ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baaln16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009602.1| Triticum aestivum clone wre1n.pk0080.f8:fis, full... 1013 0.0
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
3dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
4dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
5ref|XM_482632.1| Oryza sativa (japonica cultivar-group), mRNA 125 2e-25
6ref|XM_507247.1| PREDICTED Oryza sativa (japonica cultivar-group... 125 2e-25
7dbj|AK102411.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 2e-25
8dbj|AK071719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 2e-25
9dbj|AK059843.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 2e-25
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-11
11dbj|AP004703.3| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-11
12dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-11
13dbj|AK106976.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 2e-10
14gb|AY106301.1| Zea mays PCO140890 mRNA sequence 76 2e-10
15ref|NM_112728.2| Arabidopsis thaliana calcium ion binding AT3G18... 42 2.1
16ref|XM_533013.2| PREDICTED: Canis familiaris similar to Transcri... 42 2.1
17gb|AE004159.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 42 2.1
18gb|AY091287.1| Arabidopsis thaliana unknown protein (At3g18430) ... 42 2.1
19gb|AY063789.1| Arabidopsis thaliana unknown protein (At3g18430) ... 42 2.1
20gb|AC087274.8| Homo sapiens chromosome 8, clone RP11-681J6, comp... 42 2.1
21emb|BX825707.1|CNS0A51F Arabidopsis thaliana Full-length cDNA Co... 42 2.1
22gb|AY087152.1| Arabidopsis thaliana clone 32274 mRNA, complete s... 42 2.1
23dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome 42 2.1
24dbj|AB026658.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 2.1
25emb|AL132800.4|CNS01DTM Human chromosome 14 DNA sequence BAC R-8... 42 2.1
26emb|AL845542.9| Mouse DNA sequence from clone RP23-288I12 on chr... 42 2.1
27gb|M15540.1|STMAMYHY S.hygroscopicus alpha-amylase gene, complet... 42 2.1
28gb|AC161474.4| Pan troglodytes BAC clone CH251-488B17 from chrom... 40 8.5
29ref|XM_612660.2| PREDICTED: Bos taurus similar to Transcription ... 40 8.5
30gb|AC101787.11| Mus musculus chromosome 1, clone RP24-147F6, com... 40 8.5
31gb|AC146002.2| Pan troglodytes BAC clone RP43-153B17 from 7, com... 40 8.5
32gb|AC002127.1| Homo sapiens BAC clone CTA-305H12 from 7, complet... 40 8.5
33emb|AL158154.28| Human DNA sequence from clone RP11-383M4 on chr... 40 8.5
34gb|AC162899.5| Mus musculus chromosome 1, clone RP24-222G3, comp... 40 8.5
35gb|U39674.1| Caenorhabditis elegans cosmid C06E2, complete sequence 40 8.5
36gb|AC083813.29| Homo sapiens 12q BAC RP11-304C10 (Roswell Park C... 40 8.5
37gb|AC009708.11| Homo sapiens chromosome 8, clone RP11-318G5, com... 40 8.5
38gb|DQ027001.1| Homo sapiens ribonucleotide reductase M2 B (TP53 ... 40 8.5
39gb|AC016748.3| Homo sapiens BAC clone RP11-494M7 from 2, complet... 40 8.5
40dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 8.5
41gb|AE004726.1| Pseudomonas aeruginosa PAO1, section 287 of 529 o... 40 8.5
42dbj|AP002907.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 8.5
43emb|AL670680.6| Mouse DNA sequence from clone RP23-314D24 on chr... 40 8.5 
>gb|BT009602.1| Triticum aestivum clone wre1n.pk0080.f8:fis, full insert mRNA
           sequence
          Length = 899

 Score = 1013 bits (511), Expect = 0.0
 Identities = 566/583 (97%), Gaps = 1/583 (0%)
 Strand = Plus / Plus

                                                                       
Query: 27  cgatggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcact 86
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 61  cgatggggaacgcgtcgtcgatgctgacgcagtacgacatcgaggaggtgcaggagcact 120

                                                                       
Query: 87  gcagctacctattctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcg 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcagctacctattctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcg 180

                                                                       
Query: 147 accgcagcgccaagggcttcgtcgccgaggacgagttcctctccatcccggagtactcca 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 accgcagcgccaagggcttcgtcgccgaggacgagttcctctccatcccggagtactcca 240

                                                                       
Query: 207 ccaacccgctctcccagaggttgctacgtatggttgatggattgaacttcaaggaatttg 266
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccaacccgctctcccagaggctgctacgtatggttgatggattgaacttcaaggaatttg 300

                                                                       
Query: 267 tttcgtttctctctaccttcagcacaagggccagctttcagcaaaagattgagttgatgt 326
           |||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| || |
Sbjct: 301 tttcttttctctctaccttcagcgcaagggccagccttcagcaaaagattgagttcatat 360

                                                                       
Query: 327 ttaaggtgtatgacattgatggcaaggggaaagtaagcttcaaggacctggtagaggttt 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttaaggtgtatgacattgatggcaaggggaaagtaagcttcaaggacctggtagaggttt 420

                                                                       
Query: 387 tacgggacctaacgggctcatccatgtcagagcaacaaagagagcaagtactaacaaagg 446
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 421 tacgggacctaacgggctcatccatgtcagagaaacaaagagagcaagtactaacaaagg 480

                                                                       
Query: 447 tgttggaagaagctgggtacacacgggattccactctatcattagaagattttgtgacga 506
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgttggaagaagctgggtatacacgggattccactctatcattagaagattttgtgacga 540

                                                                       
Query: 507 tcatcgaccaccctggcctgaaaatggaggtgggaagtgcccatcgactagtgaagggag 566
           |||||| |||| |||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct: 541 tcatcggccacactggcctgaagatggaggt-ggaagtgcccatcgactagtgaagggcg 599

                                                      
Query: 567 aatgcagatttcagcagatgaggatgcagcaagctctcagtca 609
            ||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 600 gatgcagatttcagcagatggggatgcagcaagctctctgtca 642
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  170 bits (86), Expect = 3e-39
 Identities = 113/122 (92%)
 Strand = Plus / Minus

                                                                            
Query: 99       tctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcgaccgcagcgcca 158
                |||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct: 34227967 tctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctggatcggagcgcca 34227908

                                                                            
Query: 159      agggcttcgtcgccgaggacgagttcctctccatcccggagtactccaccaacccgctct 218
                |||| ||| || |||||||||||||||||||||||||||||| ||||  |||||||||||
Sbjct: 34227907 aggggttcatctccgaggacgagttcctctccatcccggagttctccctcaacccgctct 34227848

                  
Query: 219      cc 220
                ||
Sbjct: 34227847 cc 34227846



 Score =  123 bits (62), Expect = 7e-25
 Identities = 92/102 (90%)
 Strand = Plus / Minus

                                                                            
Query: 329      aaggtgtatgacattgatggcaaggggaaagtaagcttcaaggacctggtagaggtttta 388
                ||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| 
Sbjct: 34226890 aaggtgtatgacattgatggcaaggggaaggtaaccttcaaagacctggtagaggttttg 34226831

                                                          
Query: 389      cgggacctaacgggctcatccatgtcagagcaacaaagagag 430
                ||||||| ||| || |||| |||| ||||| |||||||||||
Sbjct: 34226830 cgggaccaaacagggtcattcatgacagaggaacaaagagag 34226789



 Score =  117 bits (59), Expect = 5e-23
 Identities = 89/99 (89%)
 Strand = Plus / Minus

                                                                            
Query: 222      agaggttgctacgtatggttgatggattgaacttcaaggaatttgtttcgtttctctcta 281
                |||||||||| ||||||||||||||  ||||||||||||| |||||||| || |||||||
Sbjct: 34227115 agaggttgctgcgtatggttgatgggctgaacttcaaggattttgtttccttcctctcta 34227056

                                                       
Query: 282      ccttcagcacaagggccagctttcagcaaaagattgagt 320
                |||||||  ||| ||||||| ||||||||||||||||||
Sbjct: 34227055 ccttcagtgcaaaggccagcgttcagcaaaagattgagt 34227017



 Score =  103 bits (52), Expect = 7e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                            
Query: 29       atggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactgc 88
                ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct: 34228140 atggggaacgcgtcgtcgatgctcacccagtacgacatcgaggaggtgcaggagcactgc 34228081

                        
Query: 89       agctacct 96
                | ||||||
Sbjct: 34228080 aactacct 34228073



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                            
Query: 433      agtactaacaaaggtgttggaagaagctgggtacacacgggattccactctatcattaga 492
                |||| ||||||| ||  ||||||||||||| |||||| |||||| ||| || || || ||
Sbjct: 34226070 agtaataacaaatgtactggaagaagctggatacacaagggattgcacgctttctttgga 34226011

                       
Query: 493      agatttt 499
                |||||||
Sbjct: 34226010 agatttt 34226004
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>dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0032L17
          Length = 165808

 Score =  170 bits (86), Expect = 3e-39
 Identities = 113/122 (92%)
 Strand = Plus / Minus

                                                                          
Query: 99     tctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcgaccgcagcgcca 158
              |||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct: 155481 tctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctggatcggagcgcca 155422

                                                                          
Query: 159    agggcttcgtcgccgaggacgagttcctctccatcccggagtactccaccaacccgctct 218
              |||| ||| || |||||||||||||||||||||||||||||| ||||  |||||||||||
Sbjct: 155421 aggggttcatctccgaggacgagttcctctccatcccggagttctccctcaacccgctct 155362

                
Query: 219    cc 220
              ||
Sbjct: 155361 cc 155360



 Score =  123 bits (62), Expect = 7e-25
 Identities = 92/102 (90%)
 Strand = Plus / Minus

                                                                          
Query: 329    aaggtgtatgacattgatggcaaggggaaagtaagcttcaaggacctggtagaggtttta 388
              ||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| 
Sbjct: 154404 aaggtgtatgacattgatggcaaggggaaggtaaccttcaaagacctggtagaggttttg 154345

                                                        
Query: 389    cgggacctaacgggctcatccatgtcagagcaacaaagagag 430
              ||||||| ||| || |||| |||| ||||| |||||||||||
Sbjct: 154344 cgggaccaaacagggtcattcatgacagaggaacaaagagag 154303



 Score =  117 bits (59), Expect = 5e-23
 Identities = 89/99 (89%)
 Strand = Plus / Minus

                                                                          
Query: 222    agaggttgctacgtatggttgatggattgaacttcaaggaatttgtttcgtttctctcta 281
              |||||||||| ||||||||||||||  ||||||||||||| |||||||| || |||||||
Sbjct: 154629 agaggttgctgcgtatggttgatgggctgaacttcaaggattttgtttccttcctctcta 154570

                                                     
Query: 282    ccttcagcacaagggccagctttcagcaaaagattgagt 320
              |||||||  ||| ||||||| ||||||||||||||||||
Sbjct: 154569 ccttcagtgcaaaggccagcgttcagcaaaagattgagt 154531



 Score =  103 bits (52), Expect = 7e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                          
Query: 29     atggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactgc 88
              ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct: 155654 atggggaacgcgtcgtcgatgctcacccagtacgacatcgaggaggtgcaggagcactgc 155595

                      
Query: 89     agctacct 96
              | ||||||
Sbjct: 155594 aactacct 155587



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                          
Query: 433    agtactaacaaaggtgttggaagaagctgggtacacacgggattccactctatcattaga 492
              |||| ||||||| ||  ||||||||||||| |||||| |||||| ||| || || || ||
Sbjct: 153584 agtaataacaaatgtactggaagaagctggatacacaagggattgcacgctttctttgga 153525

                     
Query: 493    agatttt 499
              |||||||
Sbjct: 153524 agatttt 153518
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>dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0689B12
          Length = 154745

 Score =  170 bits (86), Expect = 3e-39
 Identities = 113/122 (92%)
 Strand = Plus / Minus

                                                                         
Query: 99    tctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcgaccgcagcgcca 158
             |||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct: 63240 tctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctggatcggagcgcca 63181

                                                                         
Query: 159   agggcttcgtcgccgaggacgagttcctctccatcccggagtactccaccaacccgctct 218
             |||| ||| || |||||||||||||||||||||||||||||| ||||  |||||||||||
Sbjct: 63180 aggggttcatctccgaggacgagttcctctccatcccggagttctccctcaacccgctct 63121

               
Query: 219   cc 220
             ||
Sbjct: 63120 cc 63119



 Score =  123 bits (62), Expect = 7e-25
 Identities = 92/102 (90%)
 Strand = Plus / Minus

                                                                         
Query: 329   aaggtgtatgacattgatggcaaggggaaagtaagcttcaaggacctggtagaggtttta 388
             ||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| 
Sbjct: 62163 aaggtgtatgacattgatggcaaggggaaggtaaccttcaaagacctggtagaggttttg 62104

                                                       
Query: 389   cgggacctaacgggctcatccatgtcagagcaacaaagagag 430
             ||||||| ||| || |||| |||| ||||| |||||||||||
Sbjct: 62103 cgggaccaaacagggtcattcatgacagaggaacaaagagag 62062



 Score =  117 bits (59), Expect = 5e-23
 Identities = 89/99 (89%)
 Strand = Plus / Minus

                                                                         
Query: 222   agaggttgctacgtatggttgatggattgaacttcaaggaatttgtttcgtttctctcta 281
             |||||||||| ||||||||||||||  ||||||||||||| |||||||| || |||||||
Sbjct: 62388 agaggttgctgcgtatggttgatgggctgaacttcaaggattttgtttccttcctctcta 62329

                                                    
Query: 282   ccttcagcacaagggccagctttcagcaaaagattgagt 320
             |||||||  ||| ||||||| ||||||||||||||||||
Sbjct: 62328 ccttcagtgcaaaggccagcgttcagcaaaagattgagt 62290



 Score =  103 bits (52), Expect = 7e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                         
Query: 29    atggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactgc 88
             ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct: 63413 atggggaacgcgtcgtcgatgctcacccagtacgacatcgaggaggtgcaggagcactgc 63354

                     
Query: 89    agctacct 96
             | ||||||
Sbjct: 63353 aactacct 63346



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                         
Query: 433   agtactaacaaaggtgttggaagaagctgggtacacacgggattccactctatcattaga 492
             |||| ||||||| ||  ||||||||||||| |||||| |||||| ||| || || || ||
Sbjct: 61343 agtaataacaaatgtactggaagaagctggatacacaagggattgcacgctttctttgga 61284

                    
Query: 493   agatttt 499
             |||||||
Sbjct: 61283 agatttt 61277
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>ref|XM_482632.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 952

 Score =  125 bits (63), Expect = 2e-25
 Identities = 108/123 (87%)
 Strand = Plus / Plus

                                                                       
Query: 28  gatggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactg 87
           |||||||| | | |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 137 gatggggagcacctcgtcgatgctgacgcagtacgacatcgaggaggtccaggaccactg 196

                                                                       
Query: 88  cagctacctattctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcga 147
           |  | ||   |||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 197 cgaccacgccttctcgcagcaggagatcgtgtcgctgtaccaccggttctgccagctcga 256

              
Query: 148 ccg 150
           |||
Sbjct: 257 ccg 259
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>ref|XM_507247.1| PREDICTED Oryza sativa (japonica cultivar-group), P0528B09.47-1
           mRNA
          Length = 1005

 Score =  125 bits (63), Expect = 2e-25
 Identities = 108/123 (87%)
 Strand = Plus / Plus

                                                                       
Query: 28  gatggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactg 87
           |||||||| | | |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 224 gatggggagcacctcgtcgatgctgacgcagtacgacatcgaggaggtccaggaccactg 283

                                                                       
Query: 88  cagctacctattctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcga 147
           |  | ||   |||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 284 cgaccacgccttctcgcagcaggagatcgtgtcgctgtaccaccggttctgccagctcga 343

              
Query: 148 ccg 150
           |||
Sbjct: 344 ccg 346
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>dbj|AK102411.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092P05, full
           insert sequence
          Length = 951

 Score =  125 bits (63), Expect = 2e-25
 Identities = 108/123 (87%)
 Strand = Plus / Plus

                                                                       
Query: 28  gatggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactg 87
           |||||||| | | |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 136 gatggggagcacctcgtcgatgctgacgcagtacgacatcgaggaggtccaggaccactg 195

                                                                       
Query: 88  cagctacctattctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcga 147
           |  | ||   |||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 196 cgaccacgccttctcgcagcaggagatcgtgtcgctgtaccaccggttctgccagctcga 255

              
Query: 148 ccg 150
           |||
Sbjct: 256 ccg 258
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>dbj|AK071719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108H11, full
           insert sequence
          Length = 3643

 Score =  125 bits (63), Expect = 2e-25
 Identities = 108/123 (87%)
 Strand = Plus / Plus

                                                                       
Query: 28  gatggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactg 87
           |||||||| | | |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 218 gatggggagcacctcgtcgatgctgacgcagtacgacatcgaggaggtccaggaccactg 277

                                                                       
Query: 88  cagctacctattctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcga 147
           |  | ||   |||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 278 cgaccacgccttctcgcagcaggagatcgtgtcgctgtaccaccggttctgccagctcga 337

              
Query: 148 ccg 150
           |||
Sbjct: 338 ccg 340
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>dbj|AK059843.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-D12, full
           insert sequence
          Length = 1005

 Score =  125 bits (63), Expect = 2e-25
 Identities = 108/123 (87%)
 Strand = Plus / Plus

                                                                       
Query: 28  gatggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactg 87
           |||||||| | | |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 224 gatggggagcacctcgtcgatgctgacgcagtacgacatcgaggaggtccaggaccactg 283

                                                                       
Query: 88  cagctacctattctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcga 147
           |  | ||   |||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 284 cgaccacgccttctcgcagcaggagatcgtgtcgctgtaccaccggttctgccagctcga 343

              
Query: 148 ccg 150
           |||
Sbjct: 344 ccg 346
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 49/52 (94%)
 Strand = Plus / Plus

                                                                    
Query: 99       tctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcgaccg 150
                ||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 21545207 tctcgcagcaggagatcgtgtcgctgtaccaccggttctgccagctcgaccg 21545258



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                            
Query: 28       gatggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactg 87
                |||||||| | | |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 21545012 gatggggagcacctcgtcgatgctgacgcagtacgacatcgaggaggtccaggaccactg 21545071

                 
Query: 88       c 88
                |
Sbjct: 21545072 c 21545072
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>dbj|AP004703.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0528B09
          Length = 156897

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 49/52 (94%)
 Strand = Plus / Plus

                                                                  
Query: 99     tctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcgaccg 150
              ||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 149202 tctcgcagcaggagatcgtgtcgctgtaccaccggttctgccagctcgaccg 149253



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                          
Query: 28     gatggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactg 87
              |||||||| | | |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 149007 gatggggagcacctcgtcgatgctgacgcagtacgacatcgaggaggtccaggaccactg 149066

               
Query: 88     c 88
              |
Sbjct: 149067 c 149067
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>dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0708B04
          Length = 170523

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 49/52 (94%)
 Strand = Plus / Plus

                                                                
Query: 99   tctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcgaccg 150
            ||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 5381 tctcgcagcaggagatcgtgtcgctgtaccaccggttctgccagctcgaccg 5432



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                        
Query: 28   gatggggaacgcgtcgtcgatgctgacgcagtacgacattgaggaggtgcaggagcactg 87
            |||||||| | | |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 5186 gatggggagcacctcgtcgatgctgacgcagtacgacatcgaggaggtccaggaccactg 5245

             
Query: 88   c 88
            |
Sbjct: 5246 c 5246
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>dbj|AK106976.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-H02, full
            insert sequence
          Length = 2604

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 120/146 (82%), Gaps = 1/146 (0%)
 Strand = Plus / Plus

                                                                        
Query: 414  cagagcaacaaagagagcaagtactaacaaaggtgttggaagaagctgggtacacacggg 473
            ||||| |||||||||||| |||| ||||||| ||  ||||||||||||| |||||| |||
Sbjct: 2215 cagaggaacaaagagagcgagtaataacaaatgtactggaagaagctggatacacaaggg 2274

                                                                        
Query: 474  attccactctatcattagaagattttgtgacgatcatcgaccaccctggcctgaaaatgg 533
            ||| ||| || || || |||||||||   | ||| || || || |||||||| || ||||
Sbjct: 2275 attgcacgctttctttggaagattttaccaggattatagatcatcctggcctaaagatgg 2334

                                      
Query: 534  aggtgggaagtgcccatcgactagtg 559
            |||| ||||||||| || ||||||||
Sbjct: 2335 aggt-ggaagtgcctattgactagtg 2359
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>gb|AY106301.1| Zea mays PCO140890 mRNA sequence
          Length = 812

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                 
Query: 97  attctcgcagcaggagatcgtgtcgctgtacgagcgattctgccagctcgaccg 150
           ||||||||||||||||||||| ||||||||| | || |||||||||||||||||
Sbjct: 106 attctcgcagcaggagatcgtatcgctgtaccaccgcttctgccagctcgaccg 159
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>ref|NM_112728.2| Arabidopsis thaliana calcium ion binding AT3G18430 mRNA, complete
           cds
          Length = 784

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 236 atggttgatggattgaacttcaaggaatttgtt 268
           ||||||||||| |||||||| ||||| ||||||
Sbjct: 308 atggttgatggtttgaactttaaggattttgtt 340
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>ref|XM_533013.2| PREDICTED: Canis familiaris similar to Transcription intermediary
            factor 1-gamma (TIF1-gamma) (RET-fused gene 7 protein)
            (Rfg7 protein) (Tripartite motif protein 33) (LOC475804),
            mRNA
          Length = 3750

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 578  cagcagatgaggatgcagcaa 598
            |||||||||||||||||||||
Sbjct: 1612 cagcagatgaggatgcagcaa 1632
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>gb|AE004159.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 67
            of 251 of the complete chromosome
          Length = 13190

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 228  tgctacgtatggttgatggattgaacttc 256
            |||||||||||||||||| | ||||||||
Sbjct: 7833 tgctacgtatggttgatgcactgaacttc 7805
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>gb|AY091287.1| Arabidopsis thaliana unknown protein (At3g18430) mRNA, complete cds
          Length = 559

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 236 atggttgatggattgaacttcaaggaatttgtt 268
           ||||||||||| |||||||| ||||| ||||||
Sbjct: 208 atggttgatggtttgaactttaaggattttgtt 240
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>gb|AY063789.1| Arabidopsis thaliana unknown protein (At3g18430) mRNA, complete cds
          Length = 730

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 236 atggttgatggattgaacttcaaggaatttgtt 268
           ||||||||||| |||||||| ||||| ||||||
Sbjct: 303 atggttgatggtttgaactttaaggattttgtt 335
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>gb|AC087274.8| Homo sapiens chromosome 8, clone RP11-681J6, complete sequence
          Length = 191786

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 415    agagcaacaaagagagcaagt 435
              |||||||||||||||||||||
Sbjct: 126901 agagcaacaaagagagcaagt 126921
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>emb|BX825707.1|CNS0A51F Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL58ZB04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 693

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 236 atggttgatggattgaacttcaaggaatttgtt 268
           ||||||||||| |||||||| ||||| ||||||
Sbjct: 273 atggttgatggtttgaactttaaggattttgtt 305
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>gb|AY087152.1| Arabidopsis thaliana clone 32274 mRNA, complete sequence
          Length = 776

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 236 atggttgatggattgaacttcaaggaatttgtt 268
           ||||||||||| |||||||| ||||| ||||||
Sbjct: 308 atggttgatggtttgaactttaaggattttgtt 340
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>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome
          Length = 1738505

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 209   aacccgctctcccagaggttg 229
             |||||||||||||||||||||
Sbjct: 32405 aacccgctctcccagaggttg 32385
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>dbj|AB026658.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24
          Length = 88989

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 236   atggttgatggattgaacttcaaggaatttgtt 268
             ||||||||||| |||||||| ||||| ||||||
Sbjct: 44678 atggttgatggtttgaactttaaggattttgtt 44710
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>emb|AL132800.4|CNS01DTM Human chromosome 14 DNA sequence BAC R-80A15 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 185251

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 555   tagtgaagggagaatgcagat 575
             |||||||||||||||||||||
Sbjct: 35112 tagtgaagggagaatgcagat 35132
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>emb|AL845542.9| Mouse DNA sequence from clone RP23-288I12 on chromosome 2, complete
             sequence
          Length = 178976

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 77    caggagcactgcagctaccta 97
             |||||||||||||||||||||
Sbjct: 58816 caggagcactgcagctaccta 58796
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>gb|M15540.1|STMAMYHY S.hygroscopicus alpha-amylase gene, complete cds
          Length = 1842

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 148  ccgcagcgccaagggcttcgtcgcc 172
            |||||||| ||||||||||||||||
Sbjct: 1409 ccgcagcgacaagggcttcgtcgcc 1433
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>gb|AC161474.4| Pan troglodytes BAC clone CH251-488B17 from chromosome 7, complete
              sequence
          Length = 191529

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 449    ttggaagaagctgggtacac 468
              ||||||||||||||||||||
Sbjct: 152749 ttggaagaagctgggtacac 152768
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>ref|XM_612660.2| PREDICTED: Bos taurus similar to Transcription intermediary factor
            1-gamma (TIF1-gamma) (RET-fused gene 7 protein) (Rfg7
            protein) (Tripartite motif protein 33) (LOC533296), mRNA
          Length = 4076

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 578  cagcagatgaggatgcagca 597
            ||||||||||||||||||||
Sbjct: 1963 cagcagatgaggatgcagca 1982
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>gb|AC101787.11| Mus musculus chromosome 1, clone RP24-147F6, complete sequence
          Length = 172617

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 415   agagcaacaaagagagcaag 434
             ||||||||||||||||||||
Sbjct: 41629 agagcaacaaagagagcaag 41610
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>gb|AC146002.2| Pan troglodytes BAC clone RP43-153B17 from 7, complete sequence
          Length = 169542

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 449    ttggaagaagctgggtacac 468
              ||||||||||||||||||||
Sbjct: 131462 ttggaagaagctgggtacac 131481
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>gb|AC002127.1| Homo sapiens BAC clone CTA-305H12 from 7, complete sequence
          Length = 144165

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 449    ttggaagaagctgggtacac 468
              ||||||||||||||||||||
Sbjct: 137149 ttggaagaagctgggtacac 137130
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>emb|AL158154.28| Human DNA sequence from clone RP11-383M4 on chromosome 9 Contains two
             novel genes and three putative novel pseudogenes, complete
             sequence
          Length = 189319

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   ggattgaacttcaaggaatt 264
             ||||||||||||||||||||
Sbjct: 85445 ggattgaacttcaaggaatt 85464
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>gb|AC162899.5| Mus musculus chromosome 1, clone RP24-222G3, complete sequence
          Length = 176916

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 415    agagcaacaaagagagcaag 434
              ||||||||||||||||||||
Sbjct: 163790 agagcaacaaagagagcaag 163809
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>gb|U39674.1| Caenorhabditis elegans cosmid C06E2, complete sequence
          Length = 47743

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 498   ttgtgacgatcatcgaccac 517
             ||||||||||||||||||||
Sbjct: 43044 ttgtgacgatcatcgaccac 43063
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>gb|AC083813.29| Homo sapiens 12q BAC RP11-304C10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 216123

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 556    agtgaagggagaatgcagatttcagcag 583
              |||| |||||||||||| ||||||||||
Sbjct: 116443 agtggagggagaatgcaaatttcagcag 116416
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>gb|AC009708.11| Homo sapiens chromosome 8, clone RP11-318G5, complete sequence
          Length = 220215

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   atgtttaaggtgtatgacat 342
             ||||||||||||||||||||
Sbjct: 71652 atgtttaaggtgtatgacat 71671
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>gb|DQ027001.1| Homo sapiens ribonucleotide reductase M2 B (TP53 inducible) (RRM2B)
             gene, complete cds
          Length = 37983

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   atgtttaaggtgtatgacat 342
             ||||||||||||||||||||
Sbjct: 14508 atgtttaaggtgtatgacat 14527
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>gb|AC016748.3| Homo sapiens BAC clone RP11-494M7 from 2, complete sequence
          Length = 182776

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 556   agtgaagggagaatgcagatttcagcag 583
             |||| |||||||||||| ||||||||||
Sbjct: 38168 agtggagggagaatgcaaatttcagcag 38141
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 172     cgaggacgagttcctctcca 191
               ||||||||||||||||||||
Sbjct: 2936848 cgaggacgagttcctctcca 2936867
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>gb|AE004726.1| Pseudomonas aeruginosa PAO1, section 287 of 529 of the complete
            genome
          Length = 10681

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 154  cgccaagggcttcgtcgccg 173
            ||||||||||||||||||||
Sbjct: 8144 cgccaagggcttcgtcgccg 8125
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>dbj|AP002907.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB431C1
          Length = 98146

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   atgtttaaggtgtatgacat 342
             ||||||||||||||||||||
Sbjct: 47946 atgtttaaggtgtatgacat 47927
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>emb|AL670680.6| Mouse DNA sequence from clone RP23-314D24 on chromosome 4, complete
              sequence
          Length = 150897

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 593    cagcaagctctcagtcatgtctgatgaa 620
              |||||||||| |||||||||||| ||||
Sbjct: 142625 cagcaagctcacagtcatgtctgctgaa 142652


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,850,673
Number of Sequences: 3902068
Number of extensions: 4850673
Number of successful extensions: 92730
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92530
Number of HSP's gapped (non-prelim): 194
length of query: 622
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 599
effective length of database: 17,143,297,704
effective search space: 10268835324696
effective search space used: 10268835324696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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