Clone Name | baaln02 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_184935.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1223 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 521 gattgggtgcgccaccgtaggataatcaaccctgttttcaccattgataagctaaagatg 580 ||||||| |||||| || || |||||||||||| ||||||||| |||||| |||||||| Sbjct: 386 gattgggagcgccatcgcagagtaatcaaccctgctttcaccatggataagataaagatg 445 Query: 581 atgacgaaaacaatg 595 ||||| ||||||||| Sbjct: 446 atgacaaaaacaatg 460 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 197 caagggatccatggaccctcctacaggttcttgaaaggctgcaacgaggacgtga 251 ||||| |||| |||||| |||||| |||||||||||||||||| ||||| |||| Sbjct: 63 caaggaatccgtggaccaccctacaagttcttgaaaggctgcaatgaggatgtga 117
>dbj|AK069394.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014D12, full insert sequence Length = 1752 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 521 gattgggtgcgccaccgtaggataatcaaccctgttttcaccattgataagctaaagatg 580 ||||||| |||||| || || |||||||||||| ||||||||| |||||| |||||||| Sbjct: 473 gattgggagcgccatcgcagagtaatcaaccctgctttcaccatggataagataaagatg 532 Query: 581 atgacgaaaacaatg 595 ||||| ||||||||| Sbjct: 533 atgacaaaaacaatg 547 Score = 48.1 bits (24), Expect = 0.034 Identities = 33/36 (91%) Strand = Plus / Plus Query: 216 cctacaggttcttgaaaggctgcaacgaggacgtga 251 |||||| |||||||||||||||||| ||||| |||| Sbjct: 168 cctacaagttcttgaaaggctgcaatgaggatgtga 203
>ref|XM_470668.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1294 Score = 73.8 bits (37), Expect = 6e-10 Identities = 226/289 (78%) Strand = Plus / Plus Query: 296 gaccacaagtacctcccgcggatcgcgccccactacctcaaatggagggctcagcacgga 355 |||||||| |||||||| |||| || || |||| ||||||||||||||||||| | ||| Sbjct: 44 gaccacaactacctcccaaggatagcacctcacttcctcaaatggagggctcagtatgga 103 Query: 356 gaaccatttctatactggcatgggccacagccacgaatctgcatatttgagtacgaaatg 415 ||| | ||||| | ||| |||| || ||||||| |||||||| || || || || || Sbjct: 104 gaagcgtttctgttttggtatggagcaaagccacgcatctgcattttcgactatgagttg 163 Query: 416 gcaaggcaaatcctttcaaccaagtccggacatttcgtgaagaacgatgcacacccaacc 475 || ||||| || || || | |||||| |||||||| ||||||| ||||| | |||||| Sbjct: 164 gctaggcagattctctcgagcaagtctggacattttctgaagaatgatgcgcccccaact 223 Query: 476 ctcttggctttggttggcaagggactcgggtttatggaaggcgcggattgggtgcgccac 535 || |||| | | ||||||||| | | | |||||||| | |||||||||||||| Sbjct: 224 ctggtggccctaatgggcaagggattagtactcttggaaggcactgattgggtgcgccat 283 Query: 536 cgtaggataatcaaccctgttttcaccattgataagctaaagatgatga 584 || ||| |||||||||||| ||| | ||| || ||||| |||||||||| Sbjct: 284 cgcagggtaatcaaccctgcttttaacatggacaagctcaagatgatga 332
>ref|NM_184933.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1850 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 510 tggaaggcgcggattgggtgcgccaccgtaggataatcaaccctgttttcaccattgata 569 |||||||||| ||||||||||| || |||||| | ||| ||| | ||||||||| || | Sbjct: 428 tggaaggcgcagattgggtgcggcatcgtagggtgctcaccccagctttcaccatggaca 487 Query: 570 agctaaagatgatgacgaaaacaatg 595 |||||||| ||||||| ||||||||| Sbjct: 488 agctaaaggtgatgacaaaaacaatg 513 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 446 catttcgtgaagaacgatgcacaccca 472 ||||||||||||||||| ||||||||| Sbjct: 364 catttcgtgaagaacgacgcacaccca 390
>dbj|AK120700.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170M24, full insert sequence Length = 2167 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 510 tggaaggcgcggattgggtgcgccaccgtaggataatcaaccctgttttcaccattgata 569 |||||||||| ||||||||||| || |||||| | ||| ||| | ||||||||| || | Sbjct: 463 tggaaggcgcagattgggtgcggcatcgtagggtgctcaccccagctttcaccatggaca 522 Query: 570 agctaaagatgatgacgaaaacaatg 595 |||||||| ||||||| ||||||||| Sbjct: 523 agctaaaggtgatgacaaaaacaatg 548 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 446 catttcgtgaagaacgatgcacaccca 472 ||||||||||||||||| ||||||||| Sbjct: 399 catttcgtgaagaacgacgcacaccca 425
>dbj|AK101513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E16, full insert sequence Length = 1849 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 510 tggaaggcgcggattgggtgcgccaccgtaggataatcaaccctgttttcaccattgata 569 |||||||||| ||||||||||| || |||||| | ||| ||| | ||||||||| || | Sbjct: 516 tggaaggcgcagattgggtgcggcatcgtagggtgctcaccccagctttcaccatggaca 575 Query: 570 agctaaagatgatgacgaaaacaatg 595 |||||||| ||||||| ||||||||| Sbjct: 576 agctaaaggtgatgacaaaaacaatg 601 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 446 catttcgtgaagaacgatgcacaccca 472 ||||||||||||||||| ||||||||| Sbjct: 452 catttcgtgaagaacgacgcacaccca 478
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 197 caagggatccatggaccctcctacaggttcttgaaaggctgcaacgaggacgtga 251 ||||| |||| |||||| |||||| |||||||||||||||||| ||||| |||| Sbjct: 14397654 caaggaatccgtggaccaccctacaagttcttgaaaggctgcaatgaggatgtga 14397708 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 296 gaccacaagtacctcccgcggatcgcgccccactacctcaaatggagggctcag 349 |||||||| |||||||| |||| || || |||| ||||||||||||||||||| Sbjct: 14405904 gaccacaactacctcccaaggatagcacctcacttcctcaaatggagggctcag 14405957 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Plus Query: 510 tggaaggcgcggattgggtgcgccaccgtaggataatcaaccctg 554 |||||||| | |||||||||||||| || ||| |||||||||||| Sbjct: 14409137 tggaaggcactgattgggtgcgccatcgcagggtaatcaaccctg 14409181 Score = 50.1 bits (25), Expect = 0.009 Identities = 49/57 (85%) Strand = Plus / Plus Query: 521 gattgggtgcgccaccgtaggataatcaaccctgttttcaccattgataagctaaag 577 ||||||| |||||| || || |||||||||||| ||||||||| |||||| ||||| Sbjct: 14398165 gattgggagcgccatcgcagagtaatcaaccctgctttcaccatggataagataaag 14398221 Score = 48.1 bits (24), Expect = 0.034 Identities = 57/68 (83%) Strand = Plus / Plus Query: 510 tggaaggcgcggattgggtgcgccaccgtaggataatcaaccctgttttcaccattgata 569 |||||||||| ||||||||||| || |||||| | ||| ||| | ||||||||| || | Sbjct: 14392877 tggaaggcgcagattgggtgcggcatcgtagggtgctcaccccagctttcaccatggaca 14392936 Query: 570 agctaaag 577 |||||||| Sbjct: 14392937 agctaaag 14392944 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 446 catttcgtgaagaacgatgcacaccca 472 ||||||||||||||||| ||||||||| Sbjct: 14392813 catttcgtgaagaacgacgcacaccca 14392839 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 gaggagcatcaaggaggaga 269 |||||||||||||||||||| Sbjct: 22918978 gaggagcatcaaggaggaga 22918959
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 197 caagggatccatggaccctcctacaggttcttgaaaggctgcaacgaggacgtga 251 ||||| |||| |||||| |||||| |||||||||||||||||| ||||| |||| Sbjct: 146883 caaggaatccgtggaccaccctacaagttcttgaaaggctgcaatgaggatgtga 146937 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 296 gaccacaagtacctcccgcggatcgcgccccactacctcaaatggagggctcag 349 |||||||| |||||||| |||| || || |||| ||||||||||||||||||| Sbjct: 155133 gaccacaactacctcccaaggatagcacctcacttcctcaaatggagggctcag 155186 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Plus Query: 510 tggaaggcgcggattgggtgcgccaccgtaggataatcaaccctg 554 |||||||| | |||||||||||||| || ||| |||||||||||| Sbjct: 158366 tggaaggcactgattgggtgcgccatcgcagggtaatcaaccctg 158410 Score = 50.1 bits (25), Expect = 0.009 Identities = 49/57 (85%) Strand = Plus / Plus Query: 521 gattgggtgcgccaccgtaggataatcaaccctgttttcaccattgataagctaaag 577 ||||||| |||||| || || |||||||||||| ||||||||| |||||| ||||| Sbjct: 147394 gattgggagcgccatcgcagagtaatcaaccctgctttcaccatggataagataaag 147450 Score = 48.1 bits (24), Expect = 0.034 Identities = 57/68 (83%) Strand = Plus / Plus Query: 510 tggaaggcgcggattgggtgcgccaccgtaggataatcaaccctgttttcaccattgata 569 |||||||||| ||||||||||| || |||||| | ||| ||| | ||||||||| || | Sbjct: 142106 tggaaggcgcagattgggtgcggcatcgtagggtgctcaccccagctttcaccatggaca 142165 Query: 570 agctaaag 577 |||||||| Sbjct: 142166 agctaaag 142173 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 446 catttcgtgaagaacgatgcacaccca 472 ||||||||||||||||| ||||||||| Sbjct: 142042 catttcgtgaagaacgacgcacaccca 142068
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 197 caagggatccatggaccctcctacaggttcttgaaaggctgcaacgaggacgtga 251 ||||| |||| |||||| |||||| |||||||||||||||||| ||||| |||| Sbjct: 14392629 caaggaatccgtggaccaccctacaagttcttgaaaggctgcaatgaggatgtga 14392683 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 296 gaccacaagtacctcccgcggatcgcgccccactacctcaaatggagggctcag 349 |||||||| |||||||| |||| || || |||| ||||||||||||||||||| Sbjct: 14400879 gaccacaactacctcccaaggatagcacctcacttcctcaaatggagggctcag 14400932 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Plus Query: 510 tggaaggcgcggattgggtgcgccaccgtaggataatcaaccctg 554 |||||||| | |||||||||||||| || ||| |||||||||||| Sbjct: 14404112 tggaaggcactgattgggtgcgccatcgcagggtaatcaaccctg 14404156 Score = 50.1 bits (25), Expect = 0.009 Identities = 49/57 (85%) Strand = Plus / Plus Query: 521 gattgggtgcgccaccgtaggataatcaaccctgttttcaccattgataagctaaag 577 ||||||| |||||| || || |||||||||||| ||||||||| |||||| ||||| Sbjct: 14393140 gattgggagcgccatcgcagagtaatcaaccctgctttcaccatggataagataaag 14393196 Score = 48.1 bits (24), Expect = 0.034 Identities = 57/68 (83%) Strand = Plus / Plus Query: 510 tggaaggcgcggattgggtgcgccaccgtaggataatcaaccctgttttcaccattgata 569 |||||||||| ||||||||||| || |||||| | ||| ||| | ||||||||| || | Sbjct: 14387852 tggaaggcgcagattgggtgcggcatcgtagggtgctcaccccagctttcaccatggaca 14387911 Query: 570 agctaaag 577 |||||||| Sbjct: 14387912 agctaaag 14387919 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 446 catttcgtgaagaacgatgcacaccca 472 ||||||||||||||||| ||||||||| Sbjct: 14387788 catttcgtgaagaacgacgcacaccca 14387814 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 gaggagcatcaaggaggaga 269 |||||||||||||||||||| Sbjct: 22912006 gaggagcatcaaggaggaga 22911987
>gb|AC087220.9| Oryza sativa chromosome 3 BAC OSJNBb0097F01 genomic sequence, complete sequence Length = 135594 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 296 gaccacaagtacctcccgcggatcgcgccccactacctcaaatggagggctcag 349 |||||||| |||||||| |||| || || |||| ||||||||||||||||||| Sbjct: 135477 gaccacaactacctcccaaggatagcacctcacttcctcaaatggagggctcag 135424 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Minus Query: 510 tggaaggcgcggattgggtgcgccaccgtaggataatcaaccctg 554 |||||||| | |||||||||||||| || ||| |||||||||||| Sbjct: 132244 tggaaggcactgattgggtgcgccatcgcagggtaatcaaccctg 132200
>emb|AL592487.10| Human DNA sequence from clone RP11-290B1 on chromosome 1, complete sequence Length = 17462 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 cccatggccttccttgctgtg 85 ||||||||||||||||||||| Sbjct: 14219 cccatggccttccttgctgtg 14199
>ref|NM_117712.2| Arabidopsis thaliana protein translocase/ protein transporter AT4G16160 transcript variant AT4G16160.1 mRNA, complete cds Length = 744 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gccatgagcaagtggttcag 192 |||||||||||||||||||| Sbjct: 470 gccatgagcaagtggttcag 489
>ref|NM_179063.1| Arabidopsis thaliana protein translocase/ protein transporter AT4G16160 transcript variant AT4G16160.2 mRNA, complete cds Length = 762 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gccatgagcaagtggttcag 192 |||||||||||||||||||| Sbjct: 488 gccatgagcaagtggttcag 507
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 583 gacgaaaacaatgttggatt 602 |||||||||||||||||||| Sbjct: 58954 gacgaaaacaatgttggatt 58935
>gb|BT011945.1| Arabidopsis thaliana At4g16160 mRNA sequence Length = 534 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gccatgagcaagtggttcag 192 |||||||||||||||||||| Sbjct: 455 gccatgagcaagtggttcag 474
>gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete sequence Length = 184783 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 gaggagcatcaaggaggaga 269 |||||||||||||||||||| Sbjct: 121508 gaggagcatcaaggaggaga 121489
>emb|AL590710.14| Human DNA sequence from clone RP11-153P4 on chromosome 9 Contains the 3' end of the VAV2 gene for vav 2 oncogene, the 5' end of the SARDH gene for sarcosine dehydrogenase (SAR, SDH, SARD, DMGDHL1) and a CpG island, complete sequence Length = 118671 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 cagctctcactcacaccgcc 46 |||||||||||||||||||| Sbjct: 104150 cagctctcactcacaccgcc 104169
>ref|XM_795710.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC594294 (LOC594294), mRNA Length = 390 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 577 gatgatgacgaaaacaatgttgga 600 ||||||||||||||| |||||||| Sbjct: 301 gatgatgacgaaaacgatgttgga 324
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 cctcgttctggttgctctgctcgc 114 ||||||||||||||| |||||||| Sbjct: 2058685 cctcgttctggttgcgctgctcgc 2058662
>emb|Z97340.2|ATFCA5 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 5 Length = 209164 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gccatgagcaagtggttcag 192 |||||||||||||||||||| Sbjct: 125317 gccatgagcaagtggttcag 125336
>emb|Z67750.1|SC41KCIV S.cerevisiae DNA (cosmid 31A2; chromosome IV; 41 kb) Length = 41175 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 571 gctaaagatgatgacgaaaa 590 |||||||||||||||||||| Sbjct: 12366 gctaaagatgatgacgaaaa 12347
>ref|XM_794924.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC578842 (LOC578842), mRNA Length = 534 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 577 gatgatgacgaaaacaatgttgga 600 ||||||||||||||| |||||||| Sbjct: 439 gatgatgacgaaaacgatgttgga 462
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome Length = 3345687 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 583 gacgaaaacaatgttggatt 602 |||||||||||||||||||| Sbjct: 55699 gacgaaaacaatgttggatt 55680
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 583 gacgaaaacaatgttggatt 602 |||||||||||||||||||| Sbjct: 57640 gacgaaaacaatgttggatt 57621
>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome Length = 1931047 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 cacaccacacagctctcact 37 |||||||||||||||||||| Sbjct: 1604570 cacaccacacagctctcact 1604589
>emb|AL161543.2|ATCHRIV43 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 43 Length = 198226 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gccatgagcaagtggttcag 192 |||||||||||||||||||| Sbjct: 94307 gccatgagcaagtggttcag 94326
>emb|BX901922.9| Zebrafish DNA sequence from clone DKEY-33C12 in linkage group 13, complete sequence Length = 242350 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 18 cacaccacacagctctcactcaca 41 ||||||||||||| |||||||||| Sbjct: 10660 cacaccacacagcgctcactcaca 10637
>emb|BX511084.9| Zebrafish DNA sequence from clone DKEY-265C15 in linkage group 13, complete sequence Length = 156524 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 18 cacaccacacagctctcactcaca 41 ||||||||||||| |||||||||| Sbjct: 22641 cacaccacacagcgctcactcaca 22664
>gb|AC097014.2| Homo sapiens chromosome 3 clone RP11-29M1, complete sequence Length = 143671 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 gccacaccacacagctctca 35 |||||||||||||||||||| Sbjct: 74378 gccacaccacacagctctca 74359
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 gaggagcatcaaggaggaga 269 |||||||||||||||||||| Sbjct: 26098702 gaggagcatcaaggaggaga 26098683
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 gaggagcatcaaggaggaga 269 |||||||||||||||||||| Sbjct: 16067165 gaggagcatcaaggaggaga 16067146
>emb|BX828909.1|CNS0A2JG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL50ZA12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 734 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gccatgagcaagtggttcag 192 |||||||||||||||||||| Sbjct: 469 gccatgagcaagtggttcag 488
>gb|AY088334.1| Arabidopsis thaliana clone 5714 mRNA, complete sequence Length = 741 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gccatgagcaagtggttcag 192 |||||||||||||||||||| Sbjct: 471 gccatgagcaagtggttcag 490
>gb|AC025572.13|AC025572 Homo sapiens 3 BAC RP11-58O15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 191510 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 gccacaccacacagctctca 35 |||||||||||||||||||| Sbjct: 119854 gccacaccacacagctctca 119835
>dbj|AP005256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0038F09 Length = 166568 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 gaggagcatcaaggaggaga 269 |||||||||||||||||||| Sbjct: 37498 gaggagcatcaaggaggaga 37479
>dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0040K22 Length = 155832 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 gaggagcatcaaggaggaga 269 |||||||||||||||||||| Sbjct: 148567 gaggagcatcaaggaggaga 148548
>emb|BX001022.9| Zebrafish DNA sequence from clone CH211-243O19, complete sequence Length = 160804 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 18 cacaccacacagctctcactcaca 41 ||||||||||||| |||||||||| Sbjct: 87187 cacaccacacagcgctcactcaca 87164
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 gccgtacgccatgagcaagt 185 |||||||||||||||||||| Sbjct: 1628694 gccgtacgccatgagcaagt 1628675
>emb|Z74222.1|SCYDL174C S.cerevisiae chromosome IV reading frame ORF YDL174c Length = 2672 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 571 gctaaagatgatgacgaaaa 590 |||||||||||||||||||| Sbjct: 805 gctaaagatgatgacgaaaa 786
>emb|X66052.1|SCDLDG S.cerevisiae DLD gene for D-lactate ferricytochrome c oxidoreductase Length = 2359 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 571 gctaaagatgatgacgaaaa 590 |||||||||||||||||||| Sbjct: 1402 gctaaagatgatgacgaaaa 1421
>gb|AC105065.13| Mus musculus chromosome 18, clone RP24-459E1, complete sequence Length = 154308 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 ccacacagctctcactcaca 41 |||||||||||||||||||| Sbjct: 46182 ccacacagctctcactcaca 46163
>gb|DQ332540.1| Synthetic construct Saccharomyces cerevisiae clone FLH201473.01X DLD1 gene, complete sequence Length = 1764 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 571 gctaaagatgatgacgaaaa 590 |||||||||||||||||||| Sbjct: 1267 gctaaagatgatgacgaaaa 1286
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 253 gagcatcaaggaggagaccgaccg 276 ||||||||||||||||| |||||| Sbjct: 2116778 gagcatcaaggaggagatcgaccg 2116801
>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11, complete sequence Length = 163039 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 gaggagcatcaaggaggaga 269 |||||||||||||||||||| Sbjct: 133029 gaggagcatcaaggaggaga 133010
>gb|AC125210.4| Mus musculus BAC clone RP23-148P22 from 18, complete sequence Length = 210193 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ccacacagctctcactcaca 41 |||||||||||||||||||| Sbjct: 20265 ccacacagctctcactcaca 20284
>emb|CR352308.33| Zebrafish DNA sequence from clone CH211-195H3 in linkage group 8, complete sequence Length = 202242 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 547 caaccctgttttcaccattgataa 570 |||||||||||||| ||||||||| Sbjct: 134424 caaccctgttttcaacattgataa 134447
>gb|AC002297.1|AC002297 Genomic sequence from Human 9q34, complete sequence Length = 37249 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 cagctctcactcacaccgcc 46 |||||||||||||||||||| Sbjct: 10305 cagctctcactcacaccgcc 10286 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,201,169 Number of Sequences: 3902068 Number of extensions: 4201169 Number of successful extensions: 73507 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73114 Number of HSP's gapped (non-prelim): 393 length of query: 607 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 584 effective length of database: 17,143,297,704 effective search space: 10011685859136 effective search space used: 10011685859136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)