ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baaln01 |
|---|---|
| Clone Library Name | barley_pub |
>SMT3_ORYSA (P55857) Ubiquitin-like protein SMT3| Length = 100 Score = 179 bits (453), Expect = 7e-45 Identities = 86/92 (93%), Positives = 91/92 (98%), Gaps = 1/92 (1%) Frame = +1 Query: 121 DEDKKPAG-DGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLF 297 +EDKKPAG +GGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD+N+IAFLF Sbjct: 6 EEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLF 65 Query: 298 DGRRLRGEQTPDELEMEEGDEIDAMLHQTGGC 393 DGRRLRGEQTPDELEME+GDEIDAMLHQTGGC Sbjct: 66 DGRRLRGEQTPDELEMEDGDEIDAMLHQTGGC 97
>SMT3_ARATH (P55852) Ubiquitin-like protein SMT3| Length = 100 Score = 166 bits (420), Expect = 5e-41 Identities = 83/90 (92%), Positives = 87/90 (96%) Frame = +1 Query: 121 DEDKKPAGDGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFD 300 +EDKKP GDGG AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD+NSIAFLFD Sbjct: 6 EEDKKP-GDGG-AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFD 63 Query: 301 GRRLRGEQTPDELEMEEGDEIDAMLHQTGG 390 GRRLR EQTPDEL+ME+GDEIDAMLHQTGG Sbjct: 64 GRRLRAEQTPDELDMEDGDEIDAMLHQTGG 93
>PMT3_SCHPO (O13351) Ubiquitin-like protein pmt3/smt3 precursor| Length = 117 Score = 112 bits (281), Expect = 6e-25 Identities = 53/96 (55%), Positives = 71/96 (73%) Frame = +1 Query: 106 SGVTADEDKKPAGDGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSI 285 +G T+ +D KP+ + HINLKV GQD NEVFF+IK++T+ KLM YC RQ +NS+ Sbjct: 21 TGDTSQQDVKPSTE----HINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSL 76 Query: 286 AFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGGC 393 FL DG R+R +QTP EL+ME+GD+I+A+L Q GGC Sbjct: 77 RFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGGC 112
>SUMO2_RAT (P61959) Small ubiquitin-related modifier 2 precursor (SUMO-2)| (Ubiquitin-like protein SMT3B) (SMT3 homolog 2) (Sentrin-2) Length = 95 Score = 90.1 bits (222), Expect = 4e-18 Identities = 43/79 (54%), Positives = 53/79 (67%) Frame = +1 Query: 160 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRGEQTPDEL 339 HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP +L Sbjct: 17 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 76 Query: 340 EMEEGDEIDAMLHQTGGCF 396 EME+ D ID QTGG + Sbjct: 77 EMEDEDTIDVFQQQTGGVY 95
>SUMO2_PIG (P61958) Small ubiquitin-related modifier 2 precursor (SUMO-2)| (Ubiquitin-like protein SMT3B) (SMT3 homolog 2) (Sentrin-2) (MIF2 suppressor) Length = 95 Score = 90.1 bits (222), Expect = 4e-18 Identities = 43/79 (54%), Positives = 53/79 (67%) Frame = +1 Query: 160 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRGEQTPDEL 339 HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP +L Sbjct: 17 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 76 Query: 340 EMEEGDEIDAMLHQTGGCF 396 EME+ D ID QTGG + Sbjct: 77 EMEDEDTIDVFQQQTGGVY 95
>SUMO2_MOUSE (P61957) Small ubiquitin-related modifier 2 precursor (SUMO-2)| (Ubiquitin-like protein SMT3B) (SMT3 homolog 2) (Sentrin-2) Length = 95 Score = 90.1 bits (222), Expect = 4e-18 Identities = 43/79 (54%), Positives = 53/79 (67%) Frame = +1 Query: 160 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRGEQTPDEL 339 HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP +L Sbjct: 17 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 76 Query: 340 EMEEGDEIDAMLHQTGGCF 396 EME+ D ID QTGG + Sbjct: 77 EMEDEDTIDVFQQQTGGVY 95
>SUMO2_HUMAN (P61956) Small ubiquitin-related modifier 2 precursor (SUMO-2)| (Ubiquitin-like protein SMT3B) (SMT3 homolog 2) (Sentrin-2) (HSMT3) Length = 95 Score = 90.1 bits (222), Expect = 4e-18 Identities = 43/79 (54%), Positives = 53/79 (67%) Frame = +1 Query: 160 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRGEQTPDEL 339 HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP +L Sbjct: 17 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 76 Query: 340 EMEEGDEIDAMLHQTGGCF 396 EME+ D ID QTGG + Sbjct: 77 EMEDEDTIDVFQQQTGGVY 95
>SUMO2_CRIGR (Q6LDZ8) Small ubiquitin-related modifier 2 precursor (SUMO-2)| (Ubiquitin-like protein SMT3B) (SMT3 homolog 2) (Sentrin-2) (MIF2 suppressor) Length = 95 Score = 90.1 bits (222), Expect = 4e-18 Identities = 43/79 (54%), Positives = 53/79 (67%) Frame = +1 Query: 160 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRGEQTPDEL 339 HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP +L Sbjct: 17 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 76 Query: 340 EMEEGDEIDAMLHQTGGCF 396 EME+ D ID QTGG + Sbjct: 77 EMEDEDTIDVFQQQTGGVY 95
>SUMO2_BOVIN (P61955) Small ubiquitin-related modifier 2 precursor (SUMO-2)| (Ubiquitin-like protein SMT3B) (SMT3 homolog 2) (Sentrin-2) Length = 95 Score = 90.1 bits (222), Expect = 4e-18 Identities = 43/79 (54%), Positives = 53/79 (67%) Frame = +1 Query: 160 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRGEQTPDEL 339 HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP +L Sbjct: 17 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 76 Query: 340 EMEEGDEIDAMLHQTGGCF 396 EME+ D ID QTGG + Sbjct: 77 EMEDEDTIDVFQQQTGGVY 95
>SUMO1_PONPY (Q5R6J4) Small ubiquitin-related modifier 1 precursor (SUMO-1)| Length = 101 Score = 89.7 bits (221), Expect = 6e-18 Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 5/96 (5%) Frame = +1 Query: 118 ADEDKKPAGDG-----GGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNS 282 +D++ KP+ + G +I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS Sbjct: 2 SDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNS 61 Query: 283 IAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 390 + FLF+G+R+ TP EL MEE D I+ QTGG Sbjct: 62 LRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
>SUMO1_MOUSE (P63166) Small ubiquitin-related modifier 1 precursor (SUMO-1)| (Ubiquitin-like protein SMT3C) (SMT3 homolog 3) (Ubiquitin-homology domain protein PIC1) Length = 101 Score = 89.7 bits (221), Expect = 6e-18 Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 5/96 (5%) Frame = +1 Query: 118 ADEDKKPAGDG-----GGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNS 282 +D++ KP+ + G +I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS Sbjct: 2 SDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNS 61 Query: 283 IAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 390 + FLF+G+R+ TP EL MEE D I+ QTGG Sbjct: 62 LRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
>SUMO1_HUMAN (P63165) Small ubiquitin-related modifier 1 precursor (SUMO-1)| (Ubiquitin-like protein SMT3C) (SMT3 homolog 3) (Ubiquitin-homology domain protein PIC1) (Ubiquitin-like protein UBL1) (GAP-modifying protein 1) (GMP1) (Sentrin) Length = 101 Score = 89.7 bits (221), Expect = 6e-18 Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 5/96 (5%) Frame = +1 Query: 118 ADEDKKPAGDG-----GGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNS 282 +D++ KP+ + G +I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS Sbjct: 2 SDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNS 61 Query: 283 IAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 390 + FLF+G+R+ TP EL MEE D I+ QTGG Sbjct: 62 LRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
>SUMO1_BOVIN (Q5E9D1) Small ubiquitin-related modifier 1 precursor (SUMO-1)| Length = 101 Score = 89.7 bits (221), Expect = 6e-18 Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 5/96 (5%) Frame = +1 Query: 118 ADEDKKPAGDG-----GGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNS 282 +D++ KP+ + G +I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS Sbjct: 2 SDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNS 61 Query: 283 IAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 390 + FLF+G+R+ TP EL MEE D I+ QTGG Sbjct: 62 LRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
>SUMO3_MOUSE (Q9Z172) Small ubiquitin-related modifier 3 precursor (SUMO-3)| (Ubiquitin-like protein SMT3A) (SMT3 homolog 1) Length = 110 Score = 89.7 bits (221), Expect = 6e-18 Identities = 44/81 (54%), Positives = 53/81 (65%) Frame = +1 Query: 160 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRGEQTPDEL 339 HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP +L Sbjct: 16 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 75 Query: 340 EMEEGDEIDAMLHQTGGCFRR 402 EME+ D ID QTGG R Sbjct: 76 EMEDEDTIDVFQQQTGGSASR 96
>SUMO3_HUMAN (P55854) Small ubiquitin-related modifier 3 precursor (SUMO-3)| (Ubiquitin-like protein SMT3A) (SMT3 homolog 1) Length = 103 Score = 89.4 bits (220), Expect = 7e-18 Identities = 43/77 (55%), Positives = 52/77 (67%) Frame = +1 Query: 160 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRGEQTPDEL 339 HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP +L Sbjct: 16 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 75 Query: 340 EMEEGDEIDAMLHQTGG 390 EME+ D ID QTGG Sbjct: 76 EMEDEDTIDVFQQQTGG 92
>SUMO1_CERNI (Q9MZD5) Small ubiquitin-related modifier 1 precursor (SUMO-1)| (Sentrin) Length = 101 Score = 89.4 bits (220), Expect = 7e-18 Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 5/96 (5%) Frame = +1 Query: 118 ADEDKKPAGDG-----GGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNS 282 +D++ KP+ + G +I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS Sbjct: 2 SDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNS 61 Query: 283 IAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 390 + FLF+G+R+ TP EL MEE D I+ QTGG Sbjct: 62 LRFLFEGQRIADNHTPKELGMEEEDVIEVYHEQTGG 97
>SMT3_CAEEL (P55853) Ubiquitin-like protein SMT3| Length = 91 Score = 85.9 bits (211), Expect = 8e-17 Identities = 43/89 (48%), Positives = 55/89 (61%) Frame = +1 Query: 124 EDKKPAGDGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDG 303 +D AGD +I +KV GQD NEV FR+K T + KL +Y DR V +NS+ FLFDG Sbjct: 3 DDAAQAGDNA-EYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDG 61 Query: 304 RRLRGEQTPDELEMEEGDEIDAMLHQTGG 390 RR+ + TP LEME+ D I+ Q GG Sbjct: 62 RRINDDDTPKTLEMEDDDVIEVYQEQLGG 90
>SUMO4_HUMAN (Q6EEV6) Small ubiquitin-related modifier 4 precursor (SUMO-4)| (Small ubiquitin-like protein 4) Length = 95 Score = 81.6 bits (200), Expect = 2e-15 Identities = 39/79 (49%), Positives = 50/79 (63%) Frame = +1 Query: 160 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRGEQTPDEL 339 HINLKV GQDG+ V F+IKR T L KLM AYC+ + + + I F F G+ + G P +L Sbjct: 17 HINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSMKQIRFRFGGQPISGTDKPAQL 76 Query: 340 EMEEGDEIDAMLHQTGGCF 396 EME+ D ID TGG + Sbjct: 77 EMEDEDTIDVFQQPTGGVY 95
>SMT3_YEAST (Q12306) Ubiquitin-like protein SMT3 precursor| Length = 101 Score = 79.3 bits (194), Expect = 8e-15 Identities = 38/78 (48%), Positives = 59/78 (75%), Gaps = 1/78 (1%) Frame = +1 Query: 160 HINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRGEQTPDE 336 HINLKV DG+ E+FF+IK++T L++LM A+ RQ +++S+ FL+DG R++ +QTP++ Sbjct: 23 HINLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPED 80 Query: 337 LEMEEGDEIDAMLHQTGG 390 L+ME+ D I+A Q GG Sbjct: 81 LDMEDNDIIEAHREQIGG 98
>ESC2_YEAST (Q06340) Protein ESC2 (Establishes silent chromatin protein 2)| Length = 456 Score = 34.7 bits (78), Expect = 0.21 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +1 Query: 163 INLKVKGQDGNEVFFRIKRSTQLKKLMNAY-CDRQSVDLNSIAFLFDGRRLRGEQTPDEL 339 + + + GQD +++ ++RST K+ Y +Q + LFD L + + Sbjct: 384 MRIALMGQDNKKIYVHVRRSTPFSKIAEYYRIQKQLPQKTRVKLLFDHDELDMNECIADQ 443 Query: 340 EMEEGDEIDAML 375 +ME+ D +D ++ Sbjct: 444 DMEDEDMVDVII 455
>UNC5B_MOUSE (Q8K1S3) Netrin receptor UNC5B precursor (Unc-5 homolog B) (Unc-5| homolog 2) Length = 945 Score = 32.0 bits (71), Expect = 1.4 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = -3 Query: 179 LTLRLMWAPPPSPAGFLSSSAVTPDXLPATP 87 L L L W P PS AG S+ V PD P+ P Sbjct: 13 LALLLCWDPTPSLAGVDSAGQVLPDSYPSAP 43
>PRIS_PYRAE (Q8ZTY1) Probable DNA primase small subunit (EC 2.7.7.-)| Length = 312 Score = 30.8 bits (68), Expect = 3.1 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Frame = -2 Query: 369 GINLIAFFHLKLVGGLLTTEPTTIKKERNGIEIHRLAVTVGIHQLLELCGSLDAEENLIA 190 G + + + VG LL + +EI + VT IH+L+ GSL+ + L+A Sbjct: 182 GRRKVVLYEEEAVGNLLRIKQGVEDARAMKVEIDEV-VTQDIHRLIRAPGSLNGKTGLVA 240 Query: 189 ILPLDL-EVDVGASAVARGLLVLVRRHAR 106 LP+ L E+D G + + + H + Sbjct: 241 -LPISLKELDKGVEYIVDKAIAFRKGHLK 268
>UNC5B_RAT (O08722) Netrin receptor UNC5B precursor (Unc-5 homolog B) (Unc-5| homolog 2) Length = 945 Score = 30.8 bits (68), Expect = 3.1 Identities = 14/31 (45%), Positives = 15/31 (48%) Frame = -3 Query: 179 LTLRLMWAPPPSPAGFLSSSAVTPDXLPATP 87 L L L W P PS AG S PD P+ P Sbjct: 13 LALLLCWDPTPSLAGIDSGGQALPDSFPSAP 43
>RLPA_YERPE (Q8ZDG6) Rare lipoprotein A precursor| Length = 360 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/30 (50%), Positives = 15/30 (50%) Frame = -3 Query: 158 APPPSPAGFLSSSAVTPDXLPATPQCCAAP 69 AP P PAG L SS D P TP A P Sbjct: 244 APTPVPAGVLESSEPVIDSAPVTPPVVANP 273
>VRP1_YEAST (P37370) Verprolin| Length = 817 Score = 30.0 bits (66), Expect = 5.3 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = -3 Query: 206 KKTSLPSCPLTLRLMWAPPPSPAGFLSSSAVTPDXLPATPQCCAAPP 66 K +S+P+ P PPP P F +SSA++ +P P PP Sbjct: 391 KASSMPAPPPP------PPPPPGAFSTSSALSASSIPLAPLPPPPPP 431
>ESC2_ASHGO (Q756K3) Protein ESC2 (Establishes silent chromatin protein 2)| Length = 407 Score = 29.6 bits (65), Expect = 6.9 Identities = 15/72 (20%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = +1 Query: 163 INLKVKGQDGNEVFFRIKRSTQLKKLMNAY-CDRQSVDLNSIAFLFDGRRLRGEQTPDEL 339 + + + G D +VF ++ +T L K+ Y ++ ++ +FD + + T + Sbjct: 335 LKIVLLGSDNKKVFIHVRPTTTLLKVAEHYRVAKELPPTVQLSLMFDHEEIDLDDTICNI 394 Query: 340 EMEEGDEIDAML 375 ++E+GD I+ ++ Sbjct: 395 DIEDGDIIEVVV 406
>VG21_ICHV1 (Q00114) Hypothetical gene 21 protein| Length = 296 Score = 29.6 bits (65), Expect = 6.9 Identities = 17/41 (41%), Positives = 19/41 (46%) Frame = -3 Query: 188 SCPLTLRLMWAPPPSPAGFLSSSAVTPDXLPATPQCCAAPP 66 S PLT W PPPSP L +TP L + C PP Sbjct: 76 SLPLT-DTPWGPPPSPMDALGHGVMTPSGL----KWCPPPP 111
>UNC5B_HUMAN (Q8IZJ1) Netrin receptor UNC5B precursor (Unc-5 homolog B) (Unc-5| homolog 2) (p53-regulated receptor for death and life protein 1) Length = 945 Score = 29.6 bits (65), Expect = 6.9 Identities = 15/31 (48%), Positives = 16/31 (51%) Frame = -3 Query: 179 LTLRLMWAPPPSPAGFLSSSAVTPDXLPATP 87 L L L W P S AG S S V PD P+ P Sbjct: 13 LALLLCWDPRLSQAGTDSGSEVLPDSFPSAP 43
>SNF7_NEUCR (Q871Y8) Vacuolar sorting protein snf-7 (Vacuolar protein| sorting-associated protein vps-32) Length = 228 Score = 29.3 bits (64), Expect = 9.0 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = +1 Query: 301 GRRLRGEQTPDELEMEEGDEIDAMLHQTGG 390 G+ + + DELE + +E+D+ LH+TGG Sbjct: 154 GQPIDEGELEDELEKLQQEEVDSKLHETGG 183
>AROC_METAC (Q8TT87) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 365 Score = 29.3 bits (64), Expect = 9.0 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 3/86 (3%) Frame = +1 Query: 142 GDGGGAHINLKVKGQD---GNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRL 312 GD G + L VKG G VF R+ L A +V I F+ R+ Sbjct: 203 GDSVGGIVELIVKGVPAGLGEPVFDRLDAD-----LSKALMSIPAVKGFEIGAGFEAARM 257 Query: 313 RGEQTPDELEMEEGDEIDAMLHQTGG 390 RG + D ME+G EI + GG Sbjct: 258 RGSEMNDPFRMEQG-EITCSKNNAGG 282 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,350,851 Number of Sequences: 219361 Number of extensions: 1482697 Number of successful extensions: 5913 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 5231 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5902 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
