ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baalm17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467899.1| Oryza sativa (japonica cultivar-group), mRNA 100 8e-18
2gb|AY579411.1| Oryza sativa (japonica cultivar-group) RING/C3HC4... 100 8e-18
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 100 8e-18
4dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic D... 100 8e-18
5dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic D... 100 8e-18
6dbj|AK067456.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 8e-18
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
8dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
9dbj|AK108491.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
10ref|XM_472662.1| Oryza sativa (japonica cultivar-group), predic... 60 7e-06
11emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4,... 60 7e-06
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
13dbj|AP005114.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
14ref|XM_450948.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.002
15dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
16dbj|AP005399.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
17ref|XM_654760.1| Aspergillus nidulans FGSC A4 4-aminobutyrate am... 44 0.43
18emb|X15647.1|ANGATA Aspergillus nidulans gatA gene for gamma-ami... 44 0.43
19dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.43
20emb|BX000346.3|CNS08CDC Oryza sativa chromosome 12, . BAC OSJNBb... 44 0.43
21gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.43
22emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B1280F... 44 0.43
23emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa... 44 0.43
24gb|AY596790.1| Pseudomonas aeruginosa PhaC2-like gene, complete ... 42 1.7
25emb|X66592.1|PAPHAC1C2 Pseudomonas aeruginosa phaC1, phaC2 and p... 42 1.7
26gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.7
27gb|AE004919.1| Pseudomonas aeruginosa PAO1, section 480 of 529 o... 42 1.7
28ref|XM_470813.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.7
29gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.7
30gb|AY541066.1| Hordeum vulgare subsp. vulgare PISTILLATA-like pr... 40 6.7
31gb|AC099323.6| Oryza sativa chromosome 3 BAC OSJNBa0065F09 genom... 40 6.7
32ref|XM_449913.1| Candida glabrata CBS138 hypothetical protein (C... 40 6.7
33gb|AY163770.1| Homo sapiens general transcription factor IIH, po... 40 6.7
34emb|CR380959.1| Candida glabrata strain CBS138 chromosome M comp... 40 6.7
35emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 40 6.7
36gb|AC084117.6| Homo sapiens chromosome 11, clone RP11-107C21, co... 40 6.7
37gb|AE012099.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 6.7
38gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 6.7
39dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
40gb|DQ058601.1| Thermus thermophilus plasmid pTF62, complete sequ... 40 6.7
41gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 6.7
42dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.7 
>ref|XM_467899.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1735

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 82/90 (91%), Gaps = 2/90 (2%)
 Strand = Plus / Plus

                                                                        
Query: 15   gtccggctcgaccgcgacctggnagcggttcacgctgcggctgccggagcacgtgcgcag 74
            |||||||||||| ||||||| | |||||| |||||||||||||||||||||||| | |||
Sbjct: 928  gtccggctcgacggcgacctag-agcggtacacgctgcggctgccggagcacgtacacag 986

                                          
Query: 75   ggnagatggtcgcggccggggagcagagcg 104
            || ||||||||||||| |||||||||||||
Sbjct: 987  gg-agatggtcgcggcgggggagcagagcg 1015



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 250  agggaagcgcgtggccgccgt 270
            |||||||||||||||||||||
Sbjct: 1221 agggaagcgcgtggccgccgt 1241
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>gb|AY579411.1| Oryza sativa (japonica cultivar-group) RING/C3HC4/PHD zinc
            finger-like protein mRNA, complete cds
          Length = 1670

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 82/90 (91%), Gaps = 2/90 (2%)
 Strand = Plus / Plus

                                                                        
Query: 15   gtccggctcgaccgcgacctggnagcggttcacgctgcggctgccggagcacgtgcgcag 74
            |||||||||||| ||||||| | |||||| |||||||||||||||||||||||| | |||
Sbjct: 915  gtccggctcgacggcgacctag-agcggtacacgctgcggctgccggagcacgtacacag 973

                                          
Query: 75   ggnagatggtcgcggccggggagcagagcg 104
            || ||||||||||||| |||||||||||||
Sbjct: 974  gg-agatggtcgcggcgggggagcagagcg 1002



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 250  agggaagcgcgtggccgccgt 270
            |||||||||||||||||||||
Sbjct: 1208 agggaagcgcgtggccgccgt 1228
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 82/90 (91%), Gaps = 2/90 (2%)
 Strand = Plus / Plus

                                                                            
Query: 15       gtccggctcgaccgcgacctggnagcggttcacgctgcggctgccggagcacgtgcgcag 74
                |||||||||||| ||||||| | |||||| |||||||||||||||||||||||| | |||
Sbjct: 31987225 gtccggctcgacggcgacctag-agcggtacacgctgcggctgccggagcacgtacacag 31987283

                                              
Query: 75       ggnagatggtcgcggccggggagcagagcg 104
                || ||||||||||||| |||||||||||||
Sbjct: 31987284 gg-agatggtcgcggcgggggagcagagcg 31987312



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                               
Query: 38       agcggttcacgctgcggctgccggagcacgt 68
                |||||||| ||||||||||||||||||||||
Sbjct: 21942599 agcggttcgcgctgcggctgccggagcacgt 21942569



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 250      agggaagcgcgtggccgccgt 270
                |||||||||||||||||||||
Sbjct: 31987518 agggaagcgcgtggccgccgt 31987538
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>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0471A11
          Length = 157740

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 82/90 (91%), Gaps = 2/90 (2%)
 Strand = Plus / Plus

                                                                          
Query: 15     gtccggctcgaccgcgacctggnagcggttcacgctgcggctgccggagcacgtgcgcag 74
              |||||||||||| ||||||| | |||||| |||||||||||||||||||||||| | |||
Sbjct: 148226 gtccggctcgacggcgacctag-agcggtacacgctgcggctgccggagcacgtacacag 148284

                                            
Query: 75     ggnagatggtcgcggccggggagcagagcg 104
              || ||||||||||||| |||||||||||||
Sbjct: 148285 gg-agatggtcgcggcgggggagcagagcg 148313



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 250    agggaagcgcgtggccgccgt 270
              |||||||||||||||||||||
Sbjct: 148519 agggaagcgcgtggccgccgt 148539
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>dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1175_B01
          Length = 96191

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 82/90 (91%), Gaps = 2/90 (2%)
 Strand = Plus / Plus

                                                                        
Query: 15   gtccggctcgaccgcgacctggnagcggttcacgctgcggctgccggagcacgtgcgcag 74
            |||||||||||| ||||||| | |||||| |||||||||||||||||||||||| | |||
Sbjct: 7600 gtccggctcgacggcgacctag-agcggtacacgctgcggctgccggagcacgtacacag 7658

                                          
Query: 75   ggnagatggtcgcggccggggagcagagcg 104
            || ||||||||||||| |||||||||||||
Sbjct: 7659 gg-agatggtcgcggcgggggagcagagcg 7687



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 250  agggaagcgcgtggccgccgt 270
            |||||||||||||||||||||
Sbjct: 7893 agggaagcgcgtggccgccgt 7913
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>dbj|AK067456.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107I10, full
            insert sequence
          Length = 1735

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 82/90 (91%), Gaps = 2/90 (2%)
 Strand = Plus / Plus

                                                                        
Query: 15   gtccggctcgaccgcgacctggnagcggttcacgctgcggctgccggagcacgtgcgcag 74
            |||||||||||| ||||||| | |||||| |||||||||||||||||||||||| | |||
Sbjct: 928  gtccggctcgacggcgacctag-agcggtacacgctgcggctgccggagcacgtacacag 986

                                          
Query: 75   ggnagatggtcgcggccggggagcagagcg 104
            || ||||||||||||| |||||||||||||
Sbjct: 987  gg-agatggtcgcggcgggggagcagagcg 1015



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 250  agggaagcgcgtggccgccgt 270
            |||||||||||||||||||||
Sbjct: 1221 agggaagcgcgtggccgccgt 1241
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 52/55 (94%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                      
Query: 38      agcggttcacgctgcggctgccggagcacgtgcgcagggnagatggtcgcggccg 92
               |||||||||||||||| |||||||||||||||||||||| |||||||||| ||||
Sbjct: 6070458 agcggttcacgctgcgcctgccggagcacgtgcgcaggg-agatggtcgccgccg 6070405
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>dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0644A02
          Length = 144954

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 52/55 (94%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                    
Query: 38    agcggttcacgctgcggctgccggagcacgtgcgcagggnagatggtcgcggccg 92
             |||||||||||||||| |||||||||||||||||||||| |||||||||| ||||
Sbjct: 74957 agcggttcacgctgcgcctgccggagcacgtgcgcaggg-agatggtcgccgccg 74904
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>dbj|AK108491.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-G02, full
           insert sequence
          Length = 1700

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 52/55 (94%), Gaps = 1/55 (1%)
 Strand = Plus / Plus

                                                                  
Query: 38  agcggttcacgctgcggctgccggagcacgtgcgcagggnagatggtcgcggccg 92
           |||||||||||||||| |||||||||||||||||||||| |||||||||| ||||
Sbjct: 900 agcggttcacgctgcgcctgccggagcacgtgcgcaggg-agatggtcgccgccg 953
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>ref|XM_472662.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1164

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 38  agcggttcacgctgcggctgccggagcacgtgcg 71
           ||||||||||||||||||||||| ||||||||||
Sbjct: 827 agcggttcacgctgcggctgccgcagcacgtgcg 860
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>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14,
             complete sequence
          Length = 175698

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                               
Query: 38    agcggttcacgctgcggctgccggagcacgtgcg 71
             ||||||||||||||||||||||| ||||||||||
Sbjct: 14748 agcggttcacgctgcggctgccgcagcacgtgcg 14781
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                                  
Query: 38       agcggttcacgctgcggctgccggagcacgtgcg 71
                ||||||||||||||||||||||| ||||||||||
Sbjct: 22410993 agcggttcacgctgcggctgccgcagcacgtgcg 22411026
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>dbj|AP005114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0689H05
          Length = 135803

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                             
Query: 38     agcggttcacgctgcggctgccggagcacgt 68
              |||||||| ||||||||||||||||||||||
Sbjct: 125884 agcggttcgcgctgcggctgccggagcacgt 125854
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>ref|XM_450948.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1179

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 41  ggttcacgctgcggctgccggagcacgtgc 70
           ||||||||||||||||||| ||||||||||
Sbjct: 842 ggttcacgctgcggctgcccgagcacgtgc 871
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                              
Query: 41       ggttcacgctgcggctgccggagcacgtgc 70
                ||||||||||||||||||| ||||||||||
Sbjct: 17736495 ggttcacgctgcggctgcccgagcacgtgc 17736466
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>dbj|AP005399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0676H02
          Length = 144252

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                           
Query: 41    ggttcacgctgcggctgccggagcacgtgc 70
             ||||||||||||||||||| ||||||||||
Sbjct: 45129 ggttcacgctgcggctgcccgagcacgtgc 45100
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>ref|XM_654760.1| Aspergillus nidulans FGSC A4 4-aminobutyrate aminotransferase
           (AN2248.2), mRNA
          Length = 1497

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 223 gtcctcttcatcgtcgacgagg 244
           ||||||||||||||||||||||
Sbjct: 958 gtcctcttcatcgtcgacgagg 979
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>emb|X15647.1|ANGATA Aspergillus nidulans gatA gene for gamma-amino-n-butyrate
            transaminase
          Length = 2612

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 223  gtcctcttcatcgtcgacgagg 244
            ||||||||||||||||||||||
Sbjct: 1535 gtcctcttcatcgtcgacgagg 1556
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 40      cggttcacgctgcggctgccggagcacgtgcgca 73
               ||||||||||||||||||||| | ||||| ||||
Sbjct: 5538924 cggttcacgctgcggctgccgcaacacgtacgca 5538957
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>emb|BX000346.3|CNS08CDC Oryza sativa chromosome 12, . BAC OSJNBb0084C05 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 117585

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 40    cggttcacgctgcggctgccggagcacgtgcgca 73
             ||||||||||||||||||||| | ||||| ||||
Sbjct: 59215 cggttcacgctgcggctgccgcaacacgtacgca 59182
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 40      cggttcacgctgcggctgccggagcacgtgcgca 73
               ||||||||||||||||||||| | ||||| ||||
Sbjct: 5538913 cggttcacgctgcggctgccgcaacacgtacgca 5538946
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>emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B1280F04 of chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 160556

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 40    cggttcacgctgcggctgccggagcacgtgcgca 73
             ||||||||||||||||||||| | ||||| ||||
Sbjct: 91729 cggttcacgctgcggctgccgcaacacgtacgca 91762
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>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 139684

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 40     cggttcacgctgcggctgccggagcacgtgcgca 73
              ||||||||||||||||||||| | ||||| ||||
Sbjct: 113961 cggttcacgctgcggctgccgcaacacgtacgca 113928
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>gb|AY596790.1| Pseudomonas aeruginosa PhaC2-like gene, complete sequence
          Length = 1684

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 41  ggttcacgctgcggctgccgg 61
           |||||||||||||||||||||
Sbjct: 875 ggttcacgctgcggctgccgg 855
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>emb|X66592.1|PAPHAC1C2 Pseudomonas aeruginosa phaC1, phaC2 and phaD genes
          Length = 7311

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 41   ggttcacgctgcggctgccgg 61
            |||||||||||||||||||||
Sbjct: 5132 ggttcacgctgcggctgccgg 5112
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 308     gtcggctctgtggcggtcgatgtggacaaggac 340
               ||||||| ||||| |||||||||||| ||||||
Sbjct: 2854607 gtcggctatgtggtggtcgatgtggaaaaggac 2854575
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>gb|AE004919.1| Pseudomonas aeruginosa PAO1, section 480 of 529 of the complete
            genome
          Length = 11267

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 41   ggttcacgctgcggctgccgg 61
            |||||||||||||||||||||
Sbjct: 4734 ggttcacgctgcggctgccgg 4714
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>ref|XM_470813.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1254

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 40  cggttcacgctgcggctgccggag 63
           |||| |||||||||||||||||||
Sbjct: 769 cggtacacgctgcggctgccggag 792
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 40       cggttcacgctgcggctgccggag 63
                |||| |||||||||||||||||||
Sbjct: 15507177 cggtacacgctgcggctgccggag 15507200
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>gb|AY541066.1| Hordeum vulgare subsp. vulgare PISTILLATA-like protein mRNA,
           complete cds
          Length = 965

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 210 agggaggagaggtgtcctct 229
           ||||||||||||||||||||
Sbjct: 23  agggaggagaggtgtcctct 42
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>gb|AC099323.6| Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence,
            complete sequence
          Length = 115079

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 40   cggttcacgctgcggctgccggag 63
            |||| |||||||||||||||||||
Sbjct: 6728 cggtacacgctgcggctgccggag 6751
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>ref|XM_449913.1| Candida glabrata CBS138 hypothetical protein (CAGL0M13101g) partial
           mRNA
          Length = 1026

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 cagagagccggcagatggcc 138
           ||||||||||||||||||||
Sbjct: 250 cagagagccggcagatggcc 269
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>gb|AY163770.1| Homo sapiens general transcription factor IIH, polypeptide 1, 62kDa
             (GTF2H1) gene, complete cds
          Length = 45874

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 425   gagtctgtctgtactattaactca 448
             |||||||||||||||| |||||||
Sbjct: 18324 gagtctgtctgtactactaactca 18347
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>emb|CR380959.1| Candida glabrata strain CBS138 chromosome M complete sequence
          Length = 1400893

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 119     cagagagccggcagatggcc 138
               ||||||||||||||||||||
Sbjct: 1286810 cagagagccggcagatggcc 1286829
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    tcctcttcatcgtcgacgag 243
              ||||||||||||||||||||
Sbjct: 951823 tcctcttcatcgtcgacgag 951842
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>gb|AC084117.6| Homo sapiens chromosome 11, clone RP11-107C21, complete sequence
          Length = 166973

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 425   gagtctgtctgtactattaactca 448
             |||||||||||||||| |||||||
Sbjct: 48234 gagtctgtctgtactactaactca 48257
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>gb|AE012099.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 7
           of 460 of the complete genome
          Length = 10647

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 272 catttcgtcgaacgcggcgg 291
           ||||||||||||||||||||
Sbjct: 504 catttcgtcgaacgcggcgg 485
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   catttcgtcgaacgcggcgg 291
             ||||||||||||||||||||
Sbjct: 65351 catttcgtcgaacgcggcgg 65332
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 40       cggttcacgctgcggctgccggag 63
                |||| |||||||||||||||||||
Sbjct: 15501711 cggtacacgctgcggctgccggag 15501734
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>gb|DQ058601.1| Thermus thermophilus plasmid pTF62, complete sequence
          Length = 10402

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 198  cggagagctccgagggagga 217
            ||||||||||||||||||||
Sbjct: 4423 cggagagctccgagggagga 4442
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 220     ggtgtcctcttcatcgtcga 239
               ||||||||||||||||||||
Sbjct: 2110201 ggtgtcctcttcatcgtcga 2110182
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 263     gccgccgtgcatttcgtcga 282
               ||||||||||||||||||||
Sbjct: 5052997 gccgccgtgcatttcgtcga 5053016



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 79      gatggtcgcggccggggagc 98
               ||||||||||||||||||||
Sbjct: 2920435 gatggtcgcggccggggagc 2920454


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,746,722
Number of Sequences: 3902068
Number of extensions: 2746722
Number of successful extensions: 52795
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52041
Number of HSP's gapped (non-prelim): 742
length of query: 498
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 476
effective length of database: 17,147,199,772
effective search space: 8162067091472
effective search space used: 8162067091472
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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