>AROK_ARATH (Q9SJ05) Probable shikimate kinase, chloroplast precursor (EC|
           2.7.1.71)
          Length = 292

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 44/155 (28%), Positives = 80/155 (51%), Gaps = 4/155 (2%)
 Frame = +1

Query: 100 LLEDVLGGKDALAAFRESDEKGYLEVETEGLKQLTSMGSLVLCCGDGAVMNSTNLGLLRH 279
           L+E  + G      F    E  +   ET+ LK+L+S   +V+  G GAV+   N   +  
Sbjct: 136 LIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHK 195

Query: 280 GVSIWIDVPLELAVNDM----LKSKGAAAISDPDSFSQAMAKLRQRYDDLKERYAVSDVT 447
           G+SIW+DVPLE   + +      S+        D++S A  +L   +D+  E Y  ++  
Sbjct: 196 GISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANAR 255

Query: 448 VSLQNVASQLGYSSIDSLSLEDMVVEIVSRIEKLI 552
           VSL+N+A++ GY ++  L+  ++ +E+   + +L+
Sbjct: 256 VSLENIAAKRGYKNVSDLTPTEIAIEVSQVLSQLL 290

>AROK_LYCES (Q00497) Shikimate kinase, chloroplast precursor (EC 2.7.1.71)|
          Length = 300

 Score = 63.5 bits (153), Expect = 5e-10
 Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 4/158 (2%)
 Frame = +1

Query: 100 LLEDVLGGKDALAAFRESDEKGYLEVETEGLKQLTSMGSLVLCCGDGAVMNSTNLGLLRH 279
           L+E  +GG      F    E  + + ETE L +L+ M  LV+  G GAV+   N   +  
Sbjct: 138 LIEQAVGGITVAEIFELRGESFFRDNETEVLHKLSLMHRLVVSTGGGAVVRPINWRHMHK 197

Query: 280 GVSIWIDVPLEL----AVNDMLKSKGAAAISDPDSFSQAMAKLRQRYDDLKERYAVSDVT 447
           G+S+W+DVPLE        +  KS+        D +   + +L    +   E YA +   
Sbjct: 198 GISVWLDVPLEALAKRITTEGTKSRPLLHEESGDVYDTTLKRLTTLMETRGENYANASAR 257

Query: 448 VSLQNVASQLGYSSIDSLSLEDMVVEIVSRIEKLIQAK 561
           VSL+N+A +     +  ++  ++ +E++ +IE  ++ +
Sbjct: 258 VSLENIALK-REKDVCHITPAEITLEVLIQIENFLKTQ 294

>AROK_ANASP (Q8YXG9) Shikimate kinase (EC 2.7.1.71) (SK)|
          Length = 181

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 25/88 (28%), Positives = 44/88 (50%)
 Frame = +1

Query: 142 FRESDEKGYLEVETEGLKQLTSMGSLVLCCGDGAVMNSTNLGLLRHGVSIWIDVPLELAV 321
           F E+ E G+ ++E++ L Q+ S   L +  G G V+   N   L HG+ +W+DVP+++  
Sbjct: 54  FAEAGEAGFRQIESDVLAQVCSYTKLTVATGGGIVLRRENWSYLHHGLILWLDVPVDILY 113

Query: 322 NDMLKSKGAAAISDPDSFSQAMAKLRQR 405
             +        + D D   +  + L QR
Sbjct: 114 ARLAADTTRPLLQDDDPKGKLRSLLEQR 141

>AROK_SYNY3 (P72796) Shikimate kinase (EC 2.7.1.71) (SK)|
          Length = 189

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 34/120 (28%), Positives = 55/120 (45%)
 Frame = +1

Query: 100 LLEDVLGGKDALAAFRESDEKGYLEVETEGLKQLTSMGSLVLCCGDGAVMNSTNLGLLRH 279
           +L + + GK     F E  E  + ++ETE L  L +    V+  G G V+   N   L H
Sbjct: 45  VLIERVAGKAIADIFAEDGEDTFRDLETEVLGHLAAQTRSVIATGGGVVLRRQNWSYLHH 104

Query: 280 GVSIWIDVPLELAVNDMLKSKGAAAISDPDSFSQAMAKLRQRYDDLKERYAVSDVTVSLQ 459
           G+ IW+D  LEL +   L+   A  +   ++  + +  L  +   L   YA +D+   LQ
Sbjct: 105 GLVIWLDGSLELLL-ARLQGDEARPLLQVENLEERLGNLLAQRQPL---YAQADLRFPLQ 160

>AROK_SYNEL (Q8DKH7) Shikimate kinase (EC 2.7.1.71) (SK)|
          Length = 183

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 21/56 (37%), Positives = 32/56 (57%)
 Frame = +1

Query: 142 FRESDEKGYLEVETEGLKQLTSMGSLVLCCGDGAVMNSTNLGLLRHGVSIWIDVPL 309
           F +  E  + E+E + L Q++S   LV+  G G V+N  N   L HG+ +W+ VPL
Sbjct: 56  FAQEGEPAFRELEQQVLAQVSSYHHLVVATGGGIVLNPMNWSYLHHGIVVWLHVPL 111

>AROK_ACIAD (Q6F7E4) Shikimate kinase (EC 2.7.1.71) (SK)|
          Length = 180

 Score = 38.5 bits (88), Expect = 0.016
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
 Frame = +1

Query: 142 FRESDEKGYLEVETEGLKQLTSMGSLVLCCGDGAVMNSTNLGLLR-HGVSIWIDVPLELA 318
           F +  E G+   ET  L  LTS   LVL  G G V    N   L+  GV +++  P+EL 
Sbjct: 56  FEKEGEIGFRSRETIVLDDLTSRRDLVLATGGGVVTQPANRSYLKTRGVVVYLYTPVELQ 115

Query: 319 VNDMLKSKG--AAAISDPDSFSQAMAKLR 399
           +    + K      + +P+   + + KLR
Sbjct: 116 LQRTYRDKNRPLLQVENPEQRLRDLLKLR 144

>AROK_AQUAE (O67925) Shikimate kinase (EC 2.7.1.71) (SK)|
          Length = 168

 Score = 38.5 bits (88), Expect = 0.016
 Identities = 23/104 (22%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
 Frame = +1

Query: 142 FRESDEKGYLEVETEGLKQLTSMGSLVLCCGDGAVMNSTNLGLLR-HGVSIWIDVPLELA 318
           F +  E  + ++E E LK L+   ++V+  G G   N   L  ++  G +++ID+P E+ 
Sbjct: 47  FEKKGEAYFRKLEFEVLKDLSEKENVVISTGGGLGANEEALNFMKSRGTTVFIDIPFEVF 106

Query: 319 VNDMLKSKGAAAISDPDSFSQAMAKLRQRYDDLKERYAVSDVTV 450
           +     SK    +  P      + +++  +++ ++ Y+ +D+ V
Sbjct: 107 LERCKDSKERPLLKRP------LDEIKNLFEERRKIYSKADIKV 144

>AROK_NEIMB (P63600) Putative shikimate kinase (EC 2.7.1.71)|
          Length = 170

 Score = 38.5 bits (88), Expect = 0.016
 Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
 Frame = +1

Query: 142 FRESDEKGYLEVETEGLKQLTSMGSLVLCCGDGAVMNSTNLGLLR-HGVSIWIDVPLELA 318
           F    E+G+   ET  LK+L  +  +VL  G GAV+   N  L+R  G  +++  P E  
Sbjct: 52  FEMEGEQGFRSRETAILKKLVILPHIVLSTGGGAVLKEENRALIRKSGTVVYLHAPPETL 111

Query: 319 VNDML--KSKGAAAISDPDSFSQAMAKLRQRYDDLKERY-AVSDVTVSLQN 462
           +       S+    ++DP      +AKLR+ Y      Y   +D TV   N
Sbjct: 112 LERTRCDNSRPLLQVADP------LAKLRELYAARDPVYRQTADFTVESAN 156

>AROK_NEIMA (P63599) Putative shikimate kinase (EC 2.7.1.71)|
          Length = 170

 Score = 38.5 bits (88), Expect = 0.016
 Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
 Frame = +1

Query: 142 FRESDEKGYLEVETEGLKQLTSMGSLVLCCGDGAVMNSTNLGLLR-HGVSIWIDVPLELA 318
           F    E+G+   ET  LK+L  +  +VL  G GAV+   N  L+R  G  +++  P E  
Sbjct: 52  FEMEGEQGFRSRETAILKKLVILPHIVLSTGGGAVLKEENRALIRKSGTVVYLHAPPETL 111

Query: 319 VNDML--KSKGAAAISDPDSFSQAMAKLRQRYDDLKERY-AVSDVTVSLQN 462
           +       S+    ++DP      +AKLR+ Y      Y   +D TV   N
Sbjct: 112 LERTRCDNSRPLLQVADP------LAKLRELYAARDPVYRQTADFTVESAN 156

>AROK_NEIGO (O50467) Shikimate kinase (EC 2.7.1.71) (SK) (Fragment)|
          Length = 134

 Score = 38.1 bits (87), Expect = 0.021
 Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
 Frame = +1

Query: 142 FRESDEKGYLEVETEGLKQLTSMGSLVLCCGDGAVMNSTNLGLLR-HGVSIWIDVPLELA 318
           F    E+G+   ET  LK+L  +  +VL  G GAV+   N  L+R  G  +++  P E  
Sbjct: 16  FEMEGEQGFRSRETAILKKLIVLPHIVLSTGGGAVLKEENRALIRKSGTVVYLHAPPETL 75

Query: 319 VNDML--KSKGAAAISDPDSFSQAMAKLRQRYDDLKERY-AVSDVTVSLQN 462
           +       S+    ++DP      +AKLR+ Y      Y   +D TV   N
Sbjct: 76  LERTRCDNSRPLLQVADP------LAKLRELYAARDPVYRQTADFTVESAN 120

>AROK_CORGL (Q9X5D1) Shikimate kinase (EC 2.7.1.71) (SK)|
          Length = 169

 Score = 37.0 bits (84), Expect = 0.046
 Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
 Frame = +1

Query: 121 GKDALAAFRESDEKGYLEVETEGLKQ-LTSMGSLVLCCGDGAVMNSTNLGLLRHGVSIWI 297
           GK   A F E  E  + E+E   + + L S G  V+  G G+V+  +   LL+    +WI
Sbjct: 43  GKACGAVFSELGEPAFRELEAIHVAEALKSSG--VVSLGGGSVLTESTRELLKGQDVVWI 100

Query: 298 DVPLELAVNDML--KSKGAAAISDPDSFSQAMAKLR-QRYDDLKERYAVSDVTVSLQNVA 468
           DVP+E  +      +S+     +DP    + + K+R   Y+++      ++     Q VA
Sbjct: 101 DVPVEEGIRRTANERSRPVLQAADPAEHYRNLVKVRTPLYEEVATYRLRTNNRSPQQVVA 160

Query: 469 SQLGYSSID 495
           + L +  ID
Sbjct: 161 AVLHHLEID 169

>DUSC_VIBPA (Q87N01) tRNA-dihydrouridine synthase C (EC 1.-.-.-)|
          Length = 322

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = +1

Query: 196 QLTSMGSLVLCCGDGAVMNSTNLGLLRHGVSIWIDVPLELAVNDMLKSKGAAAISDPDSF 375
           + T + SL++C G   + N  N+    H   +W DV   L      + KG   +  P+  
Sbjct: 214 ETTGVDSLMVCRGAFNIPNLGNMVKHNHTPMVWSDVVDLLIYYSKFEMKGDKGLYYPNRV 273

Query: 376 SQAMAKLRQRYDDLKERY 429
            Q  A LRQ Y +  E +
Sbjct: 274 KQWFAYLRQSYPEANELF 291

>SYI_CLOPE (Q8XHE4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
            ligase) (IleRS)
          Length = 1039

 Score = 33.5 bits (75), Expect = 0.51
 Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
 Frame = +1

Query: 409  DDLKERYAVSDVTVSLQNVASQLGYSSIDSLSL----EDMVVEIVSRIEKLIQAKAMME 573
            D+L+E   V ++   +QN+  + G+   D ++L     DM+++++ + E +I+ + + E
Sbjct: 953  DELREEGHVREIISKIQNMRKESGFEVADKITLYVAENDMLLDVIKKFEDVIKKETLTE 1011

>SYC2_NOCFA (Q5YVL0) Putative cysteinyl-tRNA synthetase 2 (EC 6.1.1.16)|
           (Cysteine--tRNA ligase 2) (CysRS 2)
          Length = 412

 Score = 33.1 bits (74), Expect = 0.66
 Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
 Frame = +1

Query: 184 EGLKQLTSMGSLVLCCG---DGAVMNSTNLGLLRHGVS---IWIDVPLELAVNDMLKSKG 345
           +G K   S G+LVL      DG    +  LGLL        +W D  LE A+  + + + 
Sbjct: 286 DGEKMSKSRGNLVLVSTLRKDGVDPAAIRLGLLDGHYRQDRMWTDAVLEAALARLARWRS 345

Query: 346 AAAISDPDSFSQAMAKLRQRY-DDLKERYAVSDVTVSLQNVASQLGYSSIDS 498
           A A+S   +    +A+LRQ   DDL    A++ V      V   L Y   DS
Sbjct: 346 ATALSAGPAAHDTIARLRQHLADDLDSPKALAAVD---NWVTEALDYGGSDS 394

>ANT1_ONCVO (P21249) Major antigen (Myosin-like antigen)|
          Length = 2022

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
 Frame = +1

Query: 325  DMLKSKGAAAISDPDSFSQAMAKLRQRYDDLKERY-----AVSDVTVSLQNVASQLGYSS 489
            D LK K   +I +   +S A+ KLR  YD L+  Y        ++T ++Q++ S+L  S 
Sbjct: 1156 DRLKQKLQRSIENAKKYSDALDKLRPEYDRLQNLYREKIKQAENLTQAVQDLESRLNQSR 1215

Query: 490  IDSLSLEDMVV-------EIVSRIEKL 549
             +     D ++        + S +EKL
Sbjct: 1216 RELRDATDKLIASEGDRNALRSEVEKL 1242

>INSK_ECOLI (P19769) Putative transposase insK for insertion sequence element|
           IS150
          Length = 283

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 352 AISDPDSFSQAMAKLRQRYDDLKERYAVSDVTVSLQNVASQLGYSSIDSL 501
           A+S PD ++    ++ + Y + + RY    VT+SL     Q+ + ++  L
Sbjct: 33  ALSKPDKYADVKKRISEIYHENRGRYGYRRVTLSLHREGKQINHKAVQRL 82

>AROK_COREF (Q8FT30) Shikimate kinase (EC 2.7.1.71) (SK)|
          Length = 169

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
 Frame = +1

Query: 121 GKDALAAFRESDEKGYLEVETEGLKQLTSMGSLVLCCGDGAVMNSTNLGLLRHGVSIWID 300
           GK     F E  E  + E+E   + +  +   +V   G GA++  +   LLR    +WID
Sbjct: 43  GKACGEVFSELGEPAFRELEAHHVAEALNHDGVV-SLGGGAILTESTRELLREHDVVWID 101

Query: 301 VPLELAVNDML--KSKGAAAISDPDSFSQAMAKLRQRYDDLKERYAVSDVTVSLQNVASQ 474
           V +   V      +++   A  DP    + + + R+   +    + V   + S Q V ++
Sbjct: 102 VSVAEGVRRTAGERTRPVLAADDPVEHYRNLLETRRPLYEEVSTFRVRTNSRSPQQVVAE 161

Query: 475 L 477
           +
Sbjct: 162 I 162

>SUVH3_ARATH (Q9C5P4) Histone-lysine N-methyltransferase, H3 lysine-9 specific|
           SUVH3 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 3)
           (H3-K9-HMTase 3) (Suppressor of variegation 3-9 homolog
           protein 3) (Su(var)3-9 homolog protein 3) (Protein SET
           DOMAIN GR
          Length = 669

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 343 PCSSTCHSRLIQAGRRSRWRLHASAAPGW 257
           PC ++C +R+IQ G +SR  +  +   GW
Sbjct: 478 PCHASCKNRVIQTGLKSRLEVFKTRNRGW 506

>SDHD_BACCR (Q81F73) Probable D-serine dehydratase (EC 4.3.1.18) (D-serine|
           deaminase) (DSD)
          Length = 443

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
 Frame = +1

Query: 151 SDEKGYLEVETEGLKQLTSMGSLVLCCGDGAVMNSTNLGL--------LRHGVSIWIDVP 306
           ++E  Y  ++++  ++  S  S+       AV ++ NLGL        L   V++ +   
Sbjct: 139 TEEDNYSVLDSDTCREFFSKYSI-------AVGSTGNLGLSIGIMSANLGFNVTVHMSAD 191

Query: 307 LELAVNDMLKSKGAAAISDPDSFSQAMAKLRQRYDDLKERYAVSD 441
            +    D+L+SKG   I   D +S+A+ + R++ D     Y V D
Sbjct: 192 AKEWKKDLLRSKGVNVIEYEDDYSKAVEEGRRQADADPSCYFVDD 236

>EP15R_MOUSE (Q60902) Epidermal growth factor receptor substrate 15-like 1|
           (Eps15-related protein) (Eps15R) (Epidermal growth
           factor receptor pathway substrate 15-related sequence)
           (Eps15-rs)
          Length = 907

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = +1

Query: 367 DSFSQAMAKLRQRYDDLKERYAVSDVTVSLQNVASQLGYSSIDSLSLEDMVVEIVSRIEK 546
           D   Q  AKLR    D++++    D T ++ ++ +Q+     D  S ED +    S + +
Sbjct: 448 DEMDQQKAKLRDMLSDVRQK--CQDETQTISSLKTQIQSQESDLKSQEDDLNRAKSELNR 505

Query: 547 LIQAKAMME 573
           L Q +  +E
Sbjct: 506 LQQEETQLE 514

>BAR1_CHITE (P02849) Balbiani ring protein 1 (Giant secretory protein I-A)|
           (GSP-IA) (Fragment)
          Length = 174

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
 Frame = -3

Query: 496 SRCCCSLAEKPH--------SVVKQ*HQKLHSAPSDHHNADGALPLPEKRNQGLK*LPPP 341
           S+C C+ A KP         S  +       S P     + G+ P PEK ++G K  P  
Sbjct: 27  SKCRCTSAGKPSRNSEPSKGSKPRPEKPSKGSKPRPEKPSKGSKPKPEKPSKGSKPRPER 86

Query: 340 CSSTCHSRLIQAGRRSRWRLHAS 272
           C S       +   R   R +AS
Sbjct: 87  CGSAMRKAEAEKCARRNGRFNAS 109

>KTHY_NEIMA (Q9JVE7) Thymidylate kinase (EC 2.7.4.9) (dTMP kinase)|
          Length = 206

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
 Frame = +1

Query: 232 GDGAVMNSTNLGLLRHGV--------SIWIDVPLELAVN--DMLKSKGAAAISDPDSFSQ 381
           G G  M S ++ +L H V        ++ +DVPLE+++      + K        D F +
Sbjct: 105 GGGRGMPSEDIEILEHWVQGGLRPDLTLLLDVPLEVSMARIGQTREKDRFEQEQADFFMR 164

Query: 382 AMAKLRQRYDDLKERYAVSDVTVSLQNVASQL 477
             +    R     ERYAV D  + L  V + +
Sbjct: 165 VRSVYLNRAAACPERYAVIDSNLGLDEVRNSI 196


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,268,717
Number of Sequences: 219361
Number of extensions: 1415323
Number of successful extensions: 5024
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 4804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5018
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)