||||| ||||||||||| || | Sbjct: 110016 aggtcactggtcgaagagatcgagccaggcctttgccattcaagatggaatcaagtggtg 109957 Query: 273 catggggatattcaggggcaaataccggtaaccctcgcatcactgcaactttcgaggccc 332 ||||||||||||||||| ||||| | || ||||||||||||| ||||||||| | ||||| Sbjct: 109956 catggggatattcagggtcaaattctggaaaccctcgcatcagtgcaacttttgtggccc 109897 Query: 333 cttgctatgcactgaacaag 352 |||||||||||||||||||| Sbjct: 109896 cttgctatgcactgaacaag 109877 Score = 129 bits (65), Expect = 1e-26 Identities = 92/101 (91%) Strand = Plus / Minus Query: 116 ttctccacggtgacgatccagagggacctcttctatgggtatgacaccttgatggagaac 175 |||||||||||||| ||||||||||| || | |||||| ||||| || |||||||||||| Sbjct: 110639 ttctccacggtgaccatccagagggatctgtactatggctatgatacattgatggagaac 110580 Query: 176 gtctctgatccctcgcacatagaatttgctcaccacaaggt 216 ||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 110579 gtctctgatccgtcgcatatagaatttgctcaccacaaggt 110539 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 508 gcagcttgtccctcgatggtacgaacactggacctcgaatttggtctacgatggtgatat 567 ||||||||||||||||||||| || || ||||| || ||||||||||| ||||||||||| Sbjct: 109380 gcagcttgtccctcgatggtatgagcattggacttcaaatttggtctatgatggtgatat 109321 Query: 568 gat 570 ||| Sbjct: 109320 gat 109318 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 24 ctgctcttcgtctggcccgacgag 47 ||||||||||| |||||||||||| Sbjct: 110816 ctgctcttcgtgtggcccgacgag 110793
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 174 bits (88), Expect = 2e-40 Identities = 139/156 (89%) Strand = Plus / Plus Query: 356 gagatcgacactaaattacccattgtgggagatcagaaatgggtgatatggatttgctcc 415 ||||| ||||| || ||||||||| | ||||||||||||||||| |||||||||||||| Sbjct: 2560471 gagatagacacaaagttacccatttttggagatcagaaatgggtcatatggatttgctct 2560530 Query: 416 ttcaacattcccatggccccagggaaaactcgttcgattgtctgcagcgctcgaaacttt 475 ||||||||||| |||||||||||||| |||||||| || || || || ||||| |||||| Sbjct: 2560531 ttcaacattccaatggccccagggaagactcgttctatagtttgtagtgctcggaacttt 2560590 Query: 476 ttccagtttaccatgccaggaaaggcatggtggcag 511 |||||||||| |||||||||||| |||||||||||| Sbjct: 2560591 ttccagtttagcatgccaggaaaagcatggtggcag 2560626 Score = 167 bits (84), Expect = 5e-38 Identities = 126/140 (90%) Strand = Plus / Plus Query: 213 aggtcactgggcgaagagatagagccaagcctttgccgttcaaaatggaatcaagcggcg 272 |||||||||| ||||||||| |||||| ||||||||| ||||| ||||||||||| || | Sbjct: 2560188 aggtcactggtcgaagagatcgagccaggcctttgccattcaagatggaatcaagtggtg 2560247 Query: 273 catggggatattcaggggcaaataccggtaaccctcgcatcactgcaactttcgaggccc 332 ||||||||||||||||| ||||| | || ||||||||||||| ||||||||| | ||||| Sbjct: 2560248 catggggatattcagggtcaaattctggaaaccctcgcatcagtgcaacttttgtggccc 2560307 Query: 333 cttgctatgcactgaacaag 352 |||||||||||||||||||| Sbjct: 2560308 cttgctatgcactgaacaag 2560327 Score = 129 bits (65), Expect = 1e-26 Identities = 92/101 (91%) Strand = Plus / Plus Query: 116 ttctccacggtgacgatccagagggacctcttctatgggtatgacaccttgatggagaac 175 |||||||||||||| ||||||||||| || | |||||| ||||| || |||||||||||| Sbjct: 2559565 ttctccacggtgaccatccagagggatctgtactatggctatgatacattgatggagaac 2559624 Query: 176 gtctctgatccctcgcacatagaatttgctcaccacaaggt 216 ||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 2559625 gtctctgatccgtcgcatatagaatttgctcaccacaaggt 2559665 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 508 gcagcttgtccctcgatggtacgaacactggacctcgaatttggtctacgatggtgatat 567 ||||||||||||||||||||| || || ||||| || ||||||||||| ||||||||||| Sbjct: 2560824 gcagcttgtccctcgatggtatgagcattggacttcaaatttggtctatgatggtgatat 2560883 Query: 568 gat 570 ||| Sbjct: 2560884 gat 2560886 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 ctgctcttcgtctggcccgacgag 47 ||||||||||| |||||||||||| Sbjct: 2559388 ctgctcttcgtgtggcccgacgag 2559411
>gb|AY257179.1| Vigna unguiculata lethal leaf spot 1-like protein mRNA, complete cds Length = 1849 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 167 atggagaacgtctctgatccctcgcacatagaatttgctcaccacaaggtcactgggcga 226 |||||||| ||||||||||| || ||||| || |||||||| ||||||||||| || | Sbjct: 825 atggagaatgtctctgatccttctcacattgagtttgctcatcacaaggtcacaggaagg 884 Query: 227 agagatagagccaagcctttgccgttcaaaatgga 261 ||||| |||||||||||| |||| ||||| ||||| Sbjct: 885 agagacagagccaagcctctgccattcaagatgga 919
>gb|AF321984.1|AF321984 Lycopersicon esculentum lethal leaf spot 1-like protein mRNA, complete cds Length = 1717 Score = 73.8 bits (37), Expect = 6e-10 Identities = 94/113 (83%) Strand = Plus / Plus Query: 149 tatgggtatgacaccttgatggagaacgtctctgatccctcgcacatagaatttgctcac 208 ||||| |||||||| | |||||||||||||||||||| || ||||| || ||||| ||| Sbjct: 773 tatggctatgacactctcatggagaacgtctctgatccttctcacattgattttgcacac 832 Query: 209 cacaaggtcactgggcgaagagatagagccaagcctttgccgttcaaaatgga 261 |||||||| ||||| | |||| ||||| ||||| ||||| ||||| ||||| Sbjct: 833 cacaaggttactggaaggcgagacagagcaaagcccttgccattcaagatgga 885 Score = 60.0 bits (30), Expect = 9e-06 Identities = 108/134 (80%) Strand = Plus / Plus Query: 353 atagagatcgacactaaattacccattgtgggagatcagaaatgggtgatatggatttgc 412 |||||||||||||| || | || || ||||| |||||||| ||||||||||||||||| Sbjct: 977 atagagatcgacacaaagcttccaatcgtgggtgatcagaagtgggtgatatggatttgt 1036 Query: 413 tccttcaacattcccatggccccagggaaaactcgttcgattgtctgcagcgctcgaaac 472 ||||| || | || ||||| ||||| || || | || ||||| || || ||||||||| Sbjct: 1037 tcctttaatgtacctatggcaccaggaaagaccaggtcaattgtttgtagtgctcgaaac 1096 Query: 473 tttttccagtttac 486 || | ||||||||| Sbjct: 1097 ttctcccagtttac 1110
>ref|NM_114357.4| Arabidopsis thaliana ACD1 (ACCELERATED CELL DEATH 1); oxidoreductase AT3G44880 (ACD1) mRNA, complete cds Length = 1984 Score = 71.9 bits (36), Expect = 2e-09 Identities = 156/196 (79%) Strand = Plus / Plus Query: 387 atcagaaatgggtgatatggatttgctccttcaacattcccatggccccagggaaaactc 446 |||| |||||||| || ||||||||||| ||||| || || ||||| ||||| || || | Sbjct: 1213 atcaaaaatgggtcatttggatttgctcattcaatataccaatggctccaggaaagaccc 1272 Query: 447 gttcgattgtctgcagcgctcgaaactttttccagtttaccatgccaggaaaggcatggt 506 |||| || || |||||||| || ||||| || ||||| | | |||||| || |||| Sbjct: 1273 gttccatcgtttgcagcgcccgtaacttctttcagttctctgtaccaggaccagcttggt 1332 Query: 507 ggcagcttgtccctcgatggtacgaacactggacctcgaatttggtctacgatggtgata 566 ||||| |||| || ||||||| ||||||||||| ||||| || ||||| || || || | Sbjct: 1333 ggcaggttgtaccaagatggtatgaacactggacttcgaacttagtctatgacggagaca 1392 Query: 567 tgatcgtgcttcaagg 582 ||||||| |||||||| Sbjct: 1393 tgatcgtacttcaagg 1408 Score = 67.9 bits (34), Expect = 3e-08 Identities = 109/134 (81%) Strand = Plus / Plus Query: 122 acggtgacgatccagagggacctcttctatgggtatgacaccttgatggagaacgtctct 181 |||||||| || || ||||| || |||||||| ||||| || | ||||| || || ||| Sbjct: 948 acggtgacaattcaaagggatcttttctatggatatgatactctcatggaaaatgtatct 1007 Query: 182 gatccctcgcacatagaatttgctcaccacaaggtcactgggcgaagagatagagccaag 241 ||||| || || ||||| |||||||| |||||||| || || ||||||| |||||||| Sbjct: 1008 gatccttcccatatagattttgctcatcacaaggttacaggaagaagagacagagccaaa 1067 Query: 242 cctttgccgttcaa 255 || ||||||||||| Sbjct: 1068 ccattgccgttcaa 1081
>gb|AY093092.1| Arabidopsis thaliana lethal leaf-spot 1 homolog Lls1 (At3g44880) mRNA, complete cds Length = 1737 Score = 71.9 bits (36), Expect = 2e-09 Identities = 156/196 (79%) Strand = Plus / Plus Query: 387 atcagaaatgggtgatatggatttgctccttcaacattcccatggccccagggaaaactc 446 |||| |||||||| || ||||||||||| ||||| || || ||||| ||||| || || | Sbjct: 998 atcaaaaatgggtcatttggatttgctcattcaatataccaatggctccaggaaagaccc 1057 Query: 447 gttcgattgtctgcagcgctcgaaactttttccagtttaccatgccaggaaaggcatggt 506 |||| || || |||||||| || ||||| || ||||| | | |||||| || |||| Sbjct: 1058 gttccatcgtttgcagcgcccgtaacttctttcagttctctgtaccaggaccagcttggt 1117 Query: 507 ggcagcttgtccctcgatggtacgaacactggacctcgaatttggtctacgatggtgata 566 ||||| |||| || ||||||| ||||||||||| ||||| || ||||| || || || | Sbjct: 1118 ggcaggttgtaccaagatggtatgaacactggacttcgaacttagtctatgacggagaca 1177 Query: 567 tgatcgtgcttcaagg 582 ||||||| |||||||| Sbjct: 1178 tgatcgtacttcaagg 1193 Score = 67.9 bits (34), Expect = 3e-08 Identities = 109/134 (81%) Strand = Plus / Plus Query: 122 acggtgacgatccagagggacctcttctatgggtatgacaccttgatggagaacgtctct 181 |||||||| || || ||||| || |||||||| ||||| || | ||||| || || ||| Sbjct: 733 acggtgacaattcaaagggatcttttctatggatatgatactctcatggaaaatgtatct 792 Query: 182 gatccctcgcacatagaatttgctcaccacaaggtcactgggcgaagagatagagccaag 241 ||||| || || ||||| |||||||| |||||||| || || ||||||| |||||||| Sbjct: 793 gatccttcccatatagattttgctcatcacaaggttacaggaagaagagacagagccaaa 852 Query: 242 cctttgccgttcaa 255 || ||||||||||| Sbjct: 853 ccattgccgttcaa 866
>gb|AY344061.1| Arabidopsis thaliana accelerated cell death 1 (ACD1) mRNA, complete cds Length = 1614 Score = 71.9 bits (36), Expect = 2e-09 Identities = 156/196 (79%) Strand = Plus / Plus Query: 387 atcagaaatgggtgatatggatttgctccttcaacattcccatggccccagggaaaactc 446 |||| |||||||| || ||||||||||| ||||| || || ||||| ||||| || || | Sbjct: 950 atcaaaaatgggtcatttggatttgctcattcaatataccaatggctccaggaaagaccc 1009 Query: 447 gttcgattgtctgcagcgctcgaaactttttccagtttaccatgccaggaaaggcatggt 506 |||| || || |||||||| || ||||| || ||||| | | |||||| || |||| Sbjct: 1010 gttccatcgtttgcagcgcccgtaacttctttcagttctctgtaccaggaccagcttggt 1069 Query: 507 ggcagcttgtccctcgatggtacgaacactggacctcgaatttggtctacgatggtgata 566 ||||| |||| || ||||||| ||||||||||| ||||| || ||||| || || || | Sbjct: 1070 ggcaggttgtaccaagatggtatgaacactggacttcgaacttagtctatgacggagaca 1129 Query: 567 tgatcgtgcttcaagg 582 ||||||| |||||||| Sbjct: 1130 tgatcgtacttcaagg 1145 Score = 67.9 bits (34), Expect = 3e-08 Identities = 109/134 (81%) Strand = Plus / Plus Query: 122 acggtgacgatccagagggacctcttctatgggtatgacaccttgatggagaacgtctct 181 |||||||| || || ||||| || |||||||| ||||| || | ||||| || || ||| Sbjct: 685 acggtgacaattcaaagggatcttttctatggatatgatactctcatggaaaatgtatct 744 Query: 182 gatccctcgcacatagaatttgctcaccacaaggtcactgggcgaagagatagagccaag 241 ||||| || || ||||| |||||||| |||||||| || || ||||||| |||||||| Sbjct: 745 gatccttcccatatagattttgctcatcacaaggttacaggaagaagagacagagccaaa 804 Query: 242 cctttgccgttcaa 255 || ||||||||||| Sbjct: 805 ccattgccgttcaa 818
>emb|BX825426.1|CNS0A525 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL36ZD05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1035 Score = 71.9 bits (36), Expect = 2e-09 Identities = 156/196 (79%) Strand = Plus / Plus Query: 387 atcagaaatgggtgatatggatttgctccttcaacattcccatggccccagggaaaactc 446 |||| |||||||| || ||||||||||| ||||| || || ||||| ||||| || || | Sbjct: 262 atcaaaaatgggtcatttggatttgctcattcaatataccaatggctccaggaaagaccc 321 Query: 447 gttcgattgtctgcagcgctcgaaactttttccagtttaccatgccaggaaaggcatggt 506 |||| || || |||||||| || ||||| || ||||| | | |||||| || |||| Sbjct: 322 gttccatcgtttgcagcgcccgtaacttctttcagttctctgtaccaggaccagcttggt 381 Query: 507 ggcagcttgtccctcgatggtacgaacactggacctcgaatttggtctacgatggtgata 566 ||||| |||| || ||||||| ||||||||||| ||||| || ||||| || || || | Sbjct: 382 ggcaggttgtaccaagatggtatgaacactggacttcgaacttagtctatgacggagaca 441 Query: 567 tgatcgtgcttcaagg 582 ||||||| |||||||| Sbjct: 442 tgatcgtacttcaagg 457 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Plus Query: 137 agggacctcttctatgggtatgacaccttgatggagaacgtctctgatccctcgcacata 196 ||||| || |||||||| ||||| || | ||||| || || |||||||| || || ||| Sbjct: 12 agggatcttttctatggatatgatactctcatggaaaatgtatctgatccttcccatata 71 Query: 197 gaatttgctcaccacaaggtcactgggcgaagagatagagccaagcctttgccgttcaa 255 || |||||||| |||||||| || || ||||||| |||||||| || ||||||||||| Sbjct: 72 gattttgctcatcacaaggttacaggaagaagagacagagccaaaccattgccgttcaa 130
>emb|BX824848.1|CNS0A4QI Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH77ZB11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1777 Score = 71.9 bits (36), Expect = 2e-09 Identities = 156/196 (79%) Strand = Plus / Plus Query: 387 atcagaaatgggtgatatggatttgctccttcaacattcccatggccccagggaaaactc 446 |||| |||||||| || ||||||||||| ||||| || || ||||| ||||| || || | Sbjct: 1064 atcaaaaatgggtcatttggatttgctcattcaatataccaatggctccaggaaagaccc 1123 Query: 447 gttcgattgtctgcagcgctcgaaactttttccagtttaccatgccaggaaaggcatggt 506 |||| || || |||||||| || ||||| || ||||| | | |||||| || |||| Sbjct: 1124 gttccatcgtttgcagcgcccgtaacttctttcagttctctgtaccaggaccagcttggt 1183 Query: 507 ggcagcttgtccctcgatggtacgaacactggacctcgaatttggtctacgatggtgata 566 ||||| |||| || ||||||| ||||||||||| ||||| || ||||| || || || | Sbjct: 1184 ggcaggttgtaccaagatggtatgaacactggacttcgaacttagtctatgacggagaca 1243 Query: 567 tgatcgtgcttcaagg 582 ||||||| |||||||| Sbjct: 1244 tgatcgtacttcaagg 1259 Score = 67.9 bits (34), Expect = 3e-08 Identities = 109/134 (81%) Strand = Plus / Plus Query: 122 acggtgacgatccagagggacctcttctatgggtatgacaccttgatggagaacgtctct 181 |||||||| || || ||||| || |||||||| ||||| || | ||||| || || ||| Sbjct: 799 acggtgacaattcaaagggatcttttctatggatatgatactctcatggaaaatgtatct 858 Query: 182 gatccctcgcacatagaatttgctcaccacaaggtcactgggcgaagagatagagccaag 241 ||||| || || ||||| |||||||| |||||||| || || ||||||| |||||||| Sbjct: 859 gatccttcccatatagattttgctcatcacaaggttacaggaagaagagacagagccaaa 918 Query: 242 cctttgccgttcaa 255 || ||||||||||| Sbjct: 919 ccattgccgttcaa 932
>gb|U77347.1|ATU77347 Arabidopsis thaliana lethal leaf-spot 1 homolog (Lls1) mRNA, partial cds Length = 1977 Score = 71.9 bits (36), Expect = 2e-09 Identities = 156/196 (79%) Strand = Plus / Plus Query: 387 atcagaaatgggtgatatggatttgctccttcaacattcccatggccccagggaaaactc 446 |||| |||||||| || ||||||||||| ||||| || || ||||| ||||| || || | Sbjct: 1215 atcaaaaatgggtcatttggatttgctcattcaatataccaatggctccaggaaagaccc 1274 Query: 447 gttcgattgtctgcagcgctcgaaactttttccagtttaccatgccaggaaaggcatggt 506 |||| || || |||||||| || ||||| || ||||| | | |||||| || |||| Sbjct: 1275 gttccatcgtttgcagcgcccgtaacttctttcagttctctgtaccaggaccagcttggt 1334 Query: 507 ggcagcttgtccctcgatggtacgaacactggacctcgaatttggtctacgatggtgata 566 ||||| |||| || ||||||| ||||||||||| ||||| || ||||| || || || | Sbjct: 1335 ggcaggttgtaccaagatggtatgaacactggacttcgaacttagtctatgacggagaca 1394 Query: 567 tgatcgtgcttcaagg 582 ||||||| |||||||| Sbjct: 1395 tgatcgtacttcaagg 1410 Score = 67.9 bits (34), Expect = 3e-08 Identities = 109/134 (81%) Strand = Plus / Plus Query: 122 acggtgacgatccagagggacctcttctatgggtatgacaccttgatggagaacgtctct 181 |||||||| || || ||||| || |||||||| ||||| || | ||||| || || ||| Sbjct: 950 acggtgacaattcaaagggatcttttctatggatatgatactctcatggaaaatgtatct 1009 Query: 182 gatccctcgcacatagaatttgctcaccacaaggtcactgggcgaagagatagagccaag 241 ||||| || || ||||| |||||||| |||||||| || || ||||||| |||||||| Sbjct: 1010 gatccttcccatatagattttgctcatcacaaggttacaggaagaagagacagagccaaa 1069 Query: 242 cctttgccgttcaa 255 || ||||||||||| Sbjct: 1070 ccattgccgttcaa 1083
>gb|AC124682.4| Mus musculus BAC clone RP24-336O24 from chromosome 6, complete sequence Length = 127717 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 487 catgccaggaaaggcatggtggcag 511 ||||||||||||||||||||||||| Sbjct: 38074 catgccaggaaaggcatggtggcag 38098
>gb|AC160998.4| Mus musculus BAC clone RP23-78N12 from chromosome 6, complete sequence Length = 279848 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 487 catgccaggaaaggcatggtggcag 511 ||||||||||||||||||||||||| Sbjct: 263303 catgccaggaaaggcatggtggcag 263327
>emb|AL391254.2|ATF28D10 Arabidopsis thaliana DNA chromosome 3, BAC clone F28D10 Length = 49890 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Plus Query: 522 gatggtacgaacactggacctcgaatttggtctacgatggtgatatgatcgtgcttcaag 581 ||||||| ||||||||||| ||||| || ||||| || || || |||||||| ||||||| Sbjct: 26187 gatggtatgaacactggacttcgaacttagtctatgacggagacatgatcgtacttcaag 26246 Query: 582 g 582 | Sbjct: 26247 g 26247 Score = 50.1 bits (25), Expect = 0.008 Identities = 79/97 (81%) Strand = Plus / Plus Query: 387 atcagaaatgggtgatatggatttgctccttcaacattcccatggccccagggaaaactc 446 |||| |||||||| || ||||||||||| ||||| || || ||||| ||||| || || | Sbjct: 25980 atcaaaaatgggtcatttggatttgctcattcaatataccaatggctccaggaaagaccc 26039 Query: 447 gttcgattgtctgcagcgctcgaaactttttccagtt 483 |||| || || |||||||| || ||||| || ||||| Sbjct: 26040 gttccatcgtttgcagcgcccgtaacttctttcagtt 26076
>gb|CP000225.1| Drosophila melanogaster genomic scaffold 211000022280724 Length = 820587 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 351 agatagagatcgacactaaatt 372 |||||||||||||||||||||| Sbjct: 397766 agatagagatcgacactaaatt 397787
>gb|AC118646.23| Mus musculus chromosome 15, clone RP24-116A18, complete sequence Length = 205272 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 487 catgccaggaaaggcatggtggcag 511 |||| |||||||||||||||||||| Sbjct: 27181 catggcaggaaaggcatggtggcag 27205
>gb|AC102220.8| Mus musculus chromosome 7, clone RP24-117E17, complete sequence Length = 182996 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 487 catgccaggaaaggcatggtggcag 511 |||| |||||||||||||||||||| Sbjct: 5321 catggcaggaaaggcatggtggcag 5297
>gb|AC102299.11| Mus musculus chromosome 7, clone RP24-397O2, complete sequence Length = 167677 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 487 catgccaggaaaggcatggtggcag 511 |||| |||||||||||||||||||| Sbjct: 108569 catggcaggaaaggcatggtggcag 108545
>gb|AC140460.3| Mus musculus BAC clone RP24-151D4 from chromosome 9, complete sequence Length = 196545 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 487 catgccaggaaaggcatggtggcag 511 |||| |||||||||||||||||||| Sbjct: 107481 catggcaggaaaggcatggtggcag 107457
>gb|AC132314.3| Mus musculus BAC clone RP24-233C4 from chromosome 18, complete sequence Length = 156356 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 479 cagtttaccatgccaggaaaggcatggtg 507 |||||||||||| |||| ||||||||||| Sbjct: 60833 cagtttaccatggcagggaaggcatggtg 60861
>emb|CR956422.6| Pig DNA sequence from clone PigE-93N11 on chromosome 6, complete sequence Length = 184430 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 133 ccagagggacctcttctatgggtatgaca 161 ||||| |||||||||||||||| |||||| Sbjct: 174847 ccagatggacctcttctatgggcatgaca 174819
>gb|AC126007.16| Medicago truncatula clone mth2-11o4, complete sequence Length = 106747 Score = 42.1 bits (21), Expect = 2.0 Identities = 75/93 (80%) Strand = Plus / Plus Query: 389 cagaaatgggtgatatggatttgctccttcaacattcccatggccccagggaaaactcgt 448 ||||||||||| |||||||| || |||||||| | |||||||| || || || ||||| Sbjct: 25500 cagaaatgggtaatatggatatgttccttcaatgtccccatggcacctggtaagactcgc 25559 Query: 449 tcgattgtctgcagcgctcgaaactttttccag 481 || || || ||||| || ||||| || |||||| Sbjct: 25560 tccatcgtttgcagtgcccgaaatttcttccag 25592
>emb|AL445467.6| Human DNA sequence from clone RP11-311M14 on chromosome X Contains the 5' end of the CTPS2 gene for CTP synthase II, the CALB3 gene for calbindin 3 (vitamin D-dependent calcium binding protein), the SYAP1 gene for synapse associated protein 1 SAP47 homolog (Drosophila) and two CpG islands, complete sequence Length = 166336 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 417 tcaacattcccatggccccag 437 ||||||||||||||||||||| Sbjct: 38045 tcaacattcccatggccccag 38065
>gb|AC154744.2| Mus musculus BAC clone RP24-394N17 from chromosome 12, complete sequence Length = 165140 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 492 caggaaaggcatggtggcagc 512 ||||||||||||||||||||| Sbjct: 49640 caggaaaggcatggtggcagc 49620
>gb|AC003665.1|AC003665 Homo sapiens chromosome 17, clone hCIT.211_P_7, complete sequence Length = 145528 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 cccacgctcctctcccaggcc 24 ||||||||||||||||||||| Sbjct: 42652 cccacgctcctctcccaggcc 42632
>gb|AC161198.5| Mus musculus chromosome 15, clone RP23-34E23, complete sequence Length = 237801 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 487 catgccaggaaaggcatggtggcag 511 |||| |||||||||||||||||||| Sbjct: 165849 catggcaggaaaggcatggtggcag 165873
>gb|AC140416.2| Mus musculus BAC clone RP24-347A16 from 6, complete sequence Length = 188390 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 493 aggaaaggcatggtggcagcttgtc 517 |||||||| |||||||||||||||| Sbjct: 11783 aggaaaggaatggtggcagcttgtc 11759
>emb|CT010463.9| Mouse DNA sequence from clone RP23-193M19 on chromosome 12, complete sequence Length = 250364 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 492 caggaaaggcatggtggcagc 512 ||||||||||||||||||||| Sbjct: 146337 caggaaaggcatggtggcagc 146317
>gb|AC116052.6| Mus musculus BAC clone RP23-291E18 from 6, complete sequence Length = 195163 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 493 aggaaaggcatggtggcagcttgtc 517 |||||||| |||||||||||||||| Sbjct: 183915 aggaaaggaatggtggcagcttgtc 183891
>gb|DQ273270.1| Allium cepa clone 1G-12-89, complete sequence Length = 107859 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 405 ggatttgctccttcaacattc 425 ||||||||||||||||||||| Sbjct: 40887 ggatttgctccttcaacattc 40867
>gb|AC160134.2| Mus musculus BAC clone RP23-139G11 from chromosome 9, complete sequence Length = 176272 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 484 taccatgccaggaaaggcatggtggcag 511 ||||||| ||||||||||||| |||||| Sbjct: 119075 taccatggcaggaaaggcatgctggcag 119048
>ref|NM_117586.2| Arabidopsis thaliana unknown protein AT4G14990 mRNA, complete cds Length = 3304 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 cccggccttctccacggtga 128 |||||||||||||||||||| Sbjct: 1102 cccggccttctccacggtga 1121
>gb|AC120871.12| Mus musculus chromosome 16, clone RP23-121E8, complete sequence Length = 218995 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 ctcctctcccaggcctgctc 29 |||||||||||||||||||| Sbjct: 173617 ctcctctcccaggcctgctc 173636
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome Length = 3481691 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 gccaaggcgaccaaacctcc 84 |||||||||||||||||||| Sbjct: 1623391 gccaaggcgaccaaacctcc 1623410
>emb|CT010512.8| Mouse DNA sequence from clone RP23-283M18 on chromosome 16, complete sequence Length = 202415 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 ctcctctcccaggcctgctc 29 |||||||||||||||||||| Sbjct: 136518 ctcctctcccaggcctgctc 136537
>ref|XM_818325.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.389.1610) partial mRNA Length = 2352 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 agagttcgatgacccggcct 116 |||||||||||||||||||| Sbjct: 1860 agagttcgatgacccggcct 1841
>gb|AC131675.4| Mus musculus BAC clone RP23-328L1 from chromosome 18, complete sequence Length = 191085 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 ccaggaaaggcatggtggca 510 |||||||||||||||||||| Sbjct: 60163 ccaggaaaggcatggtggca 60182
>emb|Z97337.2|ATFCA2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 2 Length = 202860 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 cccggccttctccacggtga 128 |||||||||||||||||||| Sbjct: 132891 cccggccttctccacggtga 132872
>emb|Y19212.1|HSDNAK6HF Homo sapiens K6hf gene for hair keratin, exons 1 to 9 Length = 17400 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 ctcctctcccaggcctgctc 29 |||||||||||||||||||| Sbjct: 15294 ctcctctcccaggcctgctc 15313
>gb|AY035039.1| Arabidopsis thaliana unknown protein (At4g14990) mRNA, complete cds Length = 3299 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 cccggccttctccacggtga 128 |||||||||||||||||||| Sbjct: 1102 cccggccttctccacggtga 1121
>dbj|AK141434.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530014K03 product:unclassifiable, full insert sequence Length = 1614 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 492 caggaaaggcatggtggcag 511 |||||||||||||||||||| Sbjct: 924 caggaaaggcatggtggcag 905
>gb|AC119212.15| Mus musculus chromosome 1, clone RP24-192L21, complete sequence Length = 174380 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 492 caggaaaggcatggtggcag 511 |||||||||||||||||||| Sbjct: 110730 caggaaaggcatggtggcag 110711
>gb|AY344063.1| Zea mays lethal leaf-spot 1 (lls1) mRNA, partial cds Length = 618 Score = 40.1 bits (20), Expect = 7.9 Identities = 39/44 (88%), Gaps = 1/44 (2%) Strand = Plus / Plus Query: 1 ttccccacgctcctctcccaggc-ctgctcttcgtctggcccga 43 |||||||| ||| ||||||||| ||||||||||| |||||||| Sbjct: 548 ttccccaccctcgtctcccaggggctgctcttcgtgtggcccga 591
>gb|AC055736.20|AC055736 Homo sapiens 12 BAC RP11-1020M18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 150902 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 ctcctctcccaggcctgctc 29 |||||||||||||||||||| Sbjct: 139772 ctcctctcccaggcctgctc 139791
>emb|BX470225.8| Mouse DNA sequence from clone RP24-83L7 on chromosome 4, complete sequence Length = 50842 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 492 caggaaaggcatggtggcag 511 |||||||||||||||||||| Sbjct: 27173 caggaaaggcatggtggcag 27192
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 16 tcccaggcctgctcttcgtctggc 39 |||||| ||||||||||||||||| Sbjct: 577737 tcccagtcctgctcttcgtctggc 577714
>emb|AL161540.2|ATCHRIV40 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 40 Length = 197405 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 cccggccttctccacggtga 128 |||||||||||||||||||| Sbjct: 78345 cccggccttctccacggtga 78326
>gb|AC133584.12| Mus musculus chromosome 5, clone RP24-448L9, complete sequence Length = 165291 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 492 caggaaaggcatggtggcag 511 |||||||||||||||||||| Sbjct: 80361 caggaaaggcatggtggcag 80380
>emb|AL669845.9| Mouse DNA sequence from clone RP23-43C21 on chromosome 11, complete sequence Length = 243954 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 492 caggaaaggcatggtggcag 511 |||||||||||||||||||| Sbjct: 210499 caggaaaggcatggtggcag 210518
>emb|AL645530.11| Mouse DNA sequence from clone RP23-92N10 on chromosome 11, complete sequence Length = 91481 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 487 catgccaggaaaggcatggtggca 510 |||| ||||||||||||||||||| Sbjct: 66651 catggcaggaaaggcatggtggca 66674 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,367,600 Number of Sequences: 3902068 Number of extensions: 4367600 Number of successful extensions: 73521 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 73352 Number of HSP's gapped (non-prelim): 167 length of query: 582 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 559 effective length of database: 17,143,297,704 effective search space: 9583103416536 effective search space used: 9583103416536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)