Clone Name | baalm16 |
---|---|
Clone Library Name | barley_pub |
>gb|AF067732.1|AF067732 Hordeum vulgare ribosomal protein S12 (rps12) mRNA, complete cds Length = 760 Score = 563 bits (284), Expect = e-157 Identities = 293/295 (99%), Gaps = 1/295 (0%) Strand = Plus / Plus Query: 1 agtgctcatggatggccttgtgaaggggctccgtgaggctgccaagtccattgagaagca 60 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 210 agtgctcatg-atggccttgtgaaggggctccgtgaggctgccaagtccattgagaagca 268 Query: 61 tgctgctcagctttgtgtgctggctgaggattgtgaccagcctgattacgtgaagcttgt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 269 tgctgctcagctttgtgtgctggctgaggattgtgaccagcctgattacgtgaagcttgt 328 Query: 121 taaggcactatgcgctgagcacaatgttcacctggttactgtgccaagtgctaaaactct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 329 taaggcactatgcgctgagcacaatgttcacctggttactgtgccaagtgctaaaactct 388 Query: 181 cggagagtgggcagggctttgcaagatcgacactgagggcaaggcaaggaaggttgtang 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 389 cggagagtgggcagggctttgcaagatcgacactgagggcaaggcaaggaaggttgtagg 448 Query: 241 ctgctcttgcattgttgtcaaggactatggtgaagaatccgagggccttaacatc 295 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 449 ctgctcttgcattgttgtcaaggactatggtgaagaatccgagggccttaacatc 503
>ref|XM_476648.1| Oryza sativa (japonica cultivar-group), mRNA Length = 730 Score = 323 bits (163), Expect = 2e-85 Identities = 262/294 (89%), Gaps = 1/294 (0%) Strand = Plus / Plus Query: 1 agtgctcatggatggccttgtgaaggggctccgtgaggctgccaagtccattgagaagca 60 |||||||||| |||| ||||||||||| |||||||||||||||||| |||| |||||||| Sbjct: 193 agtgctcatg-atgggcttgtgaagggtctccgtgaggctgccaaggccatcgagaagca 251 Query: 61 tgctgctcagctttgtgtgctggctgaggattgtgaccagcctgattacgtgaagcttgt 120 ||||||||||||||||||||| |||||||| || ||||| |||||||| || ||| | || Sbjct: 252 tgctgctcagctttgtgtgcttgctgaggactgcgaccaacctgattatgtcaagttggt 311 Query: 121 taaggcactatgcgctgagcacaatgttcacctggttactgtgccaagtgctaaaactct 180 |||||| || || ||||||||||| |||||||| ||||| ||||| |||||||| ||||| Sbjct: 312 taaggctctgtgtgctgagcacaacgttcaccttgttaccgtgcctagtgctaagactct 371 Query: 181 cggagagtgggcagggctttgcaagatcgacactgagggcaaggcaaggaaggttgtang 240 || ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | Sbjct: 372 tggcgagtgggcagggctttgcaagattgactctgagggcaaggcaaggaaggttgtggg 431 Query: 241 ctgctcttgcattgttgtcaaggactatggtgaagaatccgagggccttaacat 294 |||||| ||| | ||||||||||||||||||||||| || |||||||||||||| Sbjct: 432 ctgctcctgcgtcgttgtcaaggactatggtgaagagtctgagggccttaacat 485
>dbj|AK121635.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051C16, full insert sequence Length = 734 Score = 323 bits (163), Expect = 2e-85 Identities = 262/294 (89%), Gaps = 1/294 (0%) Strand = Plus / Plus Query: 1 agtgctcatggatggccttgtgaaggggctccgtgaggctgccaagtccattgagaagca 60 |||||||||| |||| ||||||||||| |||||||||||||||||| |||| |||||||| Sbjct: 197 agtgctcatg-atgggcttgtgaagggtctccgtgaggctgccaaggccatcgagaagca 255 Query: 61 tgctgctcagctttgtgtgctggctgaggattgtgaccagcctgattacgtgaagcttgt 120 ||||||||||||||||||||| |||||||| || ||||| |||||||| || ||| | || Sbjct: 256 tgctgctcagctttgtgtgcttgctgaggactgcgaccaacctgattatgtcaagttggt 315 Query: 121 taaggcactatgcgctgagcacaatgttcacctggttactgtgccaagtgctaaaactct 180 |||||| || || ||||||||||| |||||||| ||||| ||||| |||||||| ||||| Sbjct: 316 taaggctctgtgtgctgagcacaacgttcaccttgttaccgtgcctagtgctaagactct 375 Query: 181 cggagagtgggcagggctttgcaagatcgacactgagggcaaggcaaggaaggttgtang 240 || ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | Sbjct: 376 tggcgagtgggcagggctttgcaagattgactctgagggcaaggcaaggaaggttgtggg 435 Query: 241 ctgctcttgcattgttgtcaaggactatggtgaagaatccgagggccttaacat 294 |||||| ||| | ||||||||||||||||||||||| || |||||||||||||| Sbjct: 436 ctgctcctgcgtcgttgtcaaggactatggtgaagagtctgagggccttaacat 489
>dbj|AK058680.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-A01, full insert sequence Length = 730 Score = 323 bits (163), Expect = 2e-85 Identities = 262/294 (89%), Gaps = 1/294 (0%) Strand = Plus / Plus Query: 1 agtgctcatggatggccttgtgaaggggctccgtgaggctgccaagtccattgagaagca 60 |||||||||| |||| ||||||||||| |||||||||||||||||| |||| |||||||| Sbjct: 193 agtgctcatg-atgggcttgtgaagggtctccgtgaggctgccaaggccatcgagaagca 251 Query: 61 tgctgctcagctttgtgtgctggctgaggattgtgaccagcctgattacgtgaagcttgt 120 ||||||||||||||||||||| |||||||| || ||||| |||||||| || ||| | || Sbjct: 252 tgctgctcagctttgtgtgcttgctgaggactgcgaccaacctgattatgtcaagttggt 311 Query: 121 taaggcactatgcgctgagcacaatgttcacctggttactgtgccaagtgctaaaactct 180 |||||| || || ||||||||||| |||||||| ||||| ||||| |||||||| ||||| Sbjct: 312 taaggctctgtgtgctgagcacaacgttcaccttgttaccgtgcctagtgctaagactct 371 Query: 181 cggagagtgggcagggctttgcaagatcgacactgagggcaaggcaaggaaggttgtang 240 || ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | Sbjct: 372 tggcgagtgggcagggctttgcaagattgactctgagggcaaggcaaggaaggttgtggg 431 Query: 241 ctgctcttgcattgttgtcaaggactatggtgaagaatccgagggccttaacat 294 |||||| ||| | ||||||||||||||||||||||| || |||||||||||||| Sbjct: 432 ctgctcctgcgtcgttgtcaaggactatggtgaagagtctgagggccttaacat 485
>ref|XM_477173.1| Oryza sativa (japonica cultivar-group), mRNA Length = 751 Score = 303 bits (153), Expect = 2e-79 Identities = 251/284 (88%) Strand = Plus / Plus Query: 11 gatggccttgtgaaggggctccgtgaggctgccaagtccattgagaagcatgctgctcag 70 ||||| || |||||||||||||||||||| |||||| |||||||||||||||| |||||| Sbjct: 225 gatgggctcgtgaaggggctccgtgaggcggccaaggccattgagaagcatgccgctcag 284 Query: 71 ctttgtgtgctggctgaggattgtgaccagcctgattacgtgaagcttgttaaggcacta 130 ||||| ||||| |||||||| ||||||||||||||||| || ||| | || |||||||| Sbjct: 285 ctttgcgtgcttgctgaggactgtgaccagcctgattatgtcaagttggtcaaggcactc 344 Query: 131 tgcgctgagcacaatgttcacctggttactgtgccaagtgctaaaactctcggagagtgg 190 ||||||||||||||||||||||| ||||| ||||| |||||||||||||| || |||||| Sbjct: 345 tgcgctgagcacaatgttcacctcgttaccgtgcctagtgctaaaactcttggcgagtgg 404 Query: 191 gcagggctttgcaagatcgacactgagggcaaggcaaggaaggttgtangctgctcttgc 250 ||||||||||||||||| || ||||||||||||| |||||||| ||| ||||||| ||| Sbjct: 405 gcagggctttgcaagattgattctgagggcaaggcgaggaaggtcgtaggctgctcctgc 464 Query: 251 attgttgtcaaggactatggtgaagaatccgagggccttaacat 294 | ||||||||||||| |||||||| || |||||||| ||||| Sbjct: 465 gtcgttgtcaaggacttcggtgaagagtcagagggcctcaacat 508
>dbj|AK121720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033080B09, full insert sequence Length = 754 Score = 303 bits (153), Expect = 2e-79 Identities = 251/284 (88%) Strand = Plus / Plus Query: 11 gatggccttgtgaaggggctccgtgaggctgccaagtccattgagaagcatgctgctcag 70 ||||| || |||||||||||||||||||| |||||| |||||||||||||||| |||||| Sbjct: 222 gatgggctcgtgaaggggctccgtgaggcggccaaggccattgagaagcatgccgctcag 281 Query: 71 ctttgtgtgctggctgaggattgtgaccagcctgattacgtgaagcttgttaaggcacta 130 ||||| ||||| |||||||| ||||||||||||||||| || ||| | || |||||||| Sbjct: 282 ctttgcgtgcttgctgaggactgtgaccagcctgattatgtcaagttggtcaaggcactc 341 Query: 131 tgcgctgagcacaatgttcacctggttactgtgccaagtgctaaaactctcggagagtgg 190 ||||||||||||||||||||||| ||||| ||||| |||||||||||||| || |||||| Sbjct: 342 tgcgctgagcacaatgttcacctcgttaccgtgcctagtgctaaaactcttggcgagtgg 401 Query: 191 gcagggctttgcaagatcgacactgagggcaaggcaaggaaggttgtangctgctcttgc 250 ||||||||||||||||| || ||||||||||||| |||||||| ||| ||||||| ||| Sbjct: 402 gcagggctttgcaagattgattctgagggcaaggcgaggaaggtcgtaggctgctcctgc 461 Query: 251 attgttgtcaaggactatggtgaagaatccgagggccttaacat 294 | ||||||||||||| |||||||| || |||||||| ||||| Sbjct: 462 gtcgttgtcaaggacttcggtgaagagtcagagggcctcaacat 505
>dbj|AK059090.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-B10, full insert sequence Length = 751 Score = 303 bits (153), Expect = 2e-79 Identities = 251/284 (88%) Strand = Plus / Plus Query: 11 gatggccttgtgaaggggctccgtgaggctgccaagtccattgagaagcatgctgctcag 70 ||||| || |||||||||||||||||||| |||||| |||||||||||||||| |||||| Sbjct: 225 gatgggctcgtgaaggggctccgtgaggcggccaaggccattgagaagcatgccgctcag 284 Query: 71 ctttgtgtgctggctgaggattgtgaccagcctgattacgtgaagcttgttaaggcacta 130 ||||| ||||| |||||||| ||||||||||||||||| || ||| | || |||||||| Sbjct: 285 ctttgcgtgcttgctgaggactgtgaccagcctgattatgtcaagttggtcaaggcactc 344 Query: 131 tgcgctgagcacaatgttcacctggttactgtgccaagtgctaaaactctcggagagtgg 190 ||||||||||||||||||||||| ||||| ||||| |||||||||||||| || |||||| Sbjct: 345 tgcgctgagcacaatgttcacctcgttaccgtgcctagtgctaaaactcttggcgagtgg 404 Query: 191 gcagggctttgcaagatcgacactgagggcaaggcaaggaaggttgtangctgctcttgc 250 ||||||||||||||||| || ||||||||||||| |||||||| ||| ||||||| ||| Sbjct: 405 gcagggctttgcaagattgattctgagggcaaggcgaggaaggtcgtaggctgctcctgc 464 Query: 251 attgttgtcaaggactatggtgaagaatccgagggccttaacat 294 | ||||||||||||| |||||||| || |||||||| ||||| Sbjct: 465 gtcgttgtcaaggacttcggtgaagagtcagagggcctcaacat 508
>gb|BT017926.1| Zea mays clone EL01N0519G01.c mRNA sequence Length = 580 Score = 299 bits (151), Expect = 3e-78 Identities = 246/278 (88%) Strand = Plus / Plus Query: 17 cttgtgaaggggctccgtgaggctgccaagtccattgagaagcatgctgctcagctttgt 76 ||||||||||| |||||||||||||||||| |||| |||||||| || ||||||||||| Sbjct: 46 cttgtgaagggtctccgtgaggctgccaaggccatcgagaagcacgccgctcagctttgc 105 Query: 77 gtgctggctgaggattgtgaccagcctgattacgtgaagcttgttaaggcactatgcgct 136 ||||| |||||||| ||||||||||| |||||||| ||||| || |||||||| |||||| Sbjct: 106 gtgcttgctgaggactgtgaccagccagattacgtcaagctggtgaaggcactctgcgct 165 Query: 137 gagcacaatgttcacctggttactgtgccaagtgctaaaactctcggagagtgggcaggg 196 |||||||||||||||||||| ||||| || ||||| ||||| || |||||||| ||| Sbjct: 166 gagcacaatgttcacctggtcactgttcctgccgctaagactcttggcgagtgggctggg 225 Query: 197 ctttgcaagatcgacactgagggcaaggcaaggaaggttgtangctgctcttgcattgtt 256 ||||||||||| ||| |||||||||||||||||||||||||| ||||||| ||| | || Sbjct: 226 ctttgcaagattgactctgagggcaaggcaaggaaggttgtaggctgctcctgcgtcgtc 285 Query: 257 gtcaaggactatggtgaagaatccgagggccttaacat 294 ||||||||||| ||||||||||| |||||||||||||| Sbjct: 286 gtcaaggactacggtgaagaatctgagggccttaacat 323
>gb|AY104036.1| Zea mays PCO068483 mRNA sequence Length = 845 Score = 297 bits (150), Expect = 1e-77 Identities = 258/293 (88%), Gaps = 1/293 (0%) Strand = Plus / Plus Query: 2 gtgctcatggatggccttgtgaaggggctccgtgaggctgccaagtccattgagaagcat 61 ||||||||| |||||||||||||||| || |||||||||||||| |||| ||||||||| Sbjct: 262 gtgctcatg-atggccttgtgaagggtcttcgtgaggctgccaaagccatcgagaagcat 320 Query: 62 gctgctcagctttgtgtgctggctgaggattgtgaccagcctgattacgtgaagcttgtt 121 || |||||||| || ||||| || ||||| || |||||||||||||| || ||||| || Sbjct: 321 gccgctcagctctgcgtgcttgccgaggactgcgaccagcctgattatgtcaagctggtg 380 Query: 122 aaggcactatgcgctgagcacaatgttcacctggttactgtgccaagtgctaaaactctc 181 ||||| || ||||||||||||||||| ||||||||||||||||| || || |||||||| Sbjct: 381 aaggctctctgcgctgagcacaatgtccacctggttactgtgcctagcgccaaaactctt 440 Query: 182 ggagagtgggcagggctttgcaagatcgacactgagggcaaggcaaggaaggttgtangc 241 ||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||| || Sbjct: 441 ggagagtgggctgggctttgcaagatcgactctgagggcaaggcgaggaaggttgtaggc 500 Query: 242 tgctcttgcattgttgtcaaggactatggtgaagaatccgagggccttaacat 294 ||||| || |||||||||||||||| || |||||||| || ||||||||||| Sbjct: 501 tgctcctgtgttgttgtcaaggactacggcgaagaatctgaaggccttaacat 553
>gb|BT017581.1| Zea mays clone EL01N0429E05.c mRNA sequence Length = 747 Score = 295 bits (149), Expect = 4e-77 Identities = 250/284 (88%) Strand = Plus / Plus Query: 11 gatggccttgtgaaggggctccgtgaggctgccaagtccattgagaagcatgctgctcag 70 ||||||||||||||||| || |||||||||||||| |||| ||||||||||| |||||| Sbjct: 177 gatggccttgtgaagggtcttcgtgaggctgccaaagccatcgagaagcatgccgctcag 236 Query: 71 ctttgtgtgctggctgaggattgtgaccagcctgattacgtgaagcttgttaaggcacta 130 || || ||||| || ||||| || |||||||||||||| || ||||| || ||||| || Sbjct: 237 ctctgcgtgcttgccgaggactgcgaccagcctgattatgtcaagctggtgaaggctctc 296 Query: 131 tgcgctgagcacaatgttcacctggttactgtgccaagtgctaaaactctcggagagtgg 190 ||||||||||||||||| ||||||||||||||||| || || |||||||| ||||||||| Sbjct: 297 tgcgctgagcacaatgtccacctggttactgtgcctagcgccaaaactcttggagagtgg 356 Query: 191 gcagggctttgcaagatcgacactgagggcaaggcaaggaaggttgtangctgctcttgc 250 || |||||||||||||||||| ||||||||||||| |||||||||||| ||||||| || Sbjct: 357 gctgggctttgcaagatcgactctgagggcaaggcgaggaaggttgtaggctgctcctgt 416 Query: 251 attgttgtcaaggactatggtgaagaatccgagggccttaacat 294 |||||||||||||||| || |||||||| || ||||||||||| Sbjct: 417 gttgttgtcaaggactacggcgaagaatctgaaggccttaacat 460
>gb|AY109069.1| Zea mays PCO128954 mRNA sequence Length = 755 Score = 268 bits (135), Expect = 9e-69 Identities = 255/294 (86%), Gaps = 1/294 (0%) Strand = Plus / Plus Query: 1 agtgctcatggatggccttgtgaaggggctccgtgaggctgccaagtccattgagaagca 60 |||||||||| |||| ||||||||||| || || |||||||||||| ||||||||||||| Sbjct: 231 agtgctcatg-atggacttgtgaagggtcttcgcgaggctgccaaggccattgagaagca 289 Query: 61 tgctgctcagctttgtgtgctggctgaggattgtgaccagcctgattacgtgaagcttgt 120 ||||||||||||||| || || |||||||| ||||||||||| ||||| || ||||| || Sbjct: 290 tgctgctcagctttgcgttcttgctgaggactgtgaccagccagattatgtcaagctggt 349 Query: 121 taaggcactatgcgctgagcacaatgttcacctggttactgtgccaagtgctaaaactct 180 ||||| || || ||||| |||||||||||||| || ||||| || |||||| ||||| Sbjct: 350 gaaggcgctctgtgctgaacacaatgttcaccttgtcactgttcctgctgctaagactct 409 Query: 181 cggagagtgggcagggctttgcaagatcgacactgagggcaaggcaaggaaggttgtang 240 || |||||||| |||||||||||||| ||| | |||||||||||||||||||||||| | Sbjct: 410 tggcgagtgggctgggctttgcaagattgactccgagggcaaggcaaggaaggttgtagg 469 Query: 241 ctgctcttgcattgttgtcaaggactatggtgaagaatccgagggccttaacat 294 |||||| || | |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 470 ctgctcctgtgtcgttgtcaaggactacggtgaagaatctgagggccttaacat 523
>gb|BT018309.1| Zea mays clone EL01T0206H08.c mRNA sequence Length = 608 Score = 266 bits (134), Expect = 4e-68 Identities = 254/293 (86%), Gaps = 1/293 (0%) Strand = Plus / Plus Query: 2 gtgctcatggatggccttgtgaaggggctccgtgaggctgccaagtccattgagaagcat 61 ||||||||| |||||||||| ||||| || |||||||||||||| | |||||||||||| Sbjct: 182 gtgctcatg-atggccttgttaagggtcttcgtgaggctgccaaagcaattgagaagcat 240 Query: 62 gctgctcagctttgtgtgctggctgaggattgtgaccagcctgattacgtgaagcttgtt 121 |||||||||||||| ||||| || ||||| ||||||||||||||||| || ||||| || Sbjct: 241 gctgctcagctttgcgtgcttgcggaggactgtgaccagcctgattatgtcaagctggtg 300 Query: 122 aaggcactatgcgctgagcacaatgttcacctggttactgtgccaagtgctaaaactctc 181 ||||| || ||| |||||||||| |||||||||||||||||||| || ||||||||||| Sbjct: 301 aaggctctttgctctgagcacaacgttcacctggttactgtgcctagcgctaaaactctt 360 Query: 182 ggagagtgggcagggctttgcaagatcgacactgagggcaaggcaaggaaggttgtangc 241 || || ||| | |||||||||||||| || ||||||||||||| ||||||||||| | Sbjct: 361 ggcgaatggtctgggctttgcaagattgattctgagggcaaggcgaggaaggttgtgggt 420 Query: 242 tgctcttgcattgttgtcaaggactatggtgaagaatccgagggccttaacat 294 ||||| || |||| |||||||||||||| |||||||| |||||||||||||| Sbjct: 421 tgctcctgtgttgtcgtcaaggactatggcgaagaatctgagggccttaacat 473
>ref|XM_477174.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2015 Score = 218 bits (110), Expect = 8e-54 Identities = 167/186 (89%) Strand = Plus / Plus Query: 11 gatggccttgtgaaggggctccgtgaggctgccaagtccattgagaagcatgctgctcag 70 ||||| || |||||||||||||||||||| |||||| |||||||||||||||| |||||| Sbjct: 1154 gatgggctcgtgaaggggctccgtgaggcggccaaggccattgagaagcatgccgctcag 1213 Query: 71 ctttgtgtgctggctgaggattgtgaccagcctgattacgtgaagcttgttaaggcacta 130 ||||| ||||| |||||||| ||||||||||||||||| || ||| | || |||||||| Sbjct: 1214 ctttgcgtgcttgctgaggactgtgaccagcctgattatgtcaagttggtcaaggcactc 1273 Query: 131 tgcgctgagcacaatgttcacctggttactgtgccaagtgctaaaactctcggagagtgg 190 ||||||||||||||||||||||| ||||| ||||| |||||||||||||| || |||||| Sbjct: 1274 tgcgctgagcacaatgttcacctcgttaccgtgcctagtgctaaaactcttggcgagtgg 1333 Query: 191 gcaggg 196 |||||| Sbjct: 1334 gcaggg 1339 Score = 65.9 bits (33), Expect = 7e-08 Identities = 59/68 (86%) Strand = Plus / Plus Query: 196 gctttgcaagatcgacactgagggcaaggcaaggaaggttgtangctgctcttgcattgt 255 |||||||||||| || ||||||||||||| |||||||| ||| ||||||| ||| | || Sbjct: 1600 gctttgcaagattgattctgagggcaaggcgaggaaggtcgtaggctgctcctgcgtcgt 1659 Query: 256 tgtcaagg 263 |||||||| Sbjct: 1660 tgtcaagg 1667
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 218 bits (110), Expect = 8e-54 Identities = 167/186 (89%) Strand = Plus / Minus Query: 11 gatggccttgtgaaggggctccgtgaggctgccaagtccattgagaagcatgctgctcag 70 ||||| || |||||||||||||||||||| |||||| |||||||||||||||| |||||| Sbjct: 7266193 gatgggctcgtgaaggggctccgtgaggcggccaaggccattgagaagcatgccgctcag 7266134 Query: 71 ctttgtgtgctggctgaggattgtgaccagcctgattacgtgaagcttgttaaggcacta 130 ||||| ||||| |||||||| ||||||||||||||||| || ||| | || |||||||| Sbjct: 7266133 ctttgcgtgcttgctgaggactgtgaccagcctgattatgtcaagttggtcaaggcactc 7266074 Query: 131 tgcgctgagcacaatgttcacctggttactgtgccaagtgctaaaactctcggagagtgg 190 ||||||||||||||||||||||| ||||| ||||| |||||||||||||| || |||||| Sbjct: 7266073 tgcgctgagcacaatgttcacctcgttaccgtgcctagtgctaaaactcttggcgagtgg 7266014 Query: 191 gcaggg 196 |||||| Sbjct: 7266013 gcaggg 7266008 Score = 198 bits (100), Expect = 7e-48 Identities = 173/196 (88%), Gaps = 1/196 (0%) Strand = Plus / Plus Query: 1 agtgctcatggatggccttgtgaaggggctccgtgaggctgccaagtccattgagaagca 60 |||||||||| |||| ||||||||||| |||||||||||||||||| |||| |||||||| Sbjct: 2647204 agtgctcatg-atgggcttgtgaagggtctccgtgaggctgccaaggccatcgagaagca 2647262 Query: 61 tgctgctcagctttgtgtgctggctgaggattgtgaccagcctgattacgtgaagcttgt 120 ||||||||||||||||||||| |||||||| || ||||| |||||||| || ||| | || Sbjct: 2647263 tgctgctcagctttgtgtgcttgctgaggactgcgaccaacctgattatgtcaagttggt 2647322 Query: 121 taaggcactatgcgctgagcacaatgttcacctggttactgtgccaagtgctaaaactct 180 |||||| || || ||||||||||| |||||||| ||||| ||||| |||||||| ||||| Sbjct: 2647323 taaggctctgtgtgctgagcacaacgttcaccttgttaccgtgcctagtgctaagactct 2647382 Query: 181 cggagagtgggcaggg 196 || |||||||||||| Sbjct: 2647383 tggcgagtgggcaggg 2647398 Score = 81.8 bits (41), Expect = 1e-12 Identities = 61/68 (89%) Strand = Plus / Plus Query: 196 gctttgcaagatcgacactgagggcaaggcaaggaaggttgtangctgctcttgcattgt 255 |||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||| | || Sbjct: 2648042 gctttgcaagattgactctgagggcaaggcaaggaaggttgtgggctgctcctgcgtcgt 2648101 Query: 256 tgtcaagg 263 |||||||| Sbjct: 2648102 tgtcaagg 2648109 Score = 65.9 bits (33), Expect = 7e-08 Identities = 59/68 (86%) Strand = Plus / Minus Query: 196 gctttgcaagatcgacactgagggcaaggcaaggaaggttgtangctgctcttgcattgt 255 |||||||||||| || ||||||||||||| |||||||| ||| ||||||| ||| | || Sbjct: 7265747 gctttgcaagattgattctgagggcaaggcgaggaaggtcgtaggctgctcctgcgtcgt 7265688 Query: 256 tgtcaagg 263 |||||||| Sbjct: 7265687 tgtcaagg 7265680 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Plus Query: 261 aggactatggtgaagaatccgagggccttaacat 294 |||||||||||||||| || |||||||||||||| Sbjct: 2648197 aggactatggtgaagagtctgagggccttaacat 2648230
>dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0016A21 Length = 144076 Score = 218 bits (110), Expect = 8e-54 Identities = 167/186 (89%) Strand = Plus / Minus Query: 11 gatggccttgtgaaggggctccgtgaggctgccaagtccattgagaagcatgctgctcag 70 ||||| || |||||||||||||||||||| |||||| |||||||||||||||| |||||| Sbjct: 106677 gatgggctcgtgaaggggctccgtgaggcggccaaggccattgagaagcatgccgctcag 106618 Query: 71 ctttgtgtgctggctgaggattgtgaccagcctgattacgtgaagcttgttaaggcacta 130 ||||| ||||| |||||||| ||||||||||||||||| || ||| | || |||||||| Sbjct: 106617 ctttgcgtgcttgctgaggactgtgaccagcctgattatgtcaagttggtcaaggcactc 106558 Query: 131 tgcgctgagcacaatgttcacctggttactgtgccaagtgctaaaactctcggagagtgg 190 ||||||||||||||||||||||| ||||| ||||| |||||||||||||| || |||||| Sbjct: 106557 tgcgctgagcacaatgttcacctcgttaccgtgcctagtgctaaaactcttggcgagtgg 106498 Query: 191 gcaggg 196 |||||| Sbjct: 106497 gcaggg 106492 Score = 65.9 bits (33), Expect = 7e-08 Identities = 59/68 (86%) Strand = Plus / Minus Query: 196 gctttgcaagatcgacactgagggcaaggcaaggaaggttgtangctgctcttgcattgt 255 |||||||||||| || ||||||||||||| |||||||| ||| ||||||| ||| | || Sbjct: 106231 gctttgcaagattgattctgagggcaaggcgaggaaggtcgtaggctgctcctgcgtcgt 106172 Query: 256 tgtcaagg 263 |||||||| Sbjct: 106171 tgtcaagg 106164
>dbj|AK071026.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078K20, full insert sequence Length = 2015 Score = 218 bits (110), Expect = 8e-54 Identities = 167/186 (89%) Strand = Plus / Plus Query: 11 gatggccttgtgaaggggctccgtgaggctgccaagtccattgagaagcatgctgctcag 70 ||||| || |||||||||||||||||||| |||||| |||||||||||||||| |||||| Sbjct: 1154 gatgggctcgtgaaggggctccgtgaggcggccaaggccattgagaagcatgccgctcag 1213 Query: 71 ctttgtgtgctggctgaggattgtgaccagcctgattacgtgaagcttgttaaggcacta 130 ||||| ||||| |||||||| ||||||||||||||||| || ||| | || |||||||| Sbjct: 1214 ctttgcgtgcttgctgaggactgtgaccagcctgattatgtcaagttggtcaaggcactc 1273 Query: 131 tgcgctgagcacaatgttcacctggttactgtgccaagtgctaaaactctcggagagtgg 190 ||||||||||||||||||||||| ||||| ||||| |||||||||||||| || |||||| Sbjct: 1274 tgcgctgagcacaatgttcacctcgttaccgtgcctagtgctaaaactcttggcgagtgg 1333 Query: 191 gcaggg 196 |||||| Sbjct: 1334 gcaggg 1339 Score = 65.9 bits (33), Expect = 7e-08 Identities = 59/68 (86%) Strand = Plus / Plus Query: 196 gctttgcaagatcgacactgagggcaaggcaaggaaggttgtangctgctcttgcattgt 255 |||||||||||| || ||||||||||||| |||||||| ||| ||||||| ||| | || Sbjct: 1600 gctttgcaagattgattctgagggcaaggcgaggaaggtcgtaggctgctcctgcgtcgt 1659 Query: 256 tgtcaagg 263 |||||||| Sbjct: 1660 tgtcaagg 1667
>dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1027_G06 Length = 121885 Score = 198 bits (100), Expect = 7e-48 Identities = 173/196 (88%), Gaps = 1/196 (0%) Strand = Plus / Plus Query: 1 agtgctcatggatggccttgtgaaggggctccgtgaggctgccaagtccattgagaagca 60 |||||||||| |||| ||||||||||| |||||||||||||||||| |||| |||||||| Sbjct: 72922 agtgctcatg-atgggcttgtgaagggtctccgtgaggctgccaaggccatcgagaagca 72980 Query: 61 tgctgctcagctttgtgtgctggctgaggattgtgaccagcctgattacgtgaagcttgt 120 ||||||||||||||||||||| |||||||| || ||||| |||||||| || ||| | || Sbjct: 72981 tgctgctcagctttgtgtgcttgctgaggactgcgaccaacctgattatgtcaagttggt 73040 Query: 121 taaggcactatgcgctgagcacaatgttcacctggttactgtgccaagtgctaaaactct 180 |||||| || || ||||||||||| |||||||| ||||| ||||| |||||||| ||||| Sbjct: 73041 taaggctctgtgtgctgagcacaacgttcaccttgttaccgtgcctagtgctaagactct 73100 Query: 181 cggagagtgggcaggg 196 || |||||||||||| Sbjct: 73101 tggcgagtgggcaggg 73116 Score = 81.8 bits (41), Expect = 1e-12 Identities = 61/68 (89%) Strand = Plus / Plus Query: 196 gctttgcaagatcgacactgagggcaaggcaaggaaggttgtangctgctcttgcattgt 255 |||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||| | || Sbjct: 73760 gctttgcaagattgactctgagggcaaggcaaggaaggttgtgggctgctcctgcgtcgt 73819 Query: 256 tgtcaagg 263 |||||||| Sbjct: 73820 tgtcaagg 73827 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Plus Query: 261 aggactatggtgaagaatccgagggccttaacat 294 |||||||||||||||| || |||||||||||||| Sbjct: 73915 aggactatggtgaagagtctgagggccttaacat 73948
>emb|BX819283.1|CNS0A9Q1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB63ZH09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 702 Score = 111 bits (56), Expect = 1e-21 Identities = 155/188 (82%) Strand = Plus / Plus Query: 50 attgagaagcatgctgctcagctttgtgtgctggctgaggattgtgaccagcctgattac 109 |||||||||| | ||||||||| ||||| |||||||| ||||| |||| |||||||| Sbjct: 220 attgagaagcgtaatgctcagctctgtgtcctggctgaagattgcaaccaacctgattat 279 Query: 110 gtgaagcttgttaaggcactatgcgctgagcacaatgttcacctggttactgtgccaagt 169 |||||||||||||| || || |||||||| |||| | | || ||||||| |||||| Sbjct: 280 gtgaagcttgttaaagctctttgcgctgaccacagcatcaaattgcttactgttccaagt 339 Query: 170 gctaaaactctcggagagtgggcagggctttgcaagatcgacactgagggcaaggcaagg 229 || ||||| ||||| || ||||| || ||||||||||| || |||||||||| |||||| Sbjct: 340 gccaaaacactcggcgaatgggctggtctttgcaagattgattctgagggcaatgcaagg 399 Query: 230 aaggttgt 237 |||||||| Sbjct: 400 aaggttgt 407
>ref|NM_179850.1| Arabidopsis thaliana structural constituent of ribosome AT2G32060 transcript variant AT2G32060.3 mRNA, complete cds Length = 694 Score = 103 bits (52), Expect = 3e-19 Identities = 154/188 (81%) Strand = Plus / Plus Query: 50 attgagaagcatgctgctcagctttgtgtgctggctgaggattgtgaccagcctgattac 109 |||||||||| | ||||||||| ||||| |||||||| ||||| |||| |||||||| Sbjct: 239 attgagaagcgtaatgctcagctctgtgtcctggctgaagattgcaaccaacctgattat 298 Query: 110 gtgaagcttgttaaggcactatgcgctgagcacaatgttcacctggttactgtgccaagt 169 || ||||||||||| || || |||||||| |||| | | || ||||||| |||||| Sbjct: 299 gtcaagcttgttaaagctctttgcgctgaccacagcatcaaattgcttactgttccaagt 358 Query: 170 gctaaaactctcggagagtgggcagggctttgcaagatcgacactgagggcaaggcaagg 229 || ||||| ||||| || ||||| || ||||||||||| || |||||||||| |||||| Sbjct: 359 gccaaaacactcggcgaatgggctggtctttgcaagattgattctgagggcaatgcaagg 418 Query: 230 aaggttgt 237 |||||||| Sbjct: 419 aaggttgt 426
>ref|NM_128766.4| Arabidopsis thaliana structural constituent of ribosome AT2G32060 transcript variant AT2G32060.1 mRNA, complete cds Length = 759 Score = 103 bits (52), Expect = 3e-19 Identities = 154/188 (81%) Strand = Plus / Plus Query: 50 attgagaagcatgctgctcagctttgtgtgctggctgaggattgtgaccagcctgattac 109 |||||||||| | ||||||||| ||||| |||||||| ||||| |||| |||||||| Sbjct: 277 attgagaagcgtaatgctcagctctgtgtcctggctgaagattgcaaccaacctgattat 336 Query: 110 gtgaagcttgttaaggcactatgcgctgagcacaatgttcacctggttactgtgccaagt 169 || ||||||||||| || || |||||||| |||| | | || ||||||| |||||| Sbjct: 337 gtcaagcttgttaaagctctttgcgctgaccacagcatcaaattgcttactgttccaagt 396 Query: 170 gctaaaactctcggagagtgggcagggctttgcaagatcgacactgagggcaaggcaagg 229 || ||||| ||||| || ||||| || ||||||||||| || |||||||||| |||||| Sbjct: 397 gccaaaacactcggcgaatgggctggtctttgcaagattgattctgagggcaatgcaagg 456 Query: 230 aaggttgt 237 |||||||| Sbjct: 457 aaggttgt 464
>ref|NM_179849.2| Arabidopsis thaliana structural constituent of ribosome AT2G32060 transcript variant AT2G32060.2 mRNA, complete cds Length = 723 Score = 103 bits (52), Expect = 3e-19 Identities = 154/188 (81%) Strand = Plus / Plus Query: 50 attgagaagcatgctgctcagctttgtgtgctggctgaggattgtgaccagcctgattac 109 |||||||||| | ||||||||| ||||| |||||||| ||||| |||| |||||||| Sbjct: 241 attgagaagcgtaatgctcagctctgtgtcctggctgaagattgcaaccaacctgattat 300 Query: 110 gtgaagcttgttaaggcactatgcgctgagcacaatgttcacctggttactgtgccaagt 169 || ||||||||||| || || |||||||| |||| | | || ||||||| |||||| Sbjct: 301 gtcaagcttgttaaagctctttgcgctgaccacagcatcaaattgcttactgttccaagt 360 Query: 170 gctaaaactctcggagagtgggcagggctttgcaagatcgacactgagggcaaggcaagg 229 || ||||| ||||| || ||||| || ||||||||||| || |||||||||| |||||| Sbjct: 361 gccaaaacactcggcgaatgggctggtctttgcaagattgattctgagggcaatgcaagg 420 Query: 230 aaggttgt 237 |||||||| Sbjct: 421 aaggttgt 428
>gb|AY133636.1| Arabidopsis thaliana At2g32060/F22D22.19 mRNA, complete cds Length = 435 Score = 103 bits (52), Expect = 3e-19 Identities = 154/188 (81%) Strand = Plus / Plus Query: 50 attgagaagcatgctgctcagctttgtgtgctggctgaggattgtgaccagcctgattac 109 |||||||||| | ||||||||| ||||| |||||||| ||||| |||| |||||||| Sbjct: 163 attgagaagcgtaatgctcagctctgtgtcctggctgaagattgcaaccaacctgattat 222 Query: 110 gtgaagcttgttaaggcactatgcgctgagcacaatgttcacctggttactgtgccaagt 169 || ||||||||||| || || |||||||| |||| | | || ||||||| |||||| Sbjct: 223 gtcaagcttgttaaagctctttgcgctgaccacagcatcaaattgcttactgttccaagt 282 Query: 170 gctaaaactctcggagagtgggcagggctttgcaagatcgacactgagggcaaggcaagg 229 || ||||| ||||| || ||||| || ||||||||||| || |||||||||| |||||| Sbjct: 283 gccaaaacactcggcgaatgggctggtctttgcaagattgattctgagggcaatgcaagg 342 Query: 230 aaggttgt 237 |||||||| Sbjct: 343 aaggttgt 350
>gb|AY050324.1| Arabidopsis thaliana At2g32060/F22D22.19 mRNA, complete cds Length = 696 Score = 103 bits (52), Expect = 3e-19 Identities = 154/188 (81%) Strand = Plus / Plus Query: 50 attgagaagcatgctgctcagctttgtgtgctggctgaggattgtgaccagcctgattac 109 |||||||||| | ||||||||| ||||| |||||||| ||||| |||| |||||||| Sbjct: 241 attgagaagcgtaatgctcagctctgtgtcctggctgaagattgcaaccaacctgattat 300 Query: 110 gtgaagcttgttaaggcactatgcgctgagcacaatgttcacctggttactgtgccaagt 169 || ||||||||||| || || |||||||| |||| | | || ||||||| |||||| Sbjct: 301 gtcaagcttgttaaagctctttgcgctgaccacagcatcaaattgcttactgttccaagt 360 Query: 170 gctaaaactctcggagagtgggcagggctttgcaagatcgacactgagggcaaggcaagg 229 || ||||| ||||| || ||||| || ||||||||||| || |||||||||| |||||| Sbjct: 361 gccaaaacactcggcgaatgggctggtctttgcaagattgattctgagggcaatgcaagg 420 Query: 230 aaggttgt 237 |||||||| Sbjct: 421 aaggttgt 428
>gb|AY085161.1| Arabidopsis thaliana clone 13453 mRNA, complete sequence Length = 732 Score = 103 bits (52), Expect = 3e-19 Identities = 154/188 (81%) Strand = Plus / Plus Query: 50 attgagaagcatgctgctcagctttgtgtgctggctgaggattgtgaccagcctgattac 109 |||||||||| | ||||||||| ||||| |||||||| ||||| |||| |||||||| Sbjct: 277 attgagaagcgtaatgctcagctctgtgtcctggctgaagattgcaaccaacctgattat 336 Query: 110 gtgaagcttgttaaggcactatgcgctgagcacaatgttcacctggttactgtgccaagt 169 || ||||||||||| || || |||||||| |||| | | || ||||||| |||||| Sbjct: 337 gtcaagcttgttaaagctctttgcgctgaccacagcatcaaattgcttactgttccaagt 396 Query: 170 gctaaaactctcggagagtgggcagggctttgcaagatcgacactgagggcaaggcaagg 229 || ||||| ||||| || ||||| || ||||||||||| || |||||||||| |||||| Sbjct: 397 gccaaaacactcggcgaatgggctggtctttgcaagattgattctgagggcaatgcaagg 456 Query: 230 aaggttgt 237 |||||||| Sbjct: 457 aaggttgt 464
>gb|AC122164.6| Medicago truncatula clone mth2-24h4, complete sequence Length = 112428 Score = 77.8 bits (39), Expect = 2e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 53 gagaagcatgctgctcagctttgtgtgctggctgaggattgtgaccagcctgattacgt 111 |||||||||||||| ||||| ||||| || ||||||||||||||||| ||||||||||| Sbjct: 54496 gagaagcatgctgcacagctctgtgttcttgctgaggattgtgaccaacctgattacgt 54438
>emb|CT573502.2| Medicago truncatula chromosome 5 clone mte1-69f21, COMPLETE SEQUENCE Length = 89977 Score = 77.8 bits (39), Expect = 2e-11 Identities = 84/99 (84%) Strand = Plus / Minus Query: 50 attgagaagcatgctgctcagctttgtgtgctggctgaggattgtgaccagcctgattac 109 ||||||||||||||||| ||||||||||| || ||||| ||||||||||| |||||||| Sbjct: 44250 attgagaagcatgctgcacagctttgtgttctagctgaagattgtgaccaacctgattat 44191 Query: 110 gtgaagcttgttaaggcactatgcgctgagcacaatgtt 148 || || | || || || || ||||| |||||||||||| Sbjct: 44190 gtcaaattggtgaaagccctctgcgcagagcacaatgtt 44152
>gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D22 map TEn5, complete sequence Length = 103194 Score = 67.9 bits (34), Expect = 2e-08 Identities = 79/94 (84%) Strand = Plus / Plus Query: 50 attgagaagcatgctgctcagctttgtgtgctggctgaggattgtgaccagcctgattac 109 |||||||||| | ||||||||| ||||| |||||||| ||||| |||| |||||||| Sbjct: 49702 attgagaagcgtaatgctcagctctgtgtcctggctgaagattgcaaccaacctgattat 49761 Query: 110 gtgaagcttgttaaggcactatgcgctgagcaca 143 || ||||||||||| || || |||||||| |||| Sbjct: 49762 gtcaagcttgttaaagctctttgcgctgaccaca 49795 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Plus Query: 196 gctttgcaagatcgacactgagggcaaggcaaggaaggttgt 237 |||||||||||| || |||||||||| |||||||||||||| Sbjct: 49936 gctttgcaagattgattctgagggcaatgcaaggaaggttgt 49977
>gb|AF154659.1| Nicotiana tabacum clone PR50 mRNA sequence Length = 708 Score = 67.9 bits (34), Expect = 2e-08 Identities = 82/98 (83%) Strand = Plus / Minus Query: 50 attgagaagcatgctgctcagctttgtgtgctggctgaggattgtgaccagcctgattac 109 ||||||||||||||||| |||||||||||||| || ||||| || |||||||| || || Sbjct: 479 attgagaagcatgctgcgcagctttgtgtgctagcagaggactgcgaccagccagactat 420 Query: 110 gtgaagcttgttaaggcactatgcgctgagcacaatgt 147 || ||||| || || || || || ||||| |||||||| Sbjct: 419 gtcaagctggtcaaagctctttgtgctgatcacaatgt 382
>gb|AC153003.14| Medicago truncatula clone mth2-96o5, complete sequence Length = 93881 Score = 65.9 bits (33), Expect = 7e-08 Identities = 69/81 (85%) Strand = Plus / Minus Query: 68 cagctttgtgtgctggctgaggattgtgaccagcctgattacgtgaagcttgttaaggca 127 ||||||||||| || || || ||||||||||||||||| || || || ||||| ||||| Sbjct: 18473 cagctttgtgttcttgcagaagattgtgaccagcctgactatgttaaacttgtcaaggct 18414 Query: 128 ctatgcgctgagcacaatgtt 148 || || ||||||||||||||| Sbjct: 18413 ctttgtgctgagcacaatgtt 18393
>dbj|AB180426.1| Plutella xylostella mRNA for Ribosomal protein S21, complete cds Length = 494 Score = 46.1 bits (23), Expect = 0.063 Identities = 50/59 (84%) Strand = Plus / Plus Query: 179 ctcggagagtgggcagggctttgcaagatcgacactgagggcaaggcaaggaaggttgt 237 ||||| |||||||| || || ||||||||||||| || |||||||| |||||| |||| Sbjct: 294 ctcggtgagtgggccggtctgtgcaagatcgacaaggacggcaaggctaggaagattgt 352
>gb|BT012865.1| Lycopersicon esculentum clone 113957F, mRNA sequence Length = 749 Score = 44.1 bits (22), Expect = 0.25 Identities = 43/50 (86%) Strand = Plus / Plus Query: 50 attgagaagcatgctgctcagctttgtgtgctggctgaggattgtgacca 99 ||||||||||||||||| || ||||| || |||| ||||| |||||||| Sbjct: 223 attgagaagcatgctgcccaactttgcgttttggcagaggactgtgacca 272
>gb|AF125446.1| Caenorhabditis elegans cosmid R05C11, complete sequence Length = 45770 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Plus Query: 258 tcaaggactatggtgaagaat 278 ||||||||||||||||||||| Sbjct: 42319 tcaaggactatggtgaagaat 42339
>gb|DQ066262.1| Ixodes scapularis isolate ISN-L-128 ribosomal protein S12 mRNA, complete cds Length = 399 Score = 42.1 bits (21), Expect = 0.98 Identities = 36/41 (87%) Strand = Plus / Plus Query: 185 gagtgggcagggctttgcaagatcgacactgagggcaaggc 225 |||||||| || || ||||||||||||| ||||||||||| Sbjct: 256 gagtgggcgggcctgtgcaagatcgacaaagagggcaaggc 296
>ref|NM_067760.2| Caenorhabditis elegans R05C11.3 (ATPase) mRNA, complete cds Length = 4001 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Plus Query: 258 tcaaggactatggtgaagaat 278 ||||||||||||||||||||| Sbjct: 2673 tcaaggactatggtgaagaat 2693
>gb|AC121813.3| Mus musculus BAC clone RP23-457E5 from 9, complete sequence Length = 178176 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 ggttactgtgccaagtgctaa 174 ||||||||||||||||||||| Sbjct: 102535 ggttactgtgccaagtgctaa 102555
>emb|AJ010708.1|CEL010708 Caenorhabditis elegans mRNA for calcium ATPase, isoform 2 Length = 4023 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Plus Query: 258 tcaaggactatggtgaagaat 278 ||||||||||||||||||||| Sbjct: 2695 tcaaggactatggtgaagaat 2715
>ref|NM_101461.3| Arabidopsis thaliana structural constituent of ribosome AT1G15930 transcript variant AT1G15930.1 mRNA, complete cds Length = 861 Score = 40.1 bits (20), Expect = 3.9 Identities = 55/67 (82%) Strand = Plus / Plus Query: 200 tgcaagatcgacactgagggcaaggcaaggaaggttgtangctgctcttgcattgttgtc 259 |||||||| || ||||||| || || ||||||||||| | ||||| || |||||||| Sbjct: 496 tgcaagattgattctgagggtaatgccaggaaggttgttggatgctcatgtcttgttgtc 555 Query: 260 aaggact 266 ||||||| Sbjct: 556 aaggact 562
>ref|NM_179342.1| Arabidopsis thaliana structural constituent of ribosome AT1G15930 transcript variant AT1G15930.2 mRNA, complete cds Length = 758 Score = 40.1 bits (20), Expect = 3.9 Identities = 55/67 (82%) Strand = Plus / Plus Query: 200 tgcaagatcgacactgagggcaaggcaaggaaggttgtangctgctcttgcattgttgtc 259 |||||||| || ||||||| || || ||||||||||| | ||||| || |||||||| Sbjct: 393 tgcaagattgattctgagggtaatgccaggaaggttgttggatgctcatgtcttgttgtc 452 Query: 260 aaggact 266 ||||||| Sbjct: 453 aaggact 459
>emb|AL596090.11| Mouse DNA sequence from clone RP23-135F6 on chromosome 11 Contains the 5' end of the gene for the likely ortholog of H. sapiens target of myb1-like 2 (chicken) (TOM1L2) (A730055F12Rik), a glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene, the gene for a novel Leucine Rich Repeat domain-containing protein (4930449E07Rik), the Atpaf2 gene for ATP synthase mitochondrial F1 complex assembly factor 2, the gene for a novel protein (4933439F18Rik), an acid phosphatase 1 soluble (Acp1) pseudogene, a ribosomal protein S4, X-linked (Rps4x) pseudogene, the Drg2 gene for developmentally regulated GTP binding protein 2, the 5' end of the Myo15 gene for myosin XV and four CpG islands, complete sequence Length = 207440 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 tccgtgaggctgccaagtccattg 53 |||||||||||| ||||||||||| Sbjct: 5077 tccgtgaggctgacaagtccattg 5054
>gb|AY099330.1| Periplaneta americana ribosomal protein S12 mRNA, partial cds Length = 512 Score = 40.1 bits (20), Expect = 3.9 Identities = 49/59 (83%) Strand = Plus / Plus Query: 218 ggcaaggcaaggaaggttgtangctgctcttgcattgttgtcaaggactatggtgaaga 276 |||||||| ||||| ||||| | ||||| || ||||||| ||||| ||||||||||| Sbjct: 307 ggcaaggctaggaaagttgtcggttgctcctgtgttgttgttaaggattatggtgaaga 365
>gb|AY054130.1| Arabidopsis thaliana At1g15930/T24D18_3 mRNA, complete cds Length = 435 Score = 40.1 bits (20), Expect = 3.9 Identities = 55/67 (82%) Strand = Plus / Plus Query: 200 tgcaagatcgacactgagggcaaggcaaggaaggttgtangctgctcttgcattgttgtc 259 |||||||| || ||||||| || || ||||||||||| | ||||| || |||||||| Sbjct: 313 tgcaagattgattctgagggtaatgccaggaaggttgttggatgctcatgtcttgttgtc 372 Query: 260 aaggact 266 ||||||| Sbjct: 373 aaggact 379
>gb|AF380626.1|AF380626 Arabidopsis thaliana At1g15930/T24D18_3 mRNA, complete cds Length = 692 Score = 40.1 bits (20), Expect = 3.9 Identities = 55/67 (82%) Strand = Plus / Plus Query: 200 tgcaagatcgacactgagggcaaggcaaggaaggttgtangctgctcttgcattgttgtc 259 |||||||| || ||||||| || || ||||||||||| | ||||| || |||||||| Sbjct: 393 tgcaagattgattctgagggtaatgccaggaaggttgttggatgctcatgtcttgttgtc 452 Query: 260 aaggact 266 ||||||| Sbjct: 453 aaggact 459
>emb|BX813855.1|CNS0AEMV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB43ZB03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 635 Score = 40.1 bits (20), Expect = 3.9 Identities = 55/67 (82%) Strand = Plus / Plus Query: 200 tgcaagatcgacactgagggcaaggcaaggaaggttgtangctgctcttgcattgttgtc 259 |||||||| || ||||||| || || ||||||||||| | ||||| || |||||||| Sbjct: 372 tgcaagattgattctgagggtaatgccaggaaggttgttggatgctcatgtcttgttgtc 431 Query: 260 aaggact 266 ||||||| Sbjct: 432 aaggact 438
>emb|BX815848.1|CNS0ABMM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH12ZC08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 658 Score = 40.1 bits (20), Expect = 3.9 Identities = 55/67 (82%) Strand = Plus / Plus Query: 200 tgcaagatcgacactgagggcaaggcaaggaaggttgtangctgctcttgcattgttgtc 259 |||||||| || ||||||| || || ||||||||||| | ||||| || |||||||| Sbjct: 369 tgcaagattgattctgagggtaatgccaggaaggttgttggatgctcatgtcttgttgtc 428 Query: 260 aaggact 266 ||||||| Sbjct: 429 aaggact 435
>emb|BX818653.1|CNS0AB7K Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL90ZB11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 687 Score = 40.1 bits (20), Expect = 3.9 Identities = 55/67 (82%) Strand = Plus / Plus Query: 200 tgcaagatcgacactgagggcaaggcaaggaaggttgtangctgctcttgcattgttgtc 259 |||||||| || ||||||| || || ||||||||||| | ||||| || |||||||| Sbjct: 358 tgcaagattgattctgagggtaatgccaggaaggttgttggatgctcatgtcttgttgtc 417 Query: 260 aaggact 266 ||||||| Sbjct: 418 aaggact 424
>gb|AY084613.1| Arabidopsis thaliana clone 11328 mRNA, complete sequence Length = 782 Score = 40.1 bits (20), Expect = 3.9 Identities = 55/67 (82%) Strand = Plus / Plus Query: 200 tgcaagatcgacactgagggcaaggcaaggaaggttgtangctgctcttgcattgttgtc 259 |||||||| || ||||||| || || ||||||||||| | ||||| || |||||||| Sbjct: 496 tgcaagattgattctgagggtaatgccaggaaggttgttggatgctcatgtcttgttgtc 555 Query: 260 aaggact 266 ||||||| Sbjct: 556 aaggact 562
>gb|AC096624.23| Mus musculus strain C57BL/6J chromosome 11 clone rp23-326m22, complete sequence Length = 227682 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 tccgtgaggctgccaagtccattg 53 |||||||||||| ||||||||||| Sbjct: 10557 tccgtgaggctgacaagtccattg 10580
>emb|AJ011717.1|CPA011717 Cyanophora paradoxa mRNA for 40s ribosomal protein S12 Length = 560 Score = 40.1 bits (20), Expect = 3.9 Identities = 38/44 (86%) Strand = Plus / Plus Query: 179 ctcggagagtgggcagggctttgcaagatcgacactgagggcaa 222 ||||| ||||||| || |||||||||||||||| |||||||| Sbjct: 310 ctcggcgagtgggtcggcctttgcaagatcgacaaggagggcaa 353 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,233,775 Number of Sequences: 3902068 Number of extensions: 2233775 Number of successful extensions: 38610 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38506 Number of HSP's gapped (non-prelim): 103 length of query: 295 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 273 effective length of database: 17,147,199,772 effective search space: 4681185537756 effective search space used: 4681185537756 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)