ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baaln10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472314.1| Oryza sativa (japonica cultivar-group), predic... 163 9e-37
2emb|AL606621.3|OSJN00054 Oryza sativa genomic DNA, chromosome 4,... 66 2e-07
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 66 2e-07
4gb|AY111233.1| Zea mays CL5635_1 mRNA sequence 56 1e-04
5gb|AC022486.4|AC022486 Homo sapiens BAC clone RP11-569J3 from Y,... 46 0.14
6gb|AC007379.2|AC007379 Homo sapiens BAC clone RP11-143C1 from Y,... 46 0.14
7ref|NG_004636.1| Homo sapiens chromosome Y palindromes P4 and P5... 46 0.14
8emb|AL732325.6| Human DNA sequence from clone RP11-692N21 on chr... 44 0.56
9gb|AC166487.6| Mus musculus chromosome 1, clone RP23-298A7, comp... 42 2.2
10gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, c... 42 2.2
11ref|XM_842773.1| Leishmania major strain Friedlin hypothetical p... 42 2.2
12gb|AC121986.2| Mus musculus BAC clone RP24-293I7 from 10, comple... 42 2.2
13emb|AL023801.1|HS786D3 Human DNA sequence from clone RP4-786D3 o... 42 2.2
14gb|AC158753.8| Mus musculus chromosome 5, clone RP23-301E24, com... 42 2.2
15gb|AC152819.6| Mus musculus BAC clone RP24-572P24 from chromosom... 42 2.2
16gb|AC158504.10| Medicago truncatula clone mth2-151m4, complete s... 42 2.2
17gb|AC158760.4| Mus musculus chromosome 5, clone RP23-319E24, com... 42 2.2
18gb|AC010546.10| Homo sapiens chromosome 16 clone RP11-50O21, com... 42 2.2
19gb|AC006511.5| Homo sapiens 12 BAC RPCI11-69M1 (Roswell Park Can... 42 2.2
20dbj|AP003068.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.2
21dbj|AP001873.3| Homo sapiens genomic DNA, chromosome 11q clone:C... 42 2.2
22gb|AC137621.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.7
23gb|AC137616.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.7
24gb|AC132314.3| Mus musculus BAC clone RP24-233C4 from chromosome... 40 8.7
25gb|AE017244.1| Mycoplasma hyopneumoniae 7448, complete genome 40 8.7
26gb|AE017243.1| Mycoplasma hyopneumoniae J, complete genome 40 8.7
27gb|AC106745.4| Homo sapiens chromosome 16 clone RP11-134D3, comp... 40 8.7
28emb|AL592287.4| Human DNA sequence from clone RP11-107P1 on chro... 40 8.7
29emb|AL391425.25| Human DNA sequence from clone RP11-323P17 on ch... 40 8.7
30emb|Z99114.2|BSUB0011 Bacillus subtilis complete genome (section... 40 8.7
31gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 8.7
32gb|BC040653.2| Homo sapiens cDNA clone IMAGE:4797120 40 8.7
33emb|BX470157.6| Zebrafish DNA sequence from clone CH211-119P14 i... 40 8.7
34gb|AC092748.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 8.7
35emb|BX323465.7| Zebrafish DNA sequence from clone DKEYP-9C6 in l... 40 8.7
36gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold 40 8.7
37dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
38dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
39gb|AC116104.7| Mus musculus chromosome 5, clone RP23-18K20, comp... 40 8.7
40gb|AC122152.3| Oryctolagus cuniculus clone LB1-297M16, complete ... 40 8.7
41gb|AC011739.7| Homo sapiens BAC clone RP11-68H19 from 2, complet... 40 8.7
42dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 8.7
43emb|BX544891.6| Mouse DNA sequence from clone RP23-244I22 on chr... 40 8.7
44gb|AC002476.1|AC002476 Human PAC clone RP1-318C15 from Xq23, com... 40 8.7
45emb|CT737399.2| Pan troglodytes chromosome X clone CH251-213G08 ... 40 8.7
46gb|AC105159.15| Mus musculus chromosome 18, clone RP24-503L15, c... 40 8.7
47dbj|AP000464.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 8.7
48dbj|AP002991.3| Homo sapiens genomic DNA, chromosome 11 clone:CT... 40 8.7
49gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome 40 8.7
50gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.7
51dbj|AB017652.1| Homo sapiens genomic DNA, chromosome 11q23.2, cl... 40 8.7
52gb|AF020713.1|AF020713 Bacteriophage SPBc2 complete genome 40 8.7
53emb|AL034384.1|HSMTM0 Human chromosome Xq28, cosmid clones 7H3, ... 40 8.7 
>ref|XM_472314.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 831

 Score =  163 bits (82), Expect = 9e-37
 Identities = 181/214 (84%)
 Strand = Plus / Plus

                                                                       
Query: 408 accaaaagaatacgtcgatccatgggactatacccatagcgactatcctataactctccc 467
           |||||||||||| || || ||||||||||||||||| || ||||||||| | ||||||||
Sbjct: 228 accaaaagaatatgttgaaccatgggactatacccacagtgactatcctgttactctccc 287

                                                                       
Query: 468 acttaggaggccctactctggagatcctgagattcttgatgaagaggagtttggagagaa 527
           ||| ||||| || || |||||||||||||| |||||| ||||||||||||||||||||  
Sbjct: 288 actgaggagaccgtattctggagatcctgaaattcttaatgaagaggagtttggagagtc 347

                                                                       
Query: 528 ttctgccagcagagctcactatggcgaatttacggcagcagatgaacttggattaatgga 587
           |||||||| | |||| ||  |||| ||||| ||  ||||||| ||||||||| ||||| |
Sbjct: 348 ttctgccaccggagcccaagatggtgaattaaccacagcagaagaacttggactaatgca 407

                                             
Query: 588 ttggtccgacacaccacagttgctcctcttccag 621
           | |||| |||| | ||||||||||  ||||||||
Sbjct: 408 tcggtcagacaaagcacagttgcttttcttccag 441



 Score =  101 bits (51), Expect = 3e-18
 Identities = 141/171 (82%)
 Strand = Plus / Plus

                                                                       
Query: 207 ggagcctgctgaggagagcaaggatgatatcattgacaaggagttgttgatgaaactcaa 266
           |||||| |||||||| ||||||||||| | | | || || ||| |||||||||| || ||
Sbjct: 21  ggagccggctgaggaaagcaaggatgaaaccgtagataaagagctgttgatgaagcttaa 80

                                                                       
Query: 267 gacatcgcagatcaccgatccctttggaagaagacccaagattgagaaaaaagaaatcaa 326
           ||||||||||| ||| ||||||||||  |||| |   |||| ||||||||| |||||   
Sbjct: 81  gacatcgcagagcacagatccctttgtgagaaaatttaagactgagaaaaaggaaatgcg 140

                                                              
Query: 327 tactcaggttgcatttgggcaagggaactcttcctatgcaagatcttttcc 377
           |||||| ||||||||||| || |||||||| || ||||||||||| |||||
Sbjct: 141 tactcaagttgcatttggacaggggaactcgtcgtatgcaagatcatttcc 191
to top
>emb|AL606621.3|OSJN00054 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072K14,
             complete sequence
          Length = 139855

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                         
Query: 432   ggactatacccatagcgactatcctataactctcccacttaggaggccctactctggaga 491
             |||||||||||| || ||||||||| | ||||||||||| ||||| || || ||||||||
Sbjct: 61869 ggactatacccacagtgactatcctgttactctcccactgaggagaccgtattctggaga 61810

                  
Query: 492   tcctg 496
             |||||
Sbjct: 61809 tcctg 61805



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 74/88 (84%)
 Strand = Plus / Minus

                                                                         
Query: 499   attcttgatgaagaggagtttggagagaattctgccagcagagctcactatggcgaattt 558
             |||||| ||||||||||||||||||||  |||||||| | |||| ||  |||| ||||| 
Sbjct: 61724 attcttaatgaagaggagtttggagagtcttctgccaccggagcccaagatggtgaatta 61665

                                         
Query: 559   acggcagcagatgaacttggattaatgg 586
             ||  ||||||| ||||||||| ||||||
Sbjct: 61664 accacagcagaagaacttggactaatgg 61637



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                
Query: 327   tactcaggttgcatttgggcaagggaactcttcctatgcaagatcttttcc 377
             |||||| ||||||||||| || |||||||| || ||||||||||| |||||
Sbjct: 62271 tactcaagttgcatttggacaggggaactcgtcgtatgcaagatcatttcc 62221



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                         
Query: 207   ggagcctgctgaggagagcaaggatgatatcattgacaaggagttgttgatgaaactcaa 266
             |||||| |||||||| ||||||||||| | | | || || ||| |||||||||| || ||
Sbjct: 63248 ggagccggctgaggaaagcaaggatgaaaccgtagataaagagctgttgatgaagcttaa 63189

                       
Query: 267   gacatcgcag 276
             ||||||||||
Sbjct: 63188 gacatcgcag 63179
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                            
Query: 432      ggactatacccatagcgactatcctataactctcccacttaggaggccctactctggaga 491
                |||||||||||| || ||||||||| | ||||||||||| ||||| || || ||||||||
Sbjct: 19410603 ggactatacccacagtgactatcctgttactctcccactgaggagaccgtattctggaga 19410544

                     
Query: 492      tcctg 496
                |||||
Sbjct: 19410543 tcctg 19410539



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 74/88 (84%)
 Strand = Plus / Minus

                                                                            
Query: 499      attcttgatgaagaggagtttggagagaattctgccagcagagctcactatggcgaattt 558
                |||||| ||||||||||||||||||||  |||||||| | |||| ||  |||| ||||| 
Sbjct: 19410458 attcttaatgaagaggagtttggagagtcttctgccaccggagcccaagatggtgaatta 19410399

                                            
Query: 559      acggcagcagatgaacttggattaatgg 586
                ||  ||||||| ||||||||| ||||||
Sbjct: 19410398 accacagcagaagaacttggactaatgg 19410371



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                   
Query: 327      tactcaggttgcatttgggcaagggaactcttcctatgcaagatcttttcc 377
                |||||| ||||||||||| || |||||||| || ||||||||||| |||||
Sbjct: 19411005 tactcaagttgcatttggacaggggaactcgtcgtatgcaagatcatttcc 19410955



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                            
Query: 207      ggagcctgctgaggagagcaaggatgatatcattgacaaggagttgttgatgaaactcaa 266
                |||||| |||||||| ||||||||||| | | | || || ||| |||||||||| || ||
Sbjct: 19411982 ggagccggctgaggaaagcaaggatgaaaccgtagataaagagctgttgatgaagcttaa 19411923

                          
Query: 267      gacatcgcag 276
                ||||||||||
Sbjct: 19411922 gacatcgcag 19411913
to top
>gb|AY111233.1| Zea mays CL5635_1 mRNA sequence
          Length = 659

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                       
Query: 472 aggaggccctactctggagatcctgagattcttgatgaagaggagtttggagagaattct 531
           |||| ||||||||||||| ||||||| ||||| ||||| || || ||||||||   ||||
Sbjct: 626 aggaagccctactctggaaatcctgaaattctggatgaggaagaatttggagaatcttct 567

                   
Query: 532 gccagcag 539
           ||||||||
Sbjct: 566 gccagcag 559
to top
>gb|AC022486.4|AC022486 Homo sapiens BAC clone RP11-569J3 from Y, complete sequence
          Length = 156357

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 477   gccctactctggagatcctgaga 499
             |||||||||||||||||||||||
Sbjct: 17478 gccctactctggagatcctgaga 17500
to top
>gb|AC007379.2|AC007379 Homo sapiens BAC clone RP11-143C1 from Y, complete sequence
          Length = 174082

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 477    gccctactctggagatcctgaga 499
              |||||||||||||||||||||||
Sbjct: 120894 gccctactctggagatcctgaga 120872
to top
>ref|NG_004636.1| Homo sapiens chromosome Y palindromes P4 and P5 (P4-P5@) on chromosome Y
          Length = 1351786

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 477     gccctactctggagatcctgaga 499
               |||||||||||||||||||||||
Sbjct: 1273895 gccctactctggagatcctgaga 1273873



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 477     gccctactctggagatcctgaga 499
               |||||||||||||||||||||||
Sbjct: 1014322 gccctactctggagatcctgaga 1014344
to top
>emb|AL732325.6| Human DNA sequence from clone RP11-692N21 on chromosome X Contains part
             of the SH3KBP1 gene for SH3-domain kinase binding protein
             1 (CIN85), complete sequence
          Length = 96764

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 240   tgacaaggagttgttgatgaaa 261
             ||||||||||||||||||||||
Sbjct: 59633 tgacaaggagttgttgatgaaa 59612
to top
>gb|AC166487.6| Mus musculus chromosome 1, clone RP23-298A7, complete sequence
          Length = 187404

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 599    caccacagttgctcctcttccagtt 623
              |||||||||| ||||||||||||||
Sbjct: 168494 caccacagtttctcctcttccagtt 168518
to top
>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 51     tgaacaaggttcttgcgtttg 71
              |||||||||||||||||||||
Sbjct: 876327 tgaacaaggttcttgcgtttg 876347
to top
>ref|XM_842773.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0844)
          partial mRNA
          Length = 2097

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 51 tgaacaaggttcttgcgtttg 71
          |||||||||||||||||||||
Sbjct: 92 tgaacaaggttcttgcgtttg 72
to top
>gb|AC121986.2| Mus musculus BAC clone RP24-293I7 from 10, complete sequence
          Length = 182686

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 304   aagattgagaaaaaagaaatcaata 328
             ||||| |||||||||||||||||||
Sbjct: 58452 aagatagagaaaaaagaaatcaata 58476
to top
>emb|AL023801.1|HS786D3 Human DNA sequence from clone RP4-786D3 on chromosome 22q13.31-33,
            complete sequence
          Length = 35469

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 507  tgaagaggagtttggagagaa 527
            |||||||||||||||||||||
Sbjct: 6162 tgaagaggagtttggagagaa 6182
to top
>gb|AC158753.8| Mus musculus chromosome 5, clone RP23-301E24, complete sequence
          Length = 190368

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 222    gagcaaggatgatatcattga 242
              |||||||||||||||||||||
Sbjct: 183279 gagcaaggatgatatcattga 183299
to top
>gb|AC152819.6| Mus musculus BAC clone RP24-572P24 from chromosome 10, complete
             sequence
          Length = 185665

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 304   aagattgagaaaaaagaaatcaata 328
             ||||| |||||||||||||||||||
Sbjct: 36551 aagatagagaaaaaagaaatcaata 36527
to top
>gb|AC158504.10| Medicago truncatula clone mth2-151m4, complete sequence
          Length = 117136

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 307   attgagaaaaaagaaatcaat 327
             |||||||||||||||||||||
Sbjct: 96780 attgagaaaaaagaaatcaat 96800
to top
>gb|AC158760.4| Mus musculus chromosome 5, clone RP23-319E24, complete sequence
          Length = 191682

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 222    gagcaaggatgatatcattga 242
              |||||||||||||||||||||
Sbjct: 172795 gagcaaggatgatatcattga 172775
to top
>gb|AC010546.10| Homo sapiens chromosome 16 clone RP11-50O21, complete sequence
          Length = 181955

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 304    aagattgagaaaaaagaaatc 324
              |||||||||||||||||||||
Sbjct: 125213 aagattgagaaaaaagaaatc 125233
to top
>gb|AC006511.5| Homo sapiens 12 BAC RPCI11-69M1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 186321

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 521    gagagaattctgccagcagag 541
              |||||||||||||||||||||
Sbjct: 179165 gagagaattctgccagcagag 179145
to top
>dbj|AP003068.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-399J13, complete
              sequence
          Length = 187934

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 521    gagagaattctgccagcagag 541
              |||||||||||||||||||||
Sbjct: 121814 gagagaattctgccagcagag 121834
to top
>dbj|AP001873.3| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2011H1, complete
             sequence
          Length = 44621

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 521   gagagaattctgccagcagag 541
             |||||||||||||||||||||
Sbjct: 16570 gagagaattctgccagcagag 16590
to top
>gb|AC137621.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0111O13, complete sequence
          Length = 126332

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 495   tgagattcttgatgaagagg 514
             ||||||||||||||||||||
Sbjct: 19099 tgagattcttgatgaagagg 19080
to top
>gb|AC137616.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0069I13, complete sequence
          Length = 94252

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 495   tgagattcttgatgaagagg 514
             ||||||||||||||||||||
Sbjct: 55897 tgagattcttgatgaagagg 55878
to top
>gb|AC132314.3| Mus musculus BAC clone RP24-233C4 from chromosome 18, complete sequence
          Length = 156356

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 525    gaattctgccagcagagctc 544
              ||||||||||||||||||||
Sbjct: 155664 gaattctgccagcagagctc 155683
to top
>gb|AE017244.1| Mycoplasma hyopneumoniae 7448, complete genome
          Length = 920079

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 304    aagattgagaaaaaagaaatcaat 327
              ||||||||||||||| ||||||||
Sbjct: 285401 aagattgagaaaaaataaatcaat 285378
to top
>gb|AE017243.1| Mycoplasma hyopneumoniae J, complete genome
          Length = 897405

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 304    aagattgagaaaaaagaaatcaat 327
              ||||||||||||||| ||||||||
Sbjct: 271913 aagattgagaaaaaataaatcaat 271890
to top
>gb|AC106745.4| Homo sapiens chromosome 16 clone RP11-134D3, complete sequence
          Length = 164238

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 521    gagagaattctgccagcaga 540
              ||||||||||||||||||||
Sbjct: 128374 gagagaattctgccagcaga 128355
to top
>emb|AL592287.4| Human DNA sequence from clone RP11-107P1 on chromosome 1, complete
             sequence
          Length = 189385

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   tgaagaaggaaatagatggc 120
             ||||||||||||||||||||
Sbjct: 11525 tgaagaaggaaatagatggc 11506
to top
>emb|AL391425.25| Human DNA sequence from clone RP11-323P17 on chromosome 10 Contains a
              novel gene and the 5' end of the WDR11 gene for WD repeat
              domain 11, complete sequence
          Length = 158950

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    ggctcccttccagcccgtcc 137
              ||||||||||||||||||||
Sbjct: 101153 ggctcccttccagcccgtcc 101134
to top
>emb|Z99114.2|BSUB0011 Bacillus subtilis complete genome (section 11 of 21): from 2014895 to
              2207855
          Length = 192961

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 313    aaaaaagaaatcaatactca 332
              ||||||||||||||||||||
Sbjct: 179056 aaaaaagaaatcaatactca 179037
to top
>gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0032N04, from chromosome 10, complete sequence
          Length = 159445

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 495   tgagattcttgatgaagagg 514
             ||||||||||||||||||||
Sbjct: 98969 tgagattcttgatgaagagg 98950
to top
>gb|BC040653.2| Homo sapiens cDNA clone IMAGE:4797120
          Length = 2133

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 309 tgagaaaaaagaaatcaata 328
           ||||||||||||||||||||
Sbjct: 714 tgagaaaaaagaaatcaata 695
to top
>emb|BX470157.6| Zebrafish DNA sequence from clone CH211-119P14 in linkage group 14,
              complete sequence
          Length = 201228

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 310    gagaaaaaagaaatcaatac 329
              ||||||||||||||||||||
Sbjct: 106882 gagaaaaaagaaatcaatac 106901
to top
>gb|AC092748.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0019N10, from chromosome 10, complete sequence
          Length = 192267

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 495    tgagattcttgatgaagagg 514
              ||||||||||||||||||||
Sbjct: 133411 tgagattcttgatgaagagg 133430
to top
>emb|BX323465.7| Zebrafish DNA sequence from clone DKEYP-9C6 in linkage group 14,
             complete sequence
          Length = 174182

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   gagaaaaaagaaatcaatac 329
             ||||||||||||||||||||
Sbjct: 41315 gagaaaaaagaaatcaatac 41334
to top
>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 604     cagttgctcctcttccagtt 623
               ||||||||||||||||||||
Sbjct: 1611629 cagttgctcctcttccagtt 1611648
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 495      tgagattcttgatgaagagg 514
                ||||||||||||||||||||
Sbjct: 11780908 tgagattcttgatgaagagg 11780889
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 495     tgagattcttgatgaagagg 514
               ||||||||||||||||||||
Sbjct: 2186668 tgagattcttgatgaagagg 2186649
to top
>gb|AC116104.7| Mus musculus chromosome 5, clone RP23-18K20, complete sequence
          Length = 210459

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 92    agagtaacgtgaagaaggaaatagatgg 119
             ||||||||  ||||||||||||||||||
Sbjct: 52857 agagtaacaggaagaaggaaatagatgg 52884
to top
>gb|AC122152.3| Oryctolagus cuniculus clone LB1-297M16, complete sequence
          Length = 189392

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 604   cagttgctcctcttccagtt 623
             ||||||||||||||||||||
Sbjct: 63426 cagttgctcctcttccagtt 63445
to top
>gb|AC011739.7| Homo sapiens BAC clone RP11-68H19 from 2, complete sequence
          Length = 171811

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 602   cacagttgctcctcttccag 621
             ||||||||||||||||||||
Sbjct: 43184 cacagttgctcctcttccag 43165
to top
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 392     cggcagcgccaaaagcacca 411
               ||||||||||||||||||||
Sbjct: 6333102 cggcagcgccaaaagcacca 6333121
to top
>emb|BX544891.6| Mouse DNA sequence from clone RP23-244I22 on chromosome X, complete
              sequence
          Length = 185315

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 318    agaaatcaatactcaggttg 337
              ||||||||||||||||||||
Sbjct: 132627 agaaatcaatactcaggttg 132646
to top
>gb|AC002476.1|AC002476 Human PAC clone RP1-318C15 from Xq23, complete sequence
          Length = 147102

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 309  tgagaaaaaagaaatcaata 328
            ||||||||||||||||||||
Sbjct: 1390 tgagaaaaaagaaatcaata 1409
to top
>emb|CT737399.2| Pan troglodytes chromosome X clone CH251-213G08 map Xq28, complete
              sequence
          Length = 144757

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 521    gagagaattctgccagcaga 540
              ||||||||||||||||||||
Sbjct: 126972 gagagaattctgccagcaga 126953
to top
>gb|AC105159.15| Mus musculus chromosome 18, clone RP24-503L15, complete sequence
          Length = 149806

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 525   gaattctgccagcagagctc 544
             ||||||||||||||||||||
Sbjct: 15996 gaattctgccagcagagctc 16015
to top
>dbj|AP000464.2| Homo sapiens genomic DNA, chromosome 11q, clone:P221, complete sequence
          Length = 68582

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 311   agaaaaaagaaatcaatact 330
             ||||||||||||||||||||
Sbjct: 65577 agaaaaaagaaatcaatact 65596
to top
>dbj|AP002991.3| Homo sapiens genomic DNA, chromosome 11 clone:CTC-774J1, complete
             sequence
          Length = 167901

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 311   agaaaaaagaaatcaatact 330
             ||||||||||||||||||||
Sbjct: 88227 agaaaaaagaaatcaatact 88246
to top
>gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome
          Length = 892758

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 304    aagattgagaaaaaagaaatcaat 327
              ||||||||||||||| ||||||||
Sbjct: 169974 aagattgagaaaaaataaatcaat 169997
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 495      tgagattcttgatgaagagg 514
                ||||||||||||||||||||
Sbjct: 11788248 tgagattcttgatgaagagg 11788229
to top
>dbj|AB017652.1| Homo sapiens genomic DNA, chromosome 11q23.2, clone:P221, complete
            sequence
          Length = 68582

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 311  agaaaaaagaaatcaatact 330
            ||||||||||||||||||||
Sbjct: 3006 agaaaaaagaaatcaatact 2987
to top
>gb|AF020713.1|AF020713 Bacteriophage SPBc2 complete genome
          Length = 134416

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 313   aaaaaagaaatcaatactca 332
             ||||||||||||||||||||
Sbjct: 91695 aaaaaagaaatcaatactca 91714
to top
>emb|AL034384.1|HSMTM0 Human chromosome Xq28, cosmid clones 7H3, 14D7, C1230, 11E7, F1096,
             A12197, 12G8, A09100; complete sequence bases 1..217657
          Length = 217657

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 521   gagagaattctgccagcaga 540
             ||||||||||||||||||||
Sbjct: 40401 gagagaattctgccagcaga 40382


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,242,877
Number of Sequences: 3902068
Number of extensions: 6242877
Number of successful extensions: 119965
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119435
Number of HSP's gapped (non-prelim): 529
length of query: 636
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 613
effective length of database: 17,143,297,704
effective search space: 10508841492552
effective search space used: 10508841492552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top