ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baaln02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_184935.1| Oryza sativa (japonica cultivar-group), mRNA 78 4e-11
2dbj|AK069394.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 4e-11
3ref|XM_470668.1| Oryza sativa (japonica cultivar-group), mRNA 74 6e-10
4ref|NM_184933.1| Oryza sativa (japonica cultivar-group), mRNA 68 4e-08
5dbj|AK120700.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 4e-08
6dbj|AK101513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 4e-08
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 5e-04
8gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 geno... 54 5e-04
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
10gb|AC087220.9| Oryza sativa chromosome 3 BAC OSJNBb0097F01 genom... 52 0.002
11emb|AL592487.10| Human DNA sequence from clone RP11-290B1 on chr... 42 2.1
12ref|NM_117712.2| Arabidopsis thaliana protein translocase/ prote... 40 8.3
13ref|NM_179063.1| Arabidopsis thaliana protein translocase/ prote... 40 8.3
14gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 40 8.3
15gb|BT011945.1| Arabidopsis thaliana At4g16160 mRNA sequence 40 8.3
16gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genom... 40 8.3
17emb|AL590710.14| Human DNA sequence from clone RP11-153P4 on chr... 40 8.3
18ref|XM_795710.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 40 8.3
19gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 8.3
20emb|Z97340.2|ATFCA5 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 8.3
21emb|Z67750.1|SC41KCIV S.cerevisiae DNA (cosmid 31A2; chromosome ... 40 8.3
22ref|XM_794924.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 40 8.3
23emb|CR628337.1| Legionella pneumophila str. Lens complete genome 40 8.3
24emb|CR628336.1| Legionella pneumophila str. Paris complete genome 40 8.3
25emb|BX897699.1| Bartonella henselae strain Houston-1, complete g... 40 8.3
26emb|AL161543.2|ATCHRIV43 Arabidopsis thaliana DNA chromosome 4, ... 40 8.3
27emb|BX901922.9| Zebrafish DNA sequence from clone DKEY-33C12 in ... 40 8.3
28emb|BX511084.9| Zebrafish DNA sequence from clone DKEY-265C15 in... 40 8.3
29gb|AC097014.2| Homo sapiens chromosome 3 clone RP11-29M1, comple... 40 8.3
30dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
31dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
32emb|BX828909.1|CNS0A2JG Arabidopsis thaliana Full-length cDNA Co... 40 8.3
33gb|AY088334.1| Arabidopsis thaliana clone 5714 mRNA, complete se... 40 8.3
34gb|AC025572.13|AC025572 Homo sapiens 3 BAC RP11-58O15 (Roswell P... 40 8.3
35dbj|AP005256.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
36dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
37emb|BX001022.9| Zebrafish DNA sequence from clone CH211-243O19, ... 40 8.3
38emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 8.3
39emb|Z74222.1|SCYDL174C S.cerevisiae chromosome IV reading frame ... 40 8.3
40emb|X66052.1|SCDLDG S.cerevisiae DLD gene for D-lactate ferricyt... 40 8.3
41gb|AC105065.13| Mus musculus chromosome 18, clone RP24-459E1, co... 40 8.3
42gb|DQ332540.1| Synthetic construct Saccharomyces cerevisiae clon... 40 8.3
43gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 8.3
44emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4,... 40 8.3
45gb|AC125210.4| Mus musculus BAC clone RP23-148P22 from 18, compl... 40 8.3
46emb|CR352308.33| Zebrafish DNA sequence from clone CH211-195H3 i... 40 8.3
47gb|AC002297.1|AC002297 Genomic sequence from Human 9q34, complet... 40 8.3

>ref|NM_184935.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1223

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                       
Query: 521 gattgggtgcgccaccgtaggataatcaaccctgttttcaccattgataagctaaagatg 580
           ||||||| |||||| || ||  |||||||||||| ||||||||| |||||| ||||||||
Sbjct: 386 gattgggagcgccatcgcagagtaatcaaccctgctttcaccatggataagataaagatg 445

                          
Query: 581 atgacgaaaacaatg 595
           ||||| |||||||||
Sbjct: 446 atgacaaaaacaatg 460



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                  
Query: 197 caagggatccatggaccctcctacaggttcttgaaaggctgcaacgaggacgtga 251
           ||||| |||| ||||||  |||||| |||||||||||||||||| ||||| ||||
Sbjct: 63  caaggaatccgtggaccaccctacaagttcttgaaaggctgcaatgaggatgtga 117



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>dbj|AK069394.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014D12, full
           insert sequence
          Length = 1752

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                       
Query: 521 gattgggtgcgccaccgtaggataatcaaccctgttttcaccattgataagctaaagatg 580
           ||||||| |||||| || ||  |||||||||||| ||||||||| |||||| ||||||||
Sbjct: 473 gattgggagcgccatcgcagagtaatcaaccctgctttcaccatggataagataaagatg 532

                          
Query: 581 atgacgaaaacaatg 595
           ||||| |||||||||
Sbjct: 533 atgacaaaaacaatg 547



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 216 cctacaggttcttgaaaggctgcaacgaggacgtga 251
           |||||| |||||||||||||||||| ||||| ||||
Sbjct: 168 cctacaagttcttgaaaggctgcaatgaggatgtga 203



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>ref|XM_470668.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1294

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 226/289 (78%)
 Strand = Plus / Plus

                                                                       
Query: 296 gaccacaagtacctcccgcggatcgcgccccactacctcaaatggagggctcagcacgga 355
           |||||||| ||||||||  |||| || || |||| ||||||||||||||||||| | |||
Sbjct: 44  gaccacaactacctcccaaggatagcacctcacttcctcaaatggagggctcagtatgga 103

                                                                       
Query: 356 gaaccatttctatactggcatgggccacagccacgaatctgcatatttgagtacgaaatg 415
           ||| | ||||| |  ||| ||||  || ||||||| |||||||| || || || ||  ||
Sbjct: 104 gaagcgtttctgttttggtatggagcaaagccacgcatctgcattttcgactatgagttg 163

                                                                       
Query: 416 gcaaggcaaatcctttcaaccaagtccggacatttcgtgaagaacgatgcacacccaacc 475
           || ||||| || || || | |||||| ||||||||  ||||||| ||||| | |||||| 
Sbjct: 164 gctaggcagattctctcgagcaagtctggacattttctgaagaatgatgcgcccccaact 223

                                                                       
Query: 476 ctcttggctttggttggcaagggactcgggtttatggaaggcgcggattgggtgcgccac 535
           ||  ||||  |  | ||||||||| | |   |  |||||||| | |||||||||||||| 
Sbjct: 224 ctggtggccctaatgggcaagggattagtactcttggaaggcactgattgggtgcgccat 283

                                                            
Query: 536 cgtaggataatcaaccctgttttcaccattgataagctaaagatgatga 584
           || ||| |||||||||||| ||| | ||| || ||||| ||||||||||
Sbjct: 284 cgcagggtaatcaaccctgcttttaacatggacaagctcaagatgatga 332



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>ref|NM_184933.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1850

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                       
Query: 510 tggaaggcgcggattgggtgcgccaccgtaggataatcaaccctgttttcaccattgata 569
           |||||||||| ||||||||||| || |||||| |  ||| ||| | ||||||||| || |
Sbjct: 428 tggaaggcgcagattgggtgcggcatcgtagggtgctcaccccagctttcaccatggaca 487

                                     
Query: 570 agctaaagatgatgacgaaaacaatg 595
           |||||||| ||||||| |||||||||
Sbjct: 488 agctaaaggtgatgacaaaaacaatg 513



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 446 catttcgtgaagaacgatgcacaccca 472
           ||||||||||||||||| |||||||||
Sbjct: 364 catttcgtgaagaacgacgcacaccca 390



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>dbj|AK120700.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170M24, full
           insert sequence
          Length = 2167

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                       
Query: 510 tggaaggcgcggattgggtgcgccaccgtaggataatcaaccctgttttcaccattgata 569
           |||||||||| ||||||||||| || |||||| |  ||| ||| | ||||||||| || |
Sbjct: 463 tggaaggcgcagattgggtgcggcatcgtagggtgctcaccccagctttcaccatggaca 522

                                     
Query: 570 agctaaagatgatgacgaaaacaatg 595
           |||||||| ||||||| |||||||||
Sbjct: 523 agctaaaggtgatgacaaaaacaatg 548



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 446 catttcgtgaagaacgatgcacaccca 472
           ||||||||||||||||| |||||||||
Sbjct: 399 catttcgtgaagaacgacgcacaccca 425



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>dbj|AK101513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E16, full
           insert sequence
          Length = 1849

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                       
Query: 510 tggaaggcgcggattgggtgcgccaccgtaggataatcaaccctgttttcaccattgata 569
           |||||||||| ||||||||||| || |||||| |  ||| ||| | ||||||||| || |
Sbjct: 516 tggaaggcgcagattgggtgcggcatcgtagggtgctcaccccagctttcaccatggaca 575

                                     
Query: 570 agctaaagatgatgacgaaaacaatg 595
           |||||||| ||||||| |||||||||
Sbjct: 576 agctaaaggtgatgacaaaaacaatg 601



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 446 catttcgtgaagaacgatgcacaccca 472
           ||||||||||||||||| |||||||||
Sbjct: 452 catttcgtgaagaacgacgcacaccca 478



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                       
Query: 197      caagggatccatggaccctcctacaggttcttgaaaggctgcaacgaggacgtga 251
                ||||| |||| ||||||  |||||| |||||||||||||||||| ||||| ||||
Sbjct: 14397654 caaggaatccgtggaccaccctacaagttcttgaaaggctgcaatgaggatgtga 14397708



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                      
Query: 296      gaccacaagtacctcccgcggatcgcgccccactacctcaaatggagggctcag 349
                |||||||| ||||||||  |||| || || |||| |||||||||||||||||||
Sbjct: 14405904 gaccacaactacctcccaaggatagcacctcacttcctcaaatggagggctcag 14405957



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                             
Query: 510      tggaaggcgcggattgggtgcgccaccgtaggataatcaaccctg 554
                |||||||| | |||||||||||||| || ||| ||||||||||||
Sbjct: 14409137 tggaaggcactgattgggtgcgccatcgcagggtaatcaaccctg 14409181



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                         
Query: 521      gattgggtgcgccaccgtaggataatcaaccctgttttcaccattgataagctaaag 577
                ||||||| |||||| || ||  |||||||||||| ||||||||| |||||| |||||
Sbjct: 14398165 gattgggagcgccatcgcagagtaatcaaccctgctttcaccatggataagataaag 14398221



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                            
Query: 510      tggaaggcgcggattgggtgcgccaccgtaggataatcaaccctgttttcaccattgata 569
                |||||||||| ||||||||||| || |||||| |  ||| ||| | ||||||||| || |
Sbjct: 14392877 tggaaggcgcagattgggtgcggcatcgtagggtgctcaccccagctttcaccatggaca 14392936

                        
Query: 570      agctaaag 577
                ||||||||
Sbjct: 14392937 agctaaag 14392944



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 446      catttcgtgaagaacgatgcacaccca 472
                ||||||||||||||||| |||||||||
Sbjct: 14392813 catttcgtgaagaacgacgcacaccca 14392839



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 250      gaggagcatcaaggaggaga 269
                ||||||||||||||||||||
Sbjct: 22918978 gaggagcatcaaggaggaga 22918959



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>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete
              sequence
          Length = 158714

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                     
Query: 197    caagggatccatggaccctcctacaggttcttgaaaggctgcaacgaggacgtga 251
              ||||| |||| ||||||  |||||| |||||||||||||||||| ||||| ||||
Sbjct: 146883 caaggaatccgtggaccaccctacaagttcttgaaaggctgcaatgaggatgtga 146937



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                    
Query: 296    gaccacaagtacctcccgcggatcgcgccccactacctcaaatggagggctcag 349
              |||||||| ||||||||  |||| || || |||| |||||||||||||||||||
Sbjct: 155133 gaccacaactacctcccaaggatagcacctcacttcctcaaatggagggctcag 155186



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                           
Query: 510    tggaaggcgcggattgggtgcgccaccgtaggataatcaaccctg 554
              |||||||| | |||||||||||||| || ||| ||||||||||||
Sbjct: 158366 tggaaggcactgattgggtgcgccatcgcagggtaatcaaccctg 158410



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                       
Query: 521    gattgggtgcgccaccgtaggataatcaaccctgttttcaccattgataagctaaag 577
              ||||||| |||||| || ||  |||||||||||| ||||||||| |||||| |||||
Sbjct: 147394 gattgggagcgccatcgcagagtaatcaaccctgctttcaccatggataagataaag 147450



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                          
Query: 510    tggaaggcgcggattgggtgcgccaccgtaggataatcaaccctgttttcaccattgata 569
              |||||||||| ||||||||||| || |||||| |  ||| ||| | ||||||||| || |
Sbjct: 142106 tggaaggcgcagattgggtgcggcatcgtagggtgctcaccccagctttcaccatggaca 142165

                      
Query: 570    agctaaag 577
              ||||||||
Sbjct: 142166 agctaaag 142173



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 446    catttcgtgaagaacgatgcacaccca 472
              ||||||||||||||||| |||||||||
Sbjct: 142042 catttcgtgaagaacgacgcacaccca 142068



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                       
Query: 197      caagggatccatggaccctcctacaggttcttgaaaggctgcaacgaggacgtga 251
                ||||| |||| ||||||  |||||| |||||||||||||||||| ||||| ||||
Sbjct: 14392629 caaggaatccgtggaccaccctacaagttcttgaaaggctgcaatgaggatgtga 14392683



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                      
Query: 296      gaccacaagtacctcccgcggatcgcgccccactacctcaaatggagggctcag 349
                |||||||| ||||||||  |||| || || |||| |||||||||||||||||||
Sbjct: 14400879 gaccacaactacctcccaaggatagcacctcacttcctcaaatggagggctcag 14400932



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                             
Query: 510      tggaaggcgcggattgggtgcgccaccgtaggataatcaaccctg 554
                |||||||| | |||||||||||||| || ||| ||||||||||||
Sbjct: 14404112 tggaaggcactgattgggtgcgccatcgcagggtaatcaaccctg 14404156



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                         
Query: 521      gattgggtgcgccaccgtaggataatcaaccctgttttcaccattgataagctaaag 577
                ||||||| |||||| || ||  |||||||||||| ||||||||| |||||| |||||
Sbjct: 14393140 gattgggagcgccatcgcagagtaatcaaccctgctttcaccatggataagataaag 14393196



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                            
Query: 510      tggaaggcgcggattgggtgcgccaccgtaggataatcaaccctgttttcaccattgata 569
                |||||||||| ||||||||||| || |||||| |  ||| ||| | ||||||||| || |
Sbjct: 14387852 tggaaggcgcagattgggtgcggcatcgtagggtgctcaccccagctttcaccatggaca 14387911

                        
Query: 570      agctaaag 577
                ||||||||
Sbjct: 14387912 agctaaag 14387919



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 446      catttcgtgaagaacgatgcacaccca 472
                ||||||||||||||||| |||||||||
Sbjct: 14387788 catttcgtgaagaacgacgcacaccca 14387814



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 250      gaggagcatcaaggaggaga 269
                ||||||||||||||||||||
Sbjct: 22912006 gaggagcatcaaggaggaga 22911987



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>gb|AC087220.9| Oryza sativa chromosome 3 BAC OSJNBb0097F01 genomic sequence, complete
              sequence
          Length = 135594

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                    
Query: 296    gaccacaagtacctcccgcggatcgcgccccactacctcaaatggagggctcag 349
              |||||||| ||||||||  |||| || || |||| |||||||||||||||||||
Sbjct: 135477 gaccacaactacctcccaaggatagcacctcacttcctcaaatggagggctcag 135424



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                           
Query: 510    tggaaggcgcggattgggtgcgccaccgtaggataatcaaccctg 554
              |||||||| | |||||||||||||| || ||| ||||||||||||
Sbjct: 132244 tggaaggcactgattgggtgcgccatcgcagggtaatcaaccctg 132200



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>emb|AL592487.10| Human DNA sequence from clone RP11-290B1 on chromosome 1, complete
             sequence
          Length = 17462

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 65    cccatggccttccttgctgtg 85
             |||||||||||||||||||||
Sbjct: 14219 cccatggccttccttgctgtg 14199



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>ref|NM_117712.2| Arabidopsis thaliana protein translocase/ protein transporter
           AT4G16160 transcript variant AT4G16160.1 mRNA, complete
           cds
          Length = 744

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 173 gccatgagcaagtggttcag 192
           ||||||||||||||||||||
Sbjct: 470 gccatgagcaagtggttcag 489



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>ref|NM_179063.1| Arabidopsis thaliana protein translocase/ protein transporter
           AT4G16160 transcript variant AT4G16160.2 mRNA, complete
           cds
          Length = 762

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 173 gccatgagcaagtggttcag 192
           ||||||||||||||||||||
Sbjct: 488 gccatgagcaagtggttcag 507



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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
             genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 583   gacgaaaacaatgttggatt 602
             ||||||||||||||||||||
Sbjct: 58954 gacgaaaacaatgttggatt 58935



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>gb|BT011945.1| Arabidopsis thaliana At4g16160 mRNA sequence
          Length = 534

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 173 gccatgagcaagtggttcag 192
           ||||||||||||||||||||
Sbjct: 455 gccatgagcaagtggttcag 474



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>gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete
              sequence
          Length = 184783

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 250    gaggagcatcaaggaggaga 269
              ||||||||||||||||||||
Sbjct: 121508 gaggagcatcaaggaggaga 121489



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>emb|AL590710.14| Human DNA sequence from clone RP11-153P4 on chromosome 9 Contains the 3'
              end of the VAV2 gene for vav 2 oncogene, the 5' end of the
              SARDH gene for sarcosine dehydrogenase (SAR, SDH, SARD,
              DMGDHL1) and a CpG island, complete sequence
          Length = 118671

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     cagctctcactcacaccgcc 46
              ||||||||||||||||||||
Sbjct: 104150 cagctctcactcacaccgcc 104169



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>ref|XM_795710.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC594294 (LOC594294), mRNA
          Length = 390

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 577 gatgatgacgaaaacaatgttgga 600
           ||||||||||||||| ||||||||
Sbjct: 301 gatgatgacgaaaacgatgttgga 324



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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 91      cctcgttctggttgctctgctcgc 114
               ||||||||||||||| ||||||||
Sbjct: 2058685 cctcgttctggttgcgctgctcgc 2058662



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>emb|Z97340.2|ATFCA5 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 5
          Length = 209164

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    gccatgagcaagtggttcag 192
              ||||||||||||||||||||
Sbjct: 125317 gccatgagcaagtggttcag 125336



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>emb|Z67750.1|SC41KCIV S.cerevisiae DNA (cosmid 31A2; chromosome IV; 41 kb)
          Length = 41175

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 571   gctaaagatgatgacgaaaa 590
             ||||||||||||||||||||
Sbjct: 12366 gctaaagatgatgacgaaaa 12347



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>ref|XM_794924.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC578842 (LOC578842), mRNA
          Length = 534

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 577 gatgatgacgaaaacaatgttgga 600
           ||||||||||||||| ||||||||
Sbjct: 439 gatgatgacgaaaacgatgttgga 462



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>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 583   gacgaaaacaatgttggatt 602
             ||||||||||||||||||||
Sbjct: 55699 gacgaaaacaatgttggatt 55680



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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 583   gacgaaaacaatgttggatt 602
             ||||||||||||||||||||
Sbjct: 57640 gacgaaaacaatgttggatt 57621



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>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome
          Length = 1931047

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 18      cacaccacacagctctcact 37
               ||||||||||||||||||||
Sbjct: 1604570 cacaccacacagctctcact 1604589



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>emb|AL161543.2|ATCHRIV43 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 43
          Length = 198226

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   gccatgagcaagtggttcag 192
             ||||||||||||||||||||
Sbjct: 94307 gccatgagcaagtggttcag 94326



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>emb|BX901922.9| Zebrafish DNA sequence from clone DKEY-33C12 in linkage group 13,
             complete sequence
          Length = 242350

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 18    cacaccacacagctctcactcaca 41
             ||||||||||||| ||||||||||
Sbjct: 10660 cacaccacacagcgctcactcaca 10637



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>emb|BX511084.9| Zebrafish DNA sequence from clone DKEY-265C15 in linkage group 13,
             complete sequence
          Length = 156524

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 18    cacaccacacagctctcactcaca 41
             ||||||||||||| ||||||||||
Sbjct: 22641 cacaccacacagcgctcactcaca 22664



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>gb|AC097014.2| Homo sapiens chromosome 3 clone RP11-29M1, complete sequence
          Length = 143671

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    gccacaccacacagctctca 35
             ||||||||||||||||||||
Sbjct: 74378 gccacaccacacagctctca 74359



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 250      gaggagcatcaaggaggaga 269
                ||||||||||||||||||||
Sbjct: 26098702 gaggagcatcaaggaggaga 26098683



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 250      gaggagcatcaaggaggaga 269
                ||||||||||||||||||||
Sbjct: 16067165 gaggagcatcaaggaggaga 16067146



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>emb|BX828909.1|CNS0A2JG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL50ZA12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 734

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 173 gccatgagcaagtggttcag 192
           ||||||||||||||||||||
Sbjct: 469 gccatgagcaagtggttcag 488



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>gb|AY088334.1| Arabidopsis thaliana clone 5714 mRNA, complete sequence
          Length = 741

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 173 gccatgagcaagtggttcag 192
           ||||||||||||||||||||
Sbjct: 471 gccatgagcaagtggttcag 490



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>gb|AC025572.13|AC025572 Homo sapiens 3 BAC RP11-58O15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 191510

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     gccacaccacacagctctca 35
              ||||||||||||||||||||
Sbjct: 119854 gccacaccacacagctctca 119835



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>dbj|AP005256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0038F09
          Length = 166568

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   gaggagcatcaaggaggaga 269
             ||||||||||||||||||||
Sbjct: 37498 gaggagcatcaaggaggaga 37479



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>dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0040K22
          Length = 155832

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 250    gaggagcatcaaggaggaga 269
              ||||||||||||||||||||
Sbjct: 148567 gaggagcatcaaggaggaga 148548



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>emb|BX001022.9| Zebrafish DNA sequence from clone CH211-243O19, complete sequence
          Length = 160804

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 18    cacaccacacagctctcactcaca 41
             ||||||||||||| ||||||||||
Sbjct: 87187 cacaccacacagcgctcactcaca 87164



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 166     gccgtacgccatgagcaagt 185
               ||||||||||||||||||||
Sbjct: 1628694 gccgtacgccatgagcaagt 1628675



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>emb|Z74222.1|SCYDL174C S.cerevisiae chromosome IV reading frame ORF YDL174c
          Length = 2672

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 571 gctaaagatgatgacgaaaa 590
           ||||||||||||||||||||
Sbjct: 805 gctaaagatgatgacgaaaa 786



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>emb|X66052.1|SCDLDG S.cerevisiae DLD gene for D-lactate ferricytochrome c oxidoreductase
          Length = 2359

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 571  gctaaagatgatgacgaaaa 590
            ||||||||||||||||||||
Sbjct: 1402 gctaaagatgatgacgaaaa 1421



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>gb|AC105065.13| Mus musculus chromosome 18, clone RP24-459E1, complete sequence
          Length = 154308

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    ccacacagctctcactcaca 41
             ||||||||||||||||||||
Sbjct: 46182 ccacacagctctcactcaca 46163



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>gb|DQ332540.1| Synthetic construct Saccharomyces cerevisiae clone FLH201473.01X DLD1
            gene, complete sequence
          Length = 1764

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 571  gctaaagatgatgacgaaaa 590
            ||||||||||||||||||||
Sbjct: 1267 gctaaagatgatgacgaaaa 1286



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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 253     gagcatcaaggaggagaccgaccg 276
               ||||||||||||||||| ||||||
Sbjct: 2116778 gagcatcaaggaggagatcgaccg 2116801



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>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11,
              complete sequence
          Length = 163039

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 250    gaggagcatcaaggaggaga 269
              ||||||||||||||||||||
Sbjct: 133029 gaggagcatcaaggaggaga 133010



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>gb|AC125210.4| Mus musculus BAC clone RP23-148P22 from 18, complete sequence
          Length = 210193

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    ccacacagctctcactcaca 41
             ||||||||||||||||||||
Sbjct: 20265 ccacacagctctcactcaca 20284



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>emb|CR352308.33| Zebrafish DNA sequence from clone CH211-195H3 in linkage group 8,
              complete sequence
          Length = 202242

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 547    caaccctgttttcaccattgataa 570
              |||||||||||||| |||||||||
Sbjct: 134424 caaccctgttttcaacattgataa 134447



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>gb|AC002297.1|AC002297 Genomic sequence from Human 9q34, complete sequence
          Length = 37249

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    cagctctcactcacaccgcc 46
             ||||||||||||||||||||
Sbjct: 10305 cagctctcactcacaccgcc 10286


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,201,169
Number of Sequences: 3902068
Number of extensions: 4201169
Number of successful extensions: 73507
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73114
Number of HSP's gapped (non-prelim): 393
length of query: 607
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 584
effective length of database: 17,143,297,704
effective search space: 10011685859136
effective search space used: 10011685859136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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