ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baaln03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK073928.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073L20, full insert sequence Length = 1098 Score = 361 bits (182), Expect = 2e-96 Identities = 332/382 (86%) Strand = Plus / Plus Query: 152 aatcatgagctcccatcgcgtgaagtggaatgaggacaatctgtatgaaattgaatcaaa 211 |||||||||||| | ||| |||||||||||||| ||||| |||||||| ||||||||||| Sbjct: 235 aatcatgagctctcgtcgtgtgaagtggaatgaagacaacctgtatgagattgaatcaaa 294 Query: 212 caagccagtgaggcagaagataaccgagcccaagacaccgtatcaccctatgatggatga 271 || || || |||||||||||||| ||||| |||||||| |||||||||||| | ||||| Sbjct: 295 taaacctgttaggcagaagataactgagcctaagacaccatatcaccctatggtagatga 354 Query: 272 agatgggtcactatcaccaacacgccctttcgacaagtgtctagatgagactgttagtgc 331 ||||||||| | |||||||| || ||||| ||||||||||| ||||||||||||| ||| Sbjct: 355 tgatgggtcattgtcaccaacgcgtccttttgacaagtgtctggatgagactgttaatgc 414 Query: 332 tgaagctatattcactgctttaaatggtgtggcctcttcaagtaaaaatgattcaaagga 391 ||||||||| || |||||||||||||||||||| |||||||| |||| |||| ||||||| Sbjct: 415 tgaagctattttaactgctttaaatggtgtggcttcttcaagcaaaactgatccaaagga 474 Query: 392 tgatgagtgggcatcctcagatgatgatgcagatgccatggaacaggatggtgactcaga 451 ||||| |||||||||||||||||||||||||||||||||||||| |||| ||| |||| Sbjct: 475 tgatggttgggcatcctcagatgatgatgcagatgccatggaacaagatgatgatccaga 534 Query: 452 agctgacaaatcatcagtgagtttcaaggagcatcgccgcaatcactacgatgaataccg 511 |||||| || ||| | ||||||||||||| ||||| || |||||| ||||||| || Sbjct: 535 agctgaaaagtcaagactgagtttcaaggaacatcgtcgtgctcactatgatgaattcct 594 Query: 512 caaggttaaggaactgatgcgc 533 |||||| ||||| ||||||||| Sbjct: 595 caaggtgaaggagctgatgcgc 616
>gb|AY596561.1| Saccharum officinarum clone SCRFLR1012F07, complete sequence Length = 1020 Score = 305 bits (154), Expect = 8e-80 Identities = 315/368 (85%), Gaps = 3/368 (0%) Strand = Plus / Minus Query: 171 gtgaagtggaatgaggacaatctgtatgaaattgaatcaaacaagccagtgaggcagaag 230 |||||||||||||||||||||||||| |||||||| |||||||| || |||||||||||| Sbjct: 789 gtgaagtggaatgaggacaatctgtacgaaattgagtcaaacaaaccggtgaggcagaag 730 Query: 231 ataaccgagcccaagacaccgtatcaccctatgatggatgaagatgggtcactatcacca 290 ||||| ||||| |||||||| |||||||||||||| ||||| ||||||||||| || ||| Sbjct: 729 ataacagagccaaagacaccatatcaccctatgatagatgatgatgggtcactgtcgcca 670 Query: 291 acacgccctttcgacaagtgtctagatgagactgttagtgctgaagctatattcactgct 350 ||||| ||||||||||| ||||| ||||||||||| ||||||||||| || | || Sbjct: 669 acacgtcctttcgacaaatgtctcgatgagactgtccaagctgaagctatcttagcggcc 610 Query: 351 ttaaatggtgtggcctct---tcaagtaaaaatgattcaaaggatgatgagtgggcatcc 407 |||||||||||||| ||| ||||| || | ||||||||||||||| |||| || Sbjct: 609 ttaaatggtgtggcttcttcatcaagcaatagcaattcaaaggatgatggttggggattg 550 Query: 408 tcagatgatgatgcagatgccatggaacaggatggtgactcagaagctgacaaatcatca 467 |||||||||||| |||||||||| ||||| |||| |||| |||||||||||| | || | Sbjct: 549 tcagatgatgatacagatgccatagaacaagatgatgacccagaagctgacacaacaaga 490 Query: 468 gtgagtttcaaggagcatcgccgcaatcactacgatgaataccgcaaggttaaggaactg 527 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 489 ttgagtttcaaggagcatcgccgtgcccactacgatgagtaccgcaaggttaaggaactg 430 Query: 528 atgcgcac 535 ||| |||| Sbjct: 429 atgagcac 422
>gb|AC093953.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OJ1057_C01, complete sequence Length = 142752 Score = 202 bits (102), Expect = 8e-49 Identities = 150/166 (90%) Strand = Plus / Plus Query: 276 gggtcactatcaccaacacgccctttcgacaagtgtctagatgagactgttagtgctgaa 335 |||||| | |||||||| || ||||| ||||||||||| ||||||||||||| ||||||| Sbjct: 89542 gggtcattgtcaccaacgcgtccttttgacaagtgtctggatgagactgttaatgctgaa 89601 Query: 336 gctatattcactgctttaaatggtgtggcctcttcaagtaaaaatgattcaaaggatgat 395 ||||| || |||||||||||||||||||| |||||||| |||| |||| ||||||||||| Sbjct: 89602 gctattttaactgctttaaatggtgtggcttcttcaagcaaaactgatccaaaggatgat 89661 Query: 396 gagtgggcatcctcagatgatgatgcagatgccatggaacaggatg 441 | |||||||||||||||||||||||||||||||||||||| |||| Sbjct: 89662 ggttgggcatcctcagatgatgatgcagatgccatggaacaagatg 89707 Score = 109 bits (55), Expect = 9e-21 Identities = 94/107 (87%) Strand = Plus / Plus Query: 171 gtgaagtggaatgaggacaatctgtatgaaattgaatcaaacaagccagtgaggcagaag 230 |||||||||||||| ||||| |||||||| ||||||||||| || || || ||||||||| Sbjct: 89340 gtgaagtggaatgaagacaacctgtatgagattgaatcaaataaacctgttaggcagaag 89399 Query: 231 ataaccgagcccaagacaccgtatcaccctatgatggatgaagatgg 277 ||||| ||||| |||||||| |||||||||||| | ||||| ||||| Sbjct: 89400 ataactgagcctaagacaccatatcaccctatggtagatgatgatgg 89446 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Plus Query: 448 cagaagctgacaaatcatcagtgagtttcaaggagcatcgccgcaatcactacgatgaat 507 |||||||||| || ||| | ||||||||||||| ||||| || |||||| ||||||| Sbjct: 90513 cagaagctgaaaagtcaagactgagtttcaaggaacatcgtcgtgctcactatgatgaat 90572 Query: 508 accgcaaggttaaggaactgatgcgc 533 || |||||| ||||| ||||||||| Sbjct: 90573 tcctcaaggtgaaggagctgatgcgc 90598
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 202 bits (102), Expect = 8e-49 Identities = 150/166 (90%) Strand = Plus / Plus Query: 276 gggtcactatcaccaacacgccctttcgacaagtgtctagatgagactgttagtgctgaa 335 |||||| | |||||||| || ||||| ||||||||||| ||||||||||||| ||||||| Sbjct: 13406079 gggtcattgtcaccaacgcgtccttttgacaagtgtctggatgagactgttaatgctgaa 13406138 Query: 336 gctatattcactgctttaaatggtgtggcctcttcaagtaaaaatgattcaaaggatgat 395 ||||| || |||||||||||||||||||| |||||||| |||| |||| ||||||||||| Sbjct: 13406139 gctattttaactgctttaaatggtgtggcttcttcaagcaaaactgatccaaaggatgat 13406198 Query: 396 gagtgggcatcctcagatgatgatgcagatgccatggaacaggatg 441 | |||||||||||||||||||||||||||||||||||||| |||| Sbjct: 13406199 ggttgggcatcctcagatgatgatgcagatgccatggaacaagatg 13406244 Score = 109 bits (55), Expect = 9e-21 Identities = 94/107 (87%) Strand = Plus / Plus Query: 171 gtgaagtggaatgaggacaatctgtatgaaattgaatcaaacaagccagtgaggcagaag 230 |||||||||||||| ||||| |||||||| ||||||||||| || || || ||||||||| Sbjct: 13405877 gtgaagtggaatgaagacaacctgtatgagattgaatcaaataaacctgttaggcagaag 13405936 Query: 231 ataaccgagcccaagacaccgtatcaccctatgatggatgaagatgg 277 ||||| ||||| |||||||| |||||||||||| | ||||| ||||| Sbjct: 13405937 ataactgagcctaagacaccatatcaccctatggtagatgatgatgg 13405983 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Plus Query: 448 cagaagctgacaaatcatcagtgagtttcaaggagcatcgccgcaatcactacgatgaat 507 |||||||||| || ||| | ||||||||||||| ||||| || |||||| ||||||| Sbjct: 13407050 cagaagctgaaaagtcaagactgagtttcaaggaacatcgtcgtgctcactatgatgaat 13407109 Query: 508 accgcaaggttaaggaactgatgcgc 533 || |||||| ||||| ||||||||| Sbjct: 13407110 tcctcaaggtgaaggagctgatgcgc 13407135 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 ctcgtcgcccacctcgccgcc 29 ||||||||||||||||||||| Sbjct: 4747514 ctcgtcgcccacctcgccgcc 4747534
>ref|NM_124599.3| Arabidopsis thaliana unknown protein AT5G52200 mRNA, complete cds Length = 786 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 201 attgaatcaaacaagccagtgaggcagaagataaccgagcccaagacaccgtatcaccct 260 |||||||| ||||| || || ||||||||||| || || || |||||||| || ||||| Sbjct: 86 attgaatcgaacaaacctgttaggcagaagattactgaaccaaagacaccataccacccg 145 Query: 261 atgatggatgaagatgg 277 ||||||||||| ||||| Sbjct: 146 atgatggatgatgatgg 162
>gb|AY116938.1| Arabidopsis thaliana AT5g52200/F17P19_10 mRNA, complete cds Length = 576 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 201 attgaatcaaacaagccagtgaggcagaagataaccgagcccaagacaccgtatcaccct 260 |||||||| ||||| || || ||||||||||| || || || |||||||| || ||||| Sbjct: 55 attgaatcgaacaaacctgttaggcagaagattactgaaccaaagacaccataccacccg 114 Query: 261 atgatggatgaagatgg 277 ||||||||||| ||||| Sbjct: 115 atgatggatgatgatgg 131
>gb|AY050347.1| Arabidopsis thaliana AT5g52200/F17P19_10 mRNA, complete cds Length = 780 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 201 attgaatcaaacaagccagtgaggcagaagataaccgagcccaagacaccgtatcaccct 260 |||||||| ||||| || || ||||||||||| || || || |||||||| || ||||| Sbjct: 85 attgaatcgaacaaacctgttaggcagaagattactgaaccaaagacaccataccacccg 144 Query: 261 atgatggatgaagatgg 277 ||||||||||| ||||| Sbjct: 145 atgatggatgatgatgg 161
>emb|BX833610.1|CNS0A0C3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL65ZG03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 733 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 201 attgaatcaaacaagccagtgaggcagaagataaccgagcccaagacaccgtatcaccct 260 |||||||| ||||| || || ||||||||||| || || || |||||||| || ||||| Sbjct: 86 attgaatcgaacaaacctgttaggcagaagattactgaaccaaagacaccataccacccg 145 Query: 261 atgatggatgaagatgg 277 ||||||||||| ||||| Sbjct: 146 atgatggatgatgatgg 162
>dbj|AB025603.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F17P19 Length = 48420 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 201 attgaatcaaacaagccagtgaggcagaagataaccgagcccaagacaccgtatcaccct 260 |||||||| ||||| || || ||||||||||| || || || |||||||| || ||||| Sbjct: 23917 attgaatcgaacaaacctgttaggcagaagattactgaaccaaagacaccataccacccg 23858 Query: 261 atgatggatgaagatgg 277 ||||||||||| ||||| Sbjct: 23857 atgatggatgatgatgg 23841
>ref|XM_470862.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1176 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Plus Query: 7 ccctcgtcgcccacctcgccgccg 30 |||||||||||||||||||||||| Sbjct: 173 ccctcgtcgcccacctcgccgccg 196
>gb|AC079853.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0004M10, complete sequence Length = 152423 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Plus Query: 7 ccctcgtcgcccacctcgccgccg 30 |||||||||||||||||||||||| Sbjct: 99524 ccctcgtcgcccacctcgccgccg 99547
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Plus Query: 7 ccctcgtcgcccacctcgccgccg 30 |||||||||||||||||||||||| Sbjct: 15837724 ccctcgtcgcccacctcgccgccg 15837747
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Plus Query: 7 ccctcgtcgcccacctcgccgccg 30 |||||||||||||||||||||||| Sbjct: 15832258 ccctcgtcgcccacctcgccgccg 15832281
>gb|AC168309.2| Mus musculus chromosome 1, clone wi1-2866I16, complete sequence Length = 40737 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 416 tgatgcagatgccatggaacag 437 |||||||||||||||||||||| Sbjct: 14294 tgatgcagatgccatggaacag 14315
>gb|AC102374.7| Mus musculus chromosome 1, clone RP23-278G2, complete sequence Length = 170448 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 416 tgatgcagatgccatggaacag 437 |||||||||||||||||||||| Sbjct: 14296 tgatgcagatgccatggaacag 14275
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 6 cccctcgtcgcccacctcgccg 27 |||||||||||||||||||||| Sbjct: 23444236 cccctcgtcgcccacctcgccg 23444215
>dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0451G12 Length = 142182 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 6 cccctcgtcgcccacctcgccg 27 |||||||||||||||||||||| Sbjct: 126073 cccctcgtcgcccacctcgccg 126052
>dbj|AP004154.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1111_E05 Length = 126978 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 6 cccctcgtcgcccacctcgccg 27 |||||||||||||||||||||| Sbjct: 35651 cccctcgtcgcccacctcgccg 35630
>dbj|AK066585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074F07, full insert sequence Length = 1467 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 6 cccctcgtcgcccacctcgccg 27 |||||||||||||||||||||| Sbjct: 713 cccctcgtcgcccacctcgccg 692
>ref|XM_476067.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 672 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 ctcgtcgcccacctcgccgcc 29 ||||||||||||||||||||| Sbjct: 23 ctcgtcgcccacctcgccgcc 3
>emb|AL611922.7| Human DNA sequence from clone RP11-633N4 on chromosome 9, complete sequence Length = 176612 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 422 agatgccatggaacaggatgg 442 ||||||||||||||||||||| Sbjct: 75524 agatgccatggaacaggatgg 75504
>emb|AL049744.8|HSJ177P10 Human DNA sequence from clone RP1-177P10 on chromosome 1q31.2-32.1 Contains the HF1 gene for H factor 1 (complement) protein, complete sequence Length = 150626 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 tgacaaatcatcagtgagttt 475 ||||||||||||||||||||| Sbjct: 139262 tgacaaatcatcagtgagttt 139282
>gb|BT023757.1| Drosophila melanogaster RE56180 full insert cDNA Length = 4661 Score = 42.1 bits (21), Expect = 1.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 ccgccagaaccgccgccgagnagc 65 |||||||||||||||||||| ||| Sbjct: 408 ccgccagaaccgccgccgaggagc 431
>emb|AL929357.1|PFA929357 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5 Length = 341050 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 374 taaaaatgattcaaaggatga 394 ||||||||||||||||||||| Sbjct: 327440 taaaaatgattcaaaggatga 327460
>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09, complete sequence Length = 145070 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 ctcgtcgcccacctcgccgcc 29 ||||||||||||||||||||| Sbjct: 115519 ctcgtcgcccacctcgccgcc 115539
>gb|AC023729.5| Drosophila melanogaster X BAC RP98-39L4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 182635 Score = 42.1 bits (21), Expect = 1.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 ccgccagaaccgccgccgagnagc 65 |||||||||||||||||||| ||| Sbjct: 73470 ccgccagaaccgccgccgaggagc 73493
>gb|AC023719.4| Drosophila melanogaster X BAC RP98-4L24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187230 Score = 42.1 bits (21), Expect = 1.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 ccgccagaaccgccgccgagnagc 65 |||||||||||||||||||| ||| Sbjct: 46566 ccgccagaaccgccgccgaggagc 46543
>ref|NM_206671.1| Drosophila melanogaster AP-1 CG9113-RE, transcript variant E (AP-1gamma), mRNA Length = 3424 Score = 42.1 bits (21), Expect = 1.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 ccgccagaaccgccgccgagnagc 65 |||||||||||||||||||| ||| Sbjct: 391 ccgccagaaccgccgccgaggagc 414
>ref|NM_176718.1| Drosophila melanogaster AP-1 CG9113-RD, transcript variant D (AP-1gamma), mRNA Length = 3441 Score = 42.1 bits (21), Expect = 1.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 ccgccagaaccgccgccgagnagc 65 |||||||||||||||||||| ||| Sbjct: 408 ccgccagaaccgccgccgaggagc 431
>ref|NM_176717.1| Drosophila melanogaster AP-1 CG9113-RC, transcript variant C (AP-1gamma), mRNA Length = 3486 Score = 42.1 bits (21), Expect = 1.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 ccgccagaaccgccgccgagnagc 65 |||||||||||||||||||| ||| Sbjct: 453 ccgccagaaccgccgccgaggagc 476
>ref|NM_167178.2| Drosophila melanogaster AP-1 CG9113-RB, transcript variant B (AP-1gamma), mRNA Length = 3423 Score = 42.1 bits (21), Expect = 1.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 ccgccagaaccgccgccgagnagc 65 |||||||||||||||||||| ||| Sbjct: 408 ccgccagaaccgccgccgaggagc 431
>ref|NM_132299.3| Drosophila melanogaster AP-1 CG9113-RA, transcript variant A (AP-1gamma), mRNA Length = 3468 Score = 42.1 bits (21), Expect = 1.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 ccgccagaaccgccgccgagnagc 65 |||||||||||||||||||| ||| Sbjct: 453 ccgccagaaccgccgccgaggagc 476
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 tcgtcgcccacctcgccgccgagct 34 |||||||||||||||||||| |||| Sbjct: 230870 tcgtcgcccacctcgccgccaagct 230894 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 tcgtcgcccacctcgccgcc 29 |||||||||||||||||||| Sbjct: 3978713 tcgtcgcccacctcgccgcc 3978694
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 27 gccgagcttgctcctccgcca 47 ||||||||||||||||||||| Sbjct: 723906 gccgagcttgctcctccgcca 723926
>gb|AE003446.4| Drosophila melanogaster chromosome X, section 30 of 74 of the complete sequence Length = 290970 Score = 42.1 bits (21), Expect = 1.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 ccgccagaaccgccgccgagnagc 65 |||||||||||||||||||| ||| Sbjct: 62411 ccgccagaaccgccgccgaggagc 62434
>emb|AL844592.6| Mouse DNA sequence from clone RP23-244J24 on chromosome 2, complete sequence Length = 197462 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 409 cagatgatgatgcagatgccatgga 433 |||||||||||||||| |||||||| Sbjct: 172385 cagatgatgatgcagaggccatgga 172409
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11, complete sequence Length = 187956 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 ctcgtcgcccacctcgccgcc 29 ||||||||||||||||||||| Sbjct: 19922 ctcgtcgcccacctcgccgcc 19942
>ref|XM_550098.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1335 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 cgtcgcccacctcgccgccg 30 |||||||||||||||||||| Sbjct: 173 cgtcgcccacctcgccgccg 192
>gb|AC145580.3| Mus musculus BAC clone RP24-380D12 from chromosome 16, complete sequence Length = 130390 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 tattcactgctttaaatggt 359 |||||||||||||||||||| Sbjct: 14892 tattcactgctttaaatggt 14911
>gb|AC146238.2| Pan troglodytes BAC clone CH251-170A15 from Y, complete sequence Length = 169552 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 gaataggtggtgttatctgg 101 |||||||||||||||||||| Sbjct: 12524 gaataggtggtgttatctgg 12543
>gb|DQ491001.1| Chlorella virus MT325 ctg_71 genomic sequence Length = 314335 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 tcctcagatgatgatgcaga 424 |||||||||||||||||||| Sbjct: 186840 tcctcagatgatgatgcaga 186821
>gb|AC118603.9| Mus musculus chromosome 16, clone RP24-79L6, complete sequence Length = 190432 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 tattcactgctttaaatggt 359 |||||||||||||||||||| Sbjct: 101101 tattcactgctttaaatggt 101082
>gb|AC132620.3| Mus musculus BAC clone RP23-179A12 from chromosome 6, complete sequence Length = 178174 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 aaatcatcagtgagtttcaa 478 |||||||||||||||||||| Sbjct: 87521 aaatcatcagtgagtttcaa 87502
>gb|BC042340.1| Xenopus laevis LIM domain binding 3, mRNA (cDNA clone MGC:52706 IMAGE:4683528), complete cds Length = 2503 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 atgaaattgaatcaaacaag 215 |||||||||||||||||||| Sbjct: 1466 atgaaattgaatcaaacaag 1485
>gb|AC115721.11| Mus musculus chromosome 3, clone RP23-9P8, complete sequence Length = 218746 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 atgatgcagatgccatggaa 434 |||||||||||||||||||| Sbjct: 18687 atgatgcagatgccatggaa 18706
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 cgcccacctcgccgccgagc 33 |||||||||||||||||||| Sbjct: 386196 cgcccacctcgccgccgagc 386215
>emb|AL929351.1|PFA929351 Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4 Length = 347050 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 aaaaatgattcaaaggatga 394 |||||||||||||||||||| Sbjct: 93938 aaaaatgattcaaaggatga 93957
>emb|AL606706.3|OSJN00063 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0086G13, complete sequence Length = 127952 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 ccctcgtcgcccacctcgccgccg 30 ||||||||||||| |||||||||| Sbjct: 78330 ccctcgtcgcccatctcgccgccg 78307
>dbj|BS000585.1| Pan troglodytes chromosome Y clone:PTB-582H02, complete sequence Length = 140513 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 gaataggtggtgttatctgg 101 |||||||||||||||||||| Sbjct: 50603 gaataggtggtgttatctgg 50622
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 gaataggtggtgttatctgg 101 |||||||||||||||||||| Sbjct: 20161378 gaataggtggtgttatctgg 20161359
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tcgtcgcccacctcgccgcc 29 |||||||||||||||||||| Sbjct: 2749434 tcgtcgcccacctcgccgcc 2749453
>dbj|AB088119.1| Streptomyces sp. TP-A0274 staurosporine biosynthetic gene cluster (staR, staB, staA, staN, staG, staO, staD, staP, staMA, staJ, staK, staI, staE, staMB), complete cds Length = 22999 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tcgtcgcccacctcgccgcc 29 |||||||||||||||||||| Sbjct: 1596 tcgtcgcccacctcgccgcc 1615
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 3 cgccccctcgtcgcccacctcgccgccg 30 ||||||||| ||| |||||||||||||| Sbjct: 2325667 cgccccctcctcgaccacctcgccgccg 2325694
>gb|AC159204.2| Mus musculus BAC clone RP23-229H13 from chromosome 12, complete sequence Length = 211156 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 gcctcttcaagtaaaaatga 382 |||||||||||||||||||| Sbjct: 150213 gcctcttcaagtaaaaatga 150194
>gb|AC159187.2| Mus musculus BAC clone RP24-226L7 from chromosome 17, complete sequence Length = 188360 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 gatgatgcagatgccatgga 433 |||||||||||||||||||| Sbjct: 68865 gatgatgcagatgccatgga 68884
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 ccctcgtcgcccacctcgccgccg 30 ||||||||||||| |||||||||| Sbjct: 21643788 ccctcgtcgcccatctcgccgccg 21643765
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 cgtcgcccacctcgccgccg 30 |||||||||||||||||||| Sbjct: 4795961 cgtcgcccacctcgccgccg 4795980 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 cgtcgcccacctcgccgccg 30 |||||||||||||||||||| Sbjct: 4774975 cgtcgcccacctcgccgccg 4774994
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 cgtcgcccacctcgccgccg 30 |||||||||||||||||||| Sbjct: 2352315 cgtcgcccacctcgccgccg 2352296
>gb|AC010972.3|AC010972 Homo sapiens clone RP11-133D3, complete sequence Length = 114637 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 gaataggtggtgttatctgg 101 |||||||||||||||||||| Sbjct: 56317 gaataggtggtgttatctgg 56336
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 tcagatgatgatgcagatgc 427 |||||||||||||||||||| Sbjct: 1186567 tcagatgatgatgcagatgc 1186586
>gb|AC147710.3| Pan troglodytes BAC clone CH251-473C15 from chromosome y, complete sequence Length = 200403 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 gaataggtggtgttatctgg 101 |||||||||||||||||||| Sbjct: 146922 gaataggtggtgttatctgg 146941
>gb|AC008462.6|AC008462 Homo sapiens chromosome 5 clone CTC-352J10, complete sequence Length = 183591 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 gctgaagctatattcactgc 349 |||||||||||||||||||| Sbjct: 35948 gctgaagctatattcactgc 35929
>gb|AC084571.1|CBRG39J22 Caenorhabditis briggsae cosmid G39J22, complete sequence Length = 41637 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 acaaatcatcagtgagtttc 476 |||||||||||||||||||| Sbjct: 10021 acaaatcatcagtgagtttc 10040
>dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0024G09 Length = 175565 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 cgtcgcccacctcgccgccg 30 |||||||||||||||||||| Sbjct: 81365 cgtcgcccacctcgccgccg 81346
>dbj|AP002483.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0019D06 Length = 167405 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 cgtcgcccacctcgccgccg 30 |||||||||||||||||||| Sbjct: 135899 cgtcgcccacctcgccgccg 135880
>dbj|AK107219.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-D01, full insert sequence Length = 1335 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 cgtcgcccacctcgccgccg 30 |||||||||||||||||||| Sbjct: 173 cgtcgcccacctcgccgccg 192
>dbj|AK105324.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-H04, full insert sequence Length = 430 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 ccctcgtcgcccacctcgccgccg 30 ||||||||||||| |||||||||| Sbjct: 61 ccctcgtcgcccatctcgccgccg 38
>dbj|AK072025.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104N14, full insert sequence Length = 1351 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 cgtcgcccacctcgccgccg 30 |||||||||||||||||||| Sbjct: 189 cgtcgcccacctcgccgccg 208
>gb|AC114424.10| Mus musculus chromosome 3, clone RP24-84L9, complete sequence Length = 220500 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 atgatgcagatgccatggaa 434 |||||||||||||||||||| Sbjct: 48645 atgatgcagatgccatggaa 48626
>gb|AC167667.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940123D9, complete sequence Length = 121336 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 2 tcgccccctcgtcgcccacctcgccgcc 29 ||||| ||||||||||| |||||||||| Sbjct: 84126 tcgcctcctcgtcgccctcctcgccgcc 84153
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 cgtcgcccacctcgccgccg 30 |||||||||||||||||||| Sbjct: 4795942 cgtcgcccacctcgccgccg 4795961 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 cgtcgcccacctcgccgccg 30 |||||||||||||||||||| Sbjct: 4774956 cgtcgcccacctcgccgccg 4774975
>emb|AL713946.3|CNS07YPP Oryza sativa chromosome 12, . BAC OJ1005_B07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161762 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 cgtcgcccacctcgccgccg 30 |||||||||||||||||||| Sbjct: 72156 cgtcgcccacctcgccgccg 72137 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 cgtcgcccacctcgccgccg 30 |||||||||||||||||||| Sbjct: 51170 cgtcgcccacctcgccgccg 51151
>gb|AC004074.1|AC004074 Homo Sapiens Chromosome X clone bWXD759, complete sequence Length = 153578 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ttgctgcctaaacatttctt 128 |||||||||||||||||||| Sbjct: 3505 ttgctgcctaaacatttctt 3524
>emb|CT009682.6| Mouse DNA sequence from clone RP23-136H15 on chromosome 16, complete sequence Length = 227456 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 tattcactgctttaaatggt 359 |||||||||||||||||||| Sbjct: 25085 tattcactgctttaaatggt 25066 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,733,934 Number of Sequences: 3902068 Number of extensions: 4733934 Number of successful extensions: 98224 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97534 Number of HSP's gapped (non-prelim): 688 length of query: 535 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 512 effective length of database: 17,143,297,704 effective search space: 8777368424448 effective search space used: 8777368424448 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
