ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baalm18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467899.1| Oryza sativa (japonica cultivar-group), mRNA 60 7e-06
2gb|AY579411.1| Oryza sativa (japonica cultivar-group) RING/C3HC4... 60 7e-06
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
4dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
5dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
6dbj|AK067456.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
8dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
9dbj|AK108491.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
10ref|XM_654760.1| Aspergillus nidulans FGSC A4 4-aminobutyrate am... 44 0.40
11emb|X15647.1|ANGATA Aspergillus nidulans gatA gene for gamma-ami... 44 0.40
12gb|AY596790.1| Pseudomonas aeruginosa PhaC2-like gene, complete ... 42 1.6
13emb|X66592.1|PAPHAC1C2 Pseudomonas aeruginosa phaC1, phaC2 and p... 42 1.6
14gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.6
15gb|AE004919.1| Pseudomonas aeruginosa PAO1, section 480 of 529 o... 42 1.6
16ref|XM_472662.1| Oryza sativa (japonica cultivar-group), predic... 40 6.2
17gb|AY541066.1| Hordeum vulgare subsp. vulgare PISTILLATA-like pr... 40 6.2
18ref|XM_449913.1| Candida glabrata CBS138 hypothetical protein (C... 40 6.2
19emb|CR380959.1| Candida glabrata strain CBS138 chromosome M comp... 40 6.2
20emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4,... 40 6.2
21emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 40 6.2
22gb|AE012099.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 6.2
23gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 6.2
24dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
25dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
26gb|DQ058601.1| Thermus thermophilus plasmid pTF62, complete sequ... 40 6.2
27gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 6.2
28dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.2
29emb|BX000346.3|CNS08CDC Oryza sativa chromosome 12, . BAC OSJNBb... 40 6.2
30gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
31emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B1280F... 40 6.2
32emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa... 40 6.2 
>ref|XM_467899.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1735

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 55/61 (90%), Gaps = 2/61 (3%)
 Strand = Plus / Plus

                                                                        
Query: 5    cacgctgcggctgccggaancacgtgcgcagggcagatggtcgcggccggggagcagagc 64
            ||||||||||||||||||  ||||| | ||||| ||||||||||||| ||||||||||||
Sbjct: 957  cacgctgcggctgccgga-gcacgtacacaggg-agatggtcgcggcgggggagcagagc 1014

             
Query: 65   g 65
            |
Sbjct: 1015 g 1015



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 211  agggaagcgcgtggccgccgt 231
            |||||||||||||||||||||
Sbjct: 1221 agggaagcgcgtggccgccgt 1241
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>gb|AY579411.1| Oryza sativa (japonica cultivar-group) RING/C3HC4/PHD zinc
            finger-like protein mRNA, complete cds
          Length = 1670

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 55/61 (90%), Gaps = 2/61 (3%)
 Strand = Plus / Plus

                                                                        
Query: 5    cacgctgcggctgccggaancacgtgcgcagggcagatggtcgcggccggggagcagagc 64
            ||||||||||||||||||  ||||| | ||||| ||||||||||||| ||||||||||||
Sbjct: 944  cacgctgcggctgccgga-gcacgtacacaggg-agatggtcgcggcgggggagcagagc 1001

             
Query: 65   g 65
            |
Sbjct: 1002 g 1002



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 211  agggaagcgcgtggccgccgt 231
            |||||||||||||||||||||
Sbjct: 1208 agggaagcgcgtggccgccgt 1228
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 55/61 (90%), Gaps = 2/61 (3%)
 Strand = Plus / Plus

                                                                            
Query: 5        cacgctgcggctgccggaancacgtgcgcagggcagatggtcgcggccggggagcagagc 64
                ||||||||||||||||||  ||||| | ||||| ||||||||||||| ||||||||||||
Sbjct: 31987254 cacgctgcggctgccgga-gcacgtacacaggg-agatggtcgcggcgggggagcagagc 31987311

                 
Query: 65       g 65
                |
Sbjct: 31987312 g 31987312



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 211      agggaagcgcgtggccgccgt 231
                |||||||||||||||||||||
Sbjct: 31987518 agggaagcgcgtggccgccgt 31987538
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>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0471A11
          Length = 157740

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 55/61 (90%), Gaps = 2/61 (3%)
 Strand = Plus / Plus

                                                                          
Query: 5      cacgctgcggctgccggaancacgtgcgcagggcagatggtcgcggccggggagcagagc 64
              ||||||||||||||||||  ||||| | ||||| ||||||||||||| ||||||||||||
Sbjct: 148255 cacgctgcggctgccgga-gcacgtacacaggg-agatggtcgcggcgggggagcagagc 148312

               
Query: 65     g 65
              |
Sbjct: 148313 g 148313



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 211    agggaagcgcgtggccgccgt 231
              |||||||||||||||||||||
Sbjct: 148519 agggaagcgcgtggccgccgt 148539
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>dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1175_B01
          Length = 96191

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 55/61 (90%), Gaps = 2/61 (3%)
 Strand = Plus / Plus

                                                                        
Query: 5    cacgctgcggctgccggaancacgtgcgcagggcagatggtcgcggccggggagcagagc 64
            ||||||||||||||||||  ||||| | ||||| ||||||||||||| ||||||||||||
Sbjct: 7629 cacgctgcggctgccgga-gcacgtacacaggg-agatggtcgcggcgggggagcagagc 7686

             
Query: 65   g 65
            |
Sbjct: 7687 g 7687



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 211  agggaagcgcgtggccgccgt 231
            |||||||||||||||||||||
Sbjct: 7893 agggaagcgcgtggccgccgt 7913
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>dbj|AK067456.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107I10, full
            insert sequence
          Length = 1735

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 55/61 (90%), Gaps = 2/61 (3%)
 Strand = Plus / Plus

                                                                        
Query: 5    cacgctgcggctgccggaancacgtgcgcagggcagatggtcgcggccggggagcagagc 64
            ||||||||||||||||||  ||||| | ||||| ||||||||||||| ||||||||||||
Sbjct: 957  cacgctgcggctgccgga-gcacgtacacaggg-agatggtcgcggcgggggagcagagc 1014

             
Query: 65   g 65
            |
Sbjct: 1015 g 1015



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 211  agggaagcgcgtggccgccgt 231
            |||||||||||||||||||||
Sbjct: 1221 agggaagcgcgtggccgccgt 1241
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 48/53 (90%), Gaps = 2/53 (3%)
 Strand = Plus / Minus

                                                                    
Query: 1       ggttcacgctgcggctgccggaancacgtgcgcagggcagatggtcgcggccg 53
               ||||||||||||| ||||||| | ||||||||||||| |||||||||| ||||
Sbjct: 6070455 ggttcacgctgcgcctgccgg-agcacgtgcgcaggg-agatggtcgccgccg 6070405
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>dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0644A02
          Length = 144954

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 48/53 (90%), Gaps = 2/53 (3%)
 Strand = Plus / Minus

                                                                  
Query: 1     ggttcacgctgcggctgccggaancacgtgcgcagggcagatggtcgcggccg 53
             ||||||||||||| ||||||| | ||||||||||||| |||||||||| ||||
Sbjct: 74954 ggttcacgctgcgcctgccgg-agcacgtgcgcaggg-agatggtcgccgccg 74904
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>dbj|AK108491.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-G02, full
           insert sequence
          Length = 1700

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 48/53 (90%), Gaps = 2/53 (3%)
 Strand = Plus / Plus

                                                                
Query: 1   ggttcacgctgcggctgccggaancacgtgcgcagggcagatggtcgcggccg 53
           ||||||||||||| ||||||| | ||||||||||||| |||||||||| ||||
Sbjct: 903 ggttcacgctgcgcctgccgg-agcacgtgcgcaggg-agatggtcgccgccg 953
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>ref|XM_654760.1| Aspergillus nidulans FGSC A4 4-aminobutyrate aminotransferase
           (AN2248.2), mRNA
          Length = 1497

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 184 gtcctcttcatcgtcgacgagg 205
           ||||||||||||||||||||||
Sbjct: 958 gtcctcttcatcgtcgacgagg 979
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>emb|X15647.1|ANGATA Aspergillus nidulans gatA gene for gamma-amino-n-butyrate
            transaminase
          Length = 2612

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 184  gtcctcttcatcgtcgacgagg 205
            ||||||||||||||||||||||
Sbjct: 1535 gtcctcttcatcgtcgacgagg 1556
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>gb|AY596790.1| Pseudomonas aeruginosa PhaC2-like gene, complete sequence
          Length = 1684

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   ggttcacgctgcggctgccgg 21
           |||||||||||||||||||||
Sbjct: 875 ggttcacgctgcggctgccgg 855
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>emb|X66592.1|PAPHAC1C2 Pseudomonas aeruginosa phaC1, phaC2 and phaD genes
          Length = 7311

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1    ggttcacgctgcggctgccgg 21
            |||||||||||||||||||||
Sbjct: 5132 ggttcacgctgcggctgccgg 5112
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 269     gtcggctctgtggcggtcgatgtggacaaggac 301
               ||||||| ||||| |||||||||||| ||||||
Sbjct: 2854607 gtcggctatgtggtggtcgatgtggaaaaggac 2854575
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>gb|AE004919.1| Pseudomonas aeruginosa PAO1, section 480 of 529 of the complete
            genome
          Length = 11267

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1    ggttcacgctgcggctgccgg 21
            |||||||||||||||||||||
Sbjct: 4734 ggttcacgctgcggctgccgg 4714
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>ref|XM_472662.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1164

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   ggttcacgctgcggctgccg 20
           ||||||||||||||||||||
Sbjct: 830 ggttcacgctgcggctgccg 849
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>gb|AY541066.1| Hordeum vulgare subsp. vulgare PISTILLATA-like protein mRNA,
           complete cds
          Length = 965

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 171 agggaggagaggtgtcctct 190
           ||||||||||||||||||||
Sbjct: 23  agggaggagaggtgtcctct 42
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>ref|XM_449913.1| Candida glabrata CBS138 hypothetical protein (CAGL0M13101g) partial
           mRNA
          Length = 1026

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 80  cagagagccggcagatggcc 99
           ||||||||||||||||||||
Sbjct: 250 cagagagccggcagatggcc 269
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>emb|CR380959.1| Candida glabrata strain CBS138 chromosome M complete sequence
          Length = 1400893

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 80      cagagagccggcagatggcc 99
               ||||||||||||||||||||
Sbjct: 1286810 cagagagccggcagatggcc 1286829
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>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14,
             complete sequence
          Length = 175698

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     ggttcacgctgcggctgccg 20
             ||||||||||||||||||||
Sbjct: 14751 ggttcacgctgcggctgccg 14770
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    tcctcttcatcgtcgacgag 204
              ||||||||||||||||||||
Sbjct: 951823 tcctcttcatcgtcgacgag 951842
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>gb|AE012099.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 7
           of 460 of the complete genome
          Length = 10647

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 catttcgtcgaacgcggcgg 252
           ||||||||||||||||||||
Sbjct: 504 catttcgtcgaacgcggcgg 485
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   catttcgtcgaacgcggcgg 252
             ||||||||||||||||||||
Sbjct: 65351 catttcgtcgaacgcggcgg 65332
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 1        ggttcacgctgcggctgccg 20
                ||||||||||||||||||||
Sbjct: 22410996 ggttcacgctgcggctgccg 22411015
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 1       ggttcacgctgcggctgccg 20
               ||||||||||||||||||||
Sbjct: 5538925 ggttcacgctgcggctgccg 5538944
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>gb|DQ058601.1| Thermus thermophilus plasmid pTF62, complete sequence
          Length = 10402

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 159  cggagagctccgagggagga 178
            ||||||||||||||||||||
Sbjct: 4423 cggagagctccgagggagga 4442
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 181     ggtgtcctcttcatcgtcga 200
               ||||||||||||||||||||
Sbjct: 2110201 ggtgtcctcttcatcgtcga 2110182
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 224     gccgccgtgcatttcgtcga 243
               ||||||||||||||||||||
Sbjct: 5052997 gccgccgtgcatttcgtcga 5053016



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 40      gatggtcgcggccggggagc 59
               ||||||||||||||||||||
Sbjct: 2920435 gatggtcgcggccggggagc 2920454
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>emb|BX000346.3|CNS08CDC Oryza sativa chromosome 12, . BAC OSJNBb0084C05 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 117585

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     ggttcacgctgcggctgccg 20
             ||||||||||||||||||||
Sbjct: 59214 ggttcacgctgcggctgccg 59195
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 1       ggttcacgctgcggctgccg 20
               ||||||||||||||||||||
Sbjct: 5538914 ggttcacgctgcggctgccg 5538933
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>emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B1280F04 of chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 160556

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     ggttcacgctgcggctgccg 20
             ||||||||||||||||||||
Sbjct: 91730 ggttcacgctgcggctgccg 91749
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>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 139684

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      ggttcacgctgcggctgccg 20
              ||||||||||||||||||||
Sbjct: 113960 ggttcacgctgcggctgccg 113941


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,520,930
Number of Sequences: 3902068
Number of extensions: 2520930
Number of successful extensions: 48375
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 47832
Number of HSP's gapped (non-prelim): 540
length of query: 459
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 437
effective length of database: 17,147,199,772
effective search space: 7493326300364
effective search space used: 7493326300364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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