Clone Name | baaln17 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK100651.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111D11, full insert sequence Length = 2070 Score = 375 bits (189), Expect = e-101 Identities = 296/332 (89%) Strand = Plus / Plus Query: 1 tcccttggccccaacggaatgaataagatggncattaatcatctagacaagctctttatc 60 ||||| ||||||||||||||||||||||||| |||||| ||||| |||||||||||| || Sbjct: 241 tccctcggccccaacggaatgaataagatggtcattaaccatctcgacaagctctttgtc 300 Query: 61 acgaatgatgctgcaacaatcgtgaacgagcttgaggtccagcaccctgctgctaagctc 120 ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||| || Sbjct: 301 acgaacgatgctgcaacaattgtgaatgagctcgaggtccagcaccctgctgctaagatc 360 Query: 121 ctggtgctcgctgccagagcccaacaggaggagatcggggatggagctaacctcaccata 180 ||||| || |||| ||| || || |||||||| ||||| ||||||||||||||||||||| Sbjct: 361 ctggtactagctggcagggctcagcaggaggaaatcggtgatggagctaacctcaccata 420 Query: 181 tctttcgcgggtgaactgctcgagaaggctgaggagctcatcaggatgggactgcatcca 240 ||||| || ||||||||||| |||||||| |||||||| ||||||||||| |||||||| Sbjct: 421 tcttttgctggtgaactgcttgagaaggccgaggagcttatcaggatggggttgcatcca 480 Query: 241 agtgagatcatcattgggtataccaaggccattaataagacgcttgagattttggaggat 300 ||||||||||||||||| || |||||||||||||||||||| ||||||| ||||| ||| Sbjct: 481 agtgagatcatcattggctacaccaaggccattaataagactgttgagatcttggaagat 540 Query: 301 ctagttgagaaaggctcggaaaatatggatgt 332 || || |||||||| || ||||| |||||||| Sbjct: 541 cttgtggagaaaggttcagaaaacatggatgt 572
>ref|XM_470005.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2070 Score = 367 bits (185), Expect = 2e-98 Identities = 295/332 (88%) Strand = Plus / Plus Query: 1 tcccttggccccaacggaatgaataagatggncattaatcatctagacaagctctttatc 60 ||||| ||||||||||||||||||||||||| |||||| ||||| |||||||||||| || Sbjct: 241 tccctcggccccaacggaatgaataagatggtcattaaccatctcgacaagctctttgtc 300 Query: 61 acgaatgatgctgcaacaatcgtgaacgagcttgaggtccagcaccctgctgctaagctc 120 ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||| || Sbjct: 301 acgaacgatgctgcaacaattgtgaatgagctcgaggtccagcaccctgctgctaagatc 360 Query: 121 ctggtgctcgctgccagagcccaacaggaggagatcggggatggagctaacctcaccata 180 ||||| || |||| ||| || || |||||||| ||||| ||||||||||||||||||||| Sbjct: 361 ctggtactagctggcagggctcagcaggaggaaatcggtgatggagctaacctcaccata 420 Query: 181 tctttcgcgggtgaactgctcgagaaggctgaggagctcatcaggatgggactgcatcca 240 ||||| || ||||||||||| |||||||| |||||||| ||||||||||| |||||||| Sbjct: 421 tcttttgctggtgaactgcttgagaaggccgaggagcttatcaggatggggttgcatcca 480 Query: 241 agtgagatcatcattgggtataccaaggccattaataagacgcttgagattttggaggat 300 ||||||||||||||||| || |||||||||||||||||||| ||||||| ||||| ||| Sbjct: 481 agtgagatcatcattggctacaccaaggccattaataagactgttgagatcttggaagat 540 Query: 301 ctagttgagaaaggctcggaaaatatggatgt 332 || || |||||||| || || || |||||||| Sbjct: 541 cttgtggagaaaggttcagagaacatggatgt 572
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 319 bits (161), Expect = 3e-84 Identities = 238/264 (90%) Strand = Plus / Plus Query: 16 ggaatgaataagatggncattaatcatctagacaagctctttatcacgaatgatgctgca 75 |||||||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||||| Sbjct: 33289650 ggaatgaataagatggtcattaaccatctcgacaagctctttgtcacgaacgatgctgca 33289709 Query: 76 acaatcgtgaacgagcttgaggtccagcaccctgctgctaagctcctggtgctcgctgcc 135 ||||| ||||| ||||| |||||||||||||||||||||||| ||||||| || |||| | Sbjct: 33289710 acaattgtgaatgagctcgaggtccagcaccctgctgctaagatcctggtactagctggc 33289769 Query: 136 agagcccaacaggaggagatcggggatggagctaacctcaccatatctttcgcgggtgaa 195 || || || |||||||| ||||| |||||||||||||||||||||||||| || |||||| Sbjct: 33289770 agggctcagcaggaggaaatcggtgatggagctaacctcaccatatcttttgctggtgaa 33289829 Query: 196 ctgctcgagaaggctgaggagctcatcaggatgggactgcatccaagtgagatcatcatt 255 ||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 33289830 ctgcttgagaaggccgaggagcttatcaggatggggttgcatccaagtgagatcatcatt 33289889 Query: 256 gggtataccaaggccattaataag 279 || || |||||||||||||||||| Sbjct: 33289890 ggctacaccaaggccattaataag 33289913
>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete sequence Length = 122815 Score = 319 bits (161), Expect = 3e-84 Identities = 238/264 (90%) Strand = Plus / Plus Query: 16 ggaatgaataagatggncattaatcatctagacaagctctttatcacgaatgatgctgca 75 |||||||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||||| Sbjct: 46166 ggaatgaataagatggtcattaaccatctcgacaagctctttgtcacgaacgatgctgca 46225 Query: 76 acaatcgtgaacgagcttgaggtccagcaccctgctgctaagctcctggtgctcgctgcc 135 ||||| ||||| ||||| |||||||||||||||||||||||| ||||||| || |||| | Sbjct: 46226 acaattgtgaatgagctcgaggtccagcaccctgctgctaagatcctggtactagctggc 46285 Query: 136 agagcccaacaggaggagatcggggatggagctaacctcaccatatctttcgcgggtgaa 195 || || || |||||||| ||||| |||||||||||||||||||||||||| || |||||| Sbjct: 46286 agggctcagcaggaggaaatcggtgatggagctaacctcaccatatcttttgctggtgaa 46345 Query: 196 ctgctcgagaaggctgaggagctcatcaggatgggactgcatccaagtgagatcatcatt 255 ||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 46346 ctgcttgagaaggccgaggagcttatcaggatggggttgcatccaagtgagatcatcatt 46405 Query: 256 gggtataccaaggccattaataag 279 || || |||||||||||||||||| Sbjct: 46406 ggctacaccaaggccattaataag 46429
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 319 bits (161), Expect = 3e-84 Identities = 238/264 (90%) Strand = Plus / Plus Query: 16 ggaatgaataagatggncattaatcatctagacaagctctttatcacgaatgatgctgca 75 |||||||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||||| Sbjct: 33380160 ggaatgaataagatggtcattaaccatctcgacaagctctttgtcacgaacgatgctgca 33380219 Query: 76 acaatcgtgaacgagcttgaggtccagcaccctgctgctaagctcctggtgctcgctgcc 135 ||||| ||||| ||||| |||||||||||||||||||||||| ||||||| || |||| | Sbjct: 33380220 acaattgtgaatgagctcgaggtccagcaccctgctgctaagatcctggtactagctggc 33380279 Query: 136 agagcccaacaggaggagatcggggatggagctaacctcaccatatctttcgcgggtgaa 195 || || || |||||||| ||||| |||||||||||||||||||||||||| || |||||| Sbjct: 33380280 agggctcagcaggaggaaatcggtgatggagctaacctcaccatatcttttgctggtgaa 33380339 Query: 196 ctgctcgagaaggctgaggagctcatcaggatgggactgcatccaagtgagatcatcatt 255 ||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 33380340 ctgcttgagaaggccgaggagcttatcaggatggggttgcatccaagtgagatcatcatt 33380399 Query: 256 gggtataccaaggccattaataag 279 || || |||||||||||||||||| Sbjct: 33380400 ggctacaccaaggccattaataag 33380423
>gb|AC133218.3| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0549G05, complete sequence Length = 147182 Score = 133 bits (67), Expect = 4e-28 Identities = 96/106 (90%) Strand = Plus / Plus Query: 20 tgaataagatggncattaatcatctagacaagctctttatcacgaatgatgctgcaacaa 79 |||||||||||| |||| | ||||| |||||||||||| |||| || | ||||||||||| Sbjct: 63668 tgaataagatggtcattgaccatctcgacaagctctttgtcacaaacgctgctgcaacaa 63727 Query: 80 tcgtgaacgagcttgaggtccagcaccctgctgctaagctcctggt 125 | |||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 63728 ttgtgaacgagcttgaggtccagcaccctgctgctaagatcctggt 63773 Score = 75.8 bits (38), Expect = 8e-11 Identities = 87/102 (85%), Gaps = 1/102 (0%) Strand = Plus / Plus Query: 149 aggagatcggggatggagctaacctcaccatatctttcgcgggt-gaactgctcgagaag 207 ||||||| || |||||||||||||||||||||||||| || | | | ||||| |||||| Sbjct: 63788 aggagattggtgatggagctaacctcaccatatcttttgctgatggggctgcttgagaag 63847 Query: 208 gctgaggagctcatcaggatgggactgcatccaagtgagatc 249 ||| ||||||| |||||||||| |||||||||||| |||| Sbjct: 63848 gctaaggagcttgtcaggatggggttgcatccaagtgtgatc 63889
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 4e-28 Identities = 96/106 (90%) Strand = Plus / Plus Query: 20 tgaataagatggncattaatcatctagacaagctctttatcacgaatgatgctgcaacaa 79 |||||||||||| |||| | ||||| |||||||||||| |||| || | ||||||||||| Sbjct: 20942056 tgaataagatggtcattgaccatctcgacaagctctttgtcacaaacgctgctgcaacaa 20942115 Query: 80 tcgtgaacgagcttgaggtccagcaccctgctgctaagctcctggt 125 | |||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 20942116 ttgtgaacgagcttgaggtccagcaccctgctgctaagatcctggt 20942161 Score = 75.8 bits (38), Expect = 8e-11 Identities = 87/102 (85%), Gaps = 1/102 (0%) Strand = Plus / Plus Query: 149 aggagatcggggatggagctaacctcaccatatctttcgcgggt-gaactgctcgagaag 207 ||||||| || |||||||||||||||||||||||||| || | | | ||||| |||||| Sbjct: 20942176 aggagattggtgatggagctaacctcaccatatcttttgctgatggggctgcttgagaag 20942235 Query: 208 gctgaggagctcatcaggatgggactgcatccaagtgagatc 249 ||| ||||||| |||||||||| |||||||||||| |||| Sbjct: 20942236 gctaaggagcttgtcaggatggggttgcatccaagtgtgatc 20942277
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 4e-28 Identities = 96/106 (90%) Strand = Plus / Plus Query: 20 tgaataagatggncattaatcatctagacaagctctttatcacgaatgatgctgcaacaa 79 |||||||||||| |||| | ||||| |||||||||||| |||| || | ||||||||||| Sbjct: 21252291 tgaataagatggtcattgaccatctcgacaagctctttgtcacaaacgctgctgcaacaa 21252350 Query: 80 tcgtgaacgagcttgaggtccagcaccctgctgctaagctcctggt 125 | |||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 21252351 ttgtgaacgagcttgaggtccagcaccctgctgctaagatcctggt 21252396 Score = 75.8 bits (38), Expect = 8e-11 Identities = 87/102 (85%), Gaps = 1/102 (0%) Strand = Plus / Plus Query: 149 aggagatcggggatggagctaacctcaccatatctttcgcgggt-gaactgctcgagaag 207 ||||||| || |||||||||||||||||||||||||| || | | | ||||| |||||| Sbjct: 21252411 aggagattggtgatggagctaacctcaccatatcttttgctgatggggctgcttgagaag 21252470 Query: 208 gctgaggagctcatcaggatgggactgcatccaagtgagatc 249 ||| ||||||| |||||||||| |||||||||||| |||| Sbjct: 21252471 gctaaggagcttgtcaggatggggttgcatccaagtgtgatc 21252512
>emb|BX823289.1|CNS0A7D6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS1ZF10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2049 Score = 101 bits (51), Expect = 1e-18 Identities = 194/242 (80%) Strand = Plus / Plus Query: 10 cccaacggaatgaataagatggncattaatcatctagacaagctctttatcacgaatgat 69 ||||| |||||||||||||||| || |||||| | ||||| || ||| |||| ||||| Sbjct: 290 cccaatggaatgaataagatggttatcaatcatttggacaaactgtttgtcacaaatgac 349 Query: 70 gctgcaacaatcgtgaacgagcttgaggtccagcaccctgctgctaagctcctggtgctc 129 ||||| || || ||||| ||||| ||| | |||||||| |||||||| || ||||| | Sbjct: 350 gctgctactatagtgaatgagctcgagattcagcacccggctgctaaacttctggtttta 409 Query: 130 gctgccagagcccaacaggaggagatcggggatggagctaacctcaccatatctttcgcg 189 ||||| | || || || || || ||||| ||||||||||| || || || || || || Sbjct: 410 gctgctaaggctcagcaagaagaaatcggagatggagctaatctgacaatctcctttgct 469 Query: 190 ggtgaactgctcgagaaggctgaggagctcatcaggatgggactgcatccaagtgagatc 249 |||||||| || | || ||||||||||| |||||||||||||| ||||| ||||||||| Sbjct: 470 ggtgaacttcttcaaaacgctgaggagcttatcaggatgggacttcatccgagtgagatc 529 Query: 250 at 251 || Sbjct: 530 at 531
>ref|NM_111267.3| Arabidopsis thaliana ATP binding / protein binding AT3G03960 mRNA, complete cds Length = 2054 Score = 93.7 bits (47), Expect = 3e-16 Identities = 193/242 (79%) Strand = Plus / Plus Query: 10 cccaacggaatgaataagatggncattaatcatctagacaagctctttatcacgaatgat 69 ||||| ||||||||||| |||| || |||||| | ||||| || ||| |||| ||||| Sbjct: 290 cccaatggaatgaataaaatggttatcaatcatttggacaaactgtttgtcacaaatgac 349 Query: 70 gctgcaacaatcgtgaacgagcttgaggtccagcaccctgctgctaagctcctggtgctc 129 ||||| || || ||||| ||||| ||| | |||||||| |||||||| || ||||| | Sbjct: 350 gctgctactatagtgaatgagctcgagattcagcacccggctgctaaacttctggtttta 409 Query: 130 gctgccagagcccaacaggaggagatcggggatggagctaacctcaccatatctttcgcg 189 ||||| | || || || || || ||||| ||||||||||| || || || || || || Sbjct: 410 gctgctaaggctcagcaagaagaaatcggagatggagctaatctgacaatctcctttgct 469 Query: 190 ggtgaactgctcgagaaggctgaggagctcatcaggatgggactgcatccaagtgagatc 249 |||||||| || | || ||||||||||| |||||||||||||| ||||| ||||||||| Sbjct: 470 ggtgaacttcttcaaaacgctgaggagcttatcaggatgggacttcatccgagtgagatc 529 Query: 250 at 251 || Sbjct: 530 at 531
>gb|BT010388.1| Arabidopsis thaliana At3g03960 mRNA, complete cds Length = 1650 Score = 93.7 bits (47), Expect = 3e-16 Identities = 193/242 (79%) Strand = Plus / Plus Query: 10 cccaacggaatgaataagatggncattaatcatctagacaagctctttatcacgaatgat 69 ||||| ||||||||||| |||| || |||||| | ||||| || ||| |||| ||||| Sbjct: 145 cccaatggaatgaataaaatggttatcaatcatttggacaaactgtttgtcacaaatgac 204 Query: 70 gctgcaacaatcgtgaacgagcttgaggtccagcaccctgctgctaagctcctggtgctc 129 ||||| || || ||||| ||||| ||| | |||||||| |||||||| || ||||| | Sbjct: 205 gctgctactatagtgaatgagctcgagattcagcacccggctgctaaacttctggtttta 264 Query: 130 gctgccagagcccaacaggaggagatcggggatggagctaacctcaccatatctttcgcg 189 ||||| | || || || || || ||||| ||||||||||| || || || || || || Sbjct: 265 gctgctaaggctcagcaagaagaaatcggagatggagctaatctgacaatctcctttgct 324 Query: 190 ggtgaactgctcgagaaggctgaggagctcatcaggatgggactgcatccaagtgagatc 249 |||||||| || | || ||||||||||| |||||||||||||| ||||| ||||||||| Sbjct: 325 ggtgaacttcttcaaaacgctgaggagcttatcaggatgggacttcatccgagtgagatc 384 Query: 250 at 251 || Sbjct: 385 at 386
>gb|AF370490.1|AF370490 Arabidopsis thaliana putative T-complex protein 1, theta subunit; TCP-1-Theta (T11I18.7) mRNA, complete cds Length = 1932 Score = 93.7 bits (47), Expect = 3e-16 Identities = 193/242 (79%) Strand = Plus / Plus Query: 10 cccaacggaatgaataagatggncattaatcatctagacaagctctttatcacgaatgat 69 ||||| ||||||||||| |||| || |||||| | ||||| || ||| |||| ||||| Sbjct: 285 cccaatggaatgaataaaatggttatcaatcatttggacaaactgtttgtcacaaatgac 344 Query: 70 gctgcaacaatcgtgaacgagcttgaggtccagcaccctgctgctaagctcctggtgctc 129 ||||| || || ||||| ||||| ||| | |||||||| |||||||| || ||||| | Sbjct: 345 gctgctactatagtgaatgagctcgagattcagcacccggctgctaaacttctggtttta 404 Query: 130 gctgccagagcccaacaggaggagatcggggatggagctaacctcaccatatctttcgcg 189 ||||| | || || || || || ||||| ||||||||||| || || || || || || Sbjct: 405 gctgctaaggctcagcaagaagaaatcggagatggagctaatctgacaatctcctttgct 464 Query: 190 ggtgaactgctcgagaaggctgaggagctcatcaggatgggactgcatccaagtgagatc 249 |||||||| || | || ||||||||||| |||||||||||||| ||||| ||||||||| Sbjct: 465 ggtgaacttcttcaaaacgctgaggagcttatcaggatgggacttcatccgagtgagatc 524 Query: 250 at 251 || Sbjct: 525 at 526
>gb|AC011698.6|ATAC011698 Arabidopsis thaliana chromosome III BAC T11I18 genomic sequence, complete sequence Length = 63654 Score = 89.7 bits (45), Expect = 5e-15 Identities = 188/236 (79%) Strand = Plus / Plus Query: 16 ggaatgaataagatggncattaatcatctagacaagctctttatcacgaatgatgctgca 75 ||||||||||| |||| || |||||| | ||||| || ||| |||| ||||| ||||| Sbjct: 21435 ggaatgaataaaatggttatcaatcatttggacaaactgtttgtcacaaatgacgctgct 21494 Query: 76 acaatcgtgaacgagcttgaggtccagcaccctgctgctaagctcctggtgctcgctgcc 135 || || ||||| ||||| ||| | |||||||| |||||||| || ||||| | ||||| Sbjct: 21495 actatagtgaatgagctcgagattcagcacccggctgctaaacttctggttttagctgct 21554 Query: 136 agagcccaacaggaggagatcggggatggagctaacctcaccatatctttcgcgggtgaa 195 | || || || || || ||||| ||||||||||| || || || || || || |||||| Sbjct: 21555 aaggctcagcaagaagaaatcggagatggagctaatctgacaatctcctttgctggtgaa 21614 Query: 196 ctgctcgagaaggctgaggagctcatcaggatgggactgcatccaagtgagatcat 251 || || | || ||||||||||| |||||||||||||| ||||| ||||||||||| Sbjct: 21615 cttcttcaaaacgctgaggagcttatcaggatgggacttcatccgagtgagatcat 21670
>dbj|AP004491.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT17G08, TM0023, complete sequence Length = 91039 Score = 79.8 bits (40), Expect = 5e-12 Identities = 81/95 (85%) Strand = Plus / Minus Query: 19 atgaataagatggncattaatcatctagacaagctctttatcacgaatgatgctgcaaca 78 ||||||||||||| ||||||||| | |||||||| ||| |||||||||| || || ||| Sbjct: 77620 atgaataagatggttattaatcatttggacaagctttttgtcacgaatgacgccgctaca 77561 Query: 79 atcgtgaacgagcttgaggtccagcaccctgctgc 113 || ||||| |||||||| || ||||| |||||||| Sbjct: 77560 attgtgaatgagcttgaagttcagcatcctgctgc 77526 Score = 54.0 bits (27), Expect = 3e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 208 gctgaggagctcatcaggatgggactgcatccaagtgagatcatcattgggtataccaa 266 ||||||||||| ||||||||||| |||| || || |||||||||| ||| |||||||| Sbjct: 77431 gctgaggagcttatcaggatgggtttgcacccgagcgagatcatcagtggatataccaa 77373
>ref|XM_783013.1| PREDICTED: Strongylocentrotus purpuratus similar to chaperonin containing TCP1, subunit 8 (theta) (LOC583086), partial mRNA Length = 1407 Score = 63.9 bits (32), Expect = 3e-07 Identities = 82/99 (82%) Strand = Plus / Plus Query: 19 atgaataagatggncattaatcatctagacaagctctttatcacgaatgatgctgcaaca 78 ||||||||||||| ||| || || |||| ||||||||| |||| ||||| |||||||| Sbjct: 112 atgaataagatggtcatcaaccacatagagaagctctttgtcacaaatgacgctgcaacc 171 Query: 79 atcgtgaacgagcttgaggtccagcaccctgctgctaag 117 || | || ||| | ||||| |||||||||||||||||| Sbjct: 172 attctcaaagagttggaggttcagcaccctgctgctaag 210
>gb|AY393846.1| Gallus gallus chaperonin subunit 8 theta mRNA, complete cds Length = 1647 Score = 50.1 bits (25), Expect = 0.005 Identities = 84/104 (80%) Strand = Plus / Plus Query: 10 cccaacggaatgaataagatggncattaatcatctagacaagctctttatcacgaatgat 69 ||||| |||||||| || |||| || |||||||| || ||||| ||| | || |||||| Sbjct: 145 cccaatggaatgaacaaaatggttatcaatcatctggagaagctttttgttacaaatgat 204 Query: 70 gctgcaacaatcgtgaacgagcttgaggtccagcaccctgctgc 113 ||||| || ||| ||| ||| | ||||||||||| |||||||| Sbjct: 205 gctgctactatcttgagagagttggaggtccagcatcctgctgc 248
>ref|NM_001004389.1| Gallus gallus chaperonin containing TCP1, subunit 8 (theta) (CCT8), mRNA Length = 1647 Score = 50.1 bits (25), Expect = 0.005 Identities = 84/104 (80%) Strand = Plus / Plus Query: 10 cccaacggaatgaataagatggncattaatcatctagacaagctctttatcacgaatgat 69 ||||| |||||||| || |||| || |||||||| || ||||| ||| | || |||||| Sbjct: 145 cccaatggaatgaacaaaatggttatcaatcatctggagaagctttttgttacaaatgat 204 Query: 70 gctgcaacaatcgtgaacgagcttgaggtccagcaccctgctgc 113 ||||| || ||| ||| ||| | ||||||||||| |||||||| Sbjct: 205 gctgctactatcttgagagagttggaggtccagcatcctgctgc 248
>ref|XM_385795.1| Gibberella zeae PH-1 chromosome 3 conserved hypothetical protein (FG05619.1) partial mRNA Length = 5052 Score = 46.1 bits (23), Expect = 0.071 Identities = 26/27 (96%) Strand = Plus / Minus Query: 196 ctgctcgagaaggctgaggagctcatc 222 ||||||||||||||||| ||||||||| Sbjct: 3939 ctgctcgagaaggctgatgagctcatc 3913
>ref|NM_112896.2| Arabidopsis thaliana ATTCP-1; ATP binding / protein binding AT3G20050 (ATTCP-1) mRNA, complete cds Length = 2063 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 gaggtccagcaccctgctgctaag 117 |||||| ||||||||||||||||| Sbjct: 340 gaggtcgagcaccctgctgctaag 363
>gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, complete sequence Length = 253910 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 agctcatcaggatgggactg 234 |||||||||||||||||||| Sbjct: 86843 agctcatcaggatgggactg 86824
>tpg|BK005598.1| TPA: TPA_exp: Homo sapiens NSP (NSP) gene, complete cds, alternatively spliced Length = 227735 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 ctgcatccaagtgagatcat 251 |||||||||||||||||||| Sbjct: 38581 ctgcatccaagtgagatcat 38600
>emb|BX823612.1|CNS0A4WG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS56ZH05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1961 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 gaggtccagcaccctgctgctaag 117 |||||| ||||||||||||||||| Sbjct: 324 gaggtcgagcaccctgctgctaag 347
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 tccagcaccctgctgctaag 117 |||||||||||||||||||| Sbjct: 2085050 tccagcaccctgctgctaag 2085069
>gb|AC007963.7|AC007963 Homo sapiens chromosome 17, clone CTD-2010G8, complete sequence Length = 133488 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 ctgcatccaagtgagatcat 251 |||||||||||||||||||| Sbjct: 88636 ctgcatccaagtgagatcat 88655
>dbj|AP000383.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MAL21 Length = 83253 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 94 gaggtccagcaccctgctgctaag 117 |||||| ||||||||||||||||| Sbjct: 21891 gaggtcgagcaccctgctgctaag 21868
>dbj|D11351.1|ATHTCP1H A. thaliana mRNA for t-complex polypeptide 1 homologue, complete cds Length = 2024 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 gaggtccagcaccctgctgctaag 117 |||||| ||||||||||||||||| Sbjct: 339 gaggtcgagcaccctgctgctaag 362
>dbj|D11352.1| Arabidopsis thaliana DNA for CCT alpha/TCP-1, complete cds Length = 6533 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 gaggtccagcaccctgctgctaag 117 |||||| ||||||||||||||||| Sbjct: 2285 gaggtcgagcaccctgctgctaag 2308
>gb|AY389884.1| Uncultured archaeon clone NBFF33 putative thermosome subunit gene, partial cds Length = 700 Score = 40.1 bits (20), Expect = 4.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 94 gaggtccagcaccctgctgctaagctcctggt 125 ||||| ||||||||||| || ||||||||||| Sbjct: 259 gaggttcagcaccctgccgcgaagctcctggt 290
>gb|BT002052.1| Arabidopsis thaliana t-complex polypeptide 1 homologue (At3g20050) mRNA, complete cds Length = 2022 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 gaggtccagcaccctgctgctaag 117 |||||| ||||||||||||||||| Sbjct: 338 gaggtcgagcaccctgctgctaag 361
>gb|BT021103.1| Arabidopsis thaliana At3g20050 gene, complete cds Length = 1718 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 gaggtccagcaccctgctgctaag 117 |||||| ||||||||||||||||| Sbjct: 256 gaggtcgagcaccctgctgctaag 279
>dbj|D29672.1|PYWHSP Pyrococcus sp. KOD1 gene for heat-shock protein, complete cds Length = 1838 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 tccagcaccctgctgctaag 117 |||||||||||||||||||| Sbjct: 319 tccagcaccctgctgctaag 338
>dbj|AB001083.1| Thermococcus sp. DNA for chaperonin beta subunit, complete cds Length = 2030 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 tccagcaccctgctgctaag 117 |||||||||||||||||||| Sbjct: 428 tccagcaccctgctgctaag 447
>dbj|AB001081.2| Thermococcus sp. DNA for chaperonin beta subunit, complete cds Length = 1980 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 tccagcaccctgctgctaag 117 |||||||||||||||||||| Sbjct: 368 tccagcaccctgctgctaag 387 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,329,797 Number of Sequences: 3902068 Number of extensions: 2329797 Number of successful extensions: 38829 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38701 Number of HSP's gapped (non-prelim): 127 length of query: 333 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 311 effective length of database: 17,147,199,772 effective search space: 5332779129092 effective search space used: 5332779129092 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)