ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baalm10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_493854.1| Oryza sativa (japonica cultivar-group), mRNA 74 5e-10
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 74 5e-10
3gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genom... 74 5e-10
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 74 5e-10
5dbj|AB189043.1| Oryza sativa (indica cultivar-group) OsPRR73 mRN... 74 5e-10
6dbj|AB189040.1| Oryza sativa (japonica cultivar-group) OsPRR73 m... 74 5e-10
7dbj|AK121136.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 5e-10
8gb|AF320254.1|AF320254 Azoarcus evansii aerobic 2-aminobenzoate ... 46 0.12
9ref|XM_364934.1| Magnaporthe grisea 70-15 hypothetical protein (... 44 0.49
10ref|XM_509099.1| PREDICTED: Pan troglodytes similar to mitogen-a... 42 1.9
11ref|XM_517879.1| PREDICTED: Pan troglodytes similar to Colorecta... 42 1.9
12ref|XM_581714.2| PREDICTED: Bos taurus similar to mitogen-activa... 42 1.9
13ref|XM_866211.1| PREDICTED: Bos taurus similar to mitogen-activa... 42 1.9
14ref|NM_002387.1| Homo sapiens mutated in colorectal cancers (MCC... 42 1.9
15ref|XM_852089.1| PREDICTED: Canis familiaris similar to Mitogen-... 42 1.9
16ref|XM_843722.1| PREDICTED: Canis familiaris similar to Mitogen-... 42 1.9
17emb|AL121956.21|HSDJ655C5 Human DNA sequence from clone RP4-655C... 42 1.9
18gb|BC037585.1| Homo sapiens, clone IMAGE:5532846, mRNA 42 1.9
19gb|BC050050.1| Homo sapiens mitogen-activated protein kinase kin... 42 1.9
20emb|CR858343.1| Pongo pygmaeus mRNA; cDNA DKFZp459K2433 (from cl... 42 1.9
21emb|CR857069.1| Pongo pygmaeus mRNA; cDNA DKFZp469F0810 (from cl... 42 1.9
22dbj|AK128596.1| Homo sapiens cDNA FLJ46755 fis, clone TRACH30233... 42 1.9
23dbj|AK094195.1| Homo sapiens cDNA FLJ36876 fis, clone ASTRO20191... 42 1.9
24dbj|AK096212.1| Homo sapiens cDNA FLJ38893 fis, clone NOVAR10000... 42 1.9
25gb|AC106750.3| Homo sapiens chromosome 5 clone RP11-164A4, compl... 42 1.9
26gb|AY893050.1| Synthetic construct Homo sapiens clone FLH135307.... 42 1.9
27emb|BX647710.1|HSM807856 Homo sapiens mRNA; cDNA DKFZp686B1231 (... 42 1.9
28gb|BC009279.2| Homo sapiens mutated in colorectal cancers, mRNA ... 42 1.9
29ref|NM_175922.3| Homo sapiens hypothetical protein MGC35308 (MGC... 42 1.9
30ref|NM_006301.2| Homo sapiens mitogen-activated protein kinase k... 42 1.9
31emb|BX537952.1|HSM806078 Homo sapiens mRNA; cDNA DKFZp686J1286 (... 42 1.9
32gb|BC018919.2| Homo sapiens mutated in colorectal cancers, mRNA ... 42 1.9
33gb|BC034775.1| Homo sapiens hypothetical protein MGC35308, mRNA ... 42 1.9
34gb|U07358.1|HSU07358 Human protein kinase (zpk) mRNA, complete cds 42 1.9
35gb|M62397.1|HUMCRCMUT Human colorectal mutant cancer protein mRN... 42 1.9
36gb|AC130604.4| Oryza sativa (japonica cultivar-group) chromosome... 40 7.6
37gb|AC147706.3| Felis catus clone RP86-363G23, complete sequence 40 7.6
38gb|AY566805.1| Zostera noltii clone ZnF11 microsatellite sequence 40 7.6
39gb|AC008139.9| Drosophila melanogaster clone BACR28B01, complete... 40 7.6
40gb|AC132490.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.6
41ref|XM_755756.1| Ustilago maydis 521 hypothetical protein (UM047... 40 7.6
42ref|XM_757303.1| Ustilago maydis 521 hypothetical protein (UM062... 40 7.6
43emb|BX004881.17| Zebrafish DNA sequence from clone CH211-141M16 ... 40 7.6
44gb|BT010033.1| Drosophila melanogaster LP05937 full insert cDNA 40 7.6
45emb|BX027377.1|CNS08TAD Single read from an extremity of a full-... 40 7.6
46emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genom... 40 7.6
47emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete ... 40 7.6
48ref|NM_206469.1| Drosophila melanogaster CG11870-RD, transcript ... 40 7.6
49ref|NM_169337.2| Drosophila melanogaster CG11870-RB, transcript ... 40 7.6
50gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 7.6
51dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
52dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
53dbj|AP005819.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
54emb|CR556724.7| Zebrafish DNA sequence from clone DKEYP-34A8 in ... 40 7.6
55dbj|AK061379.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
56gb|AE003686.4| Drosophila melanogaster chromosome 3R, section 24... 40 7.6
57gb|AC130720.3| Mus musculus BAC clone RP24-292B4 from chromosome... 40 7.6
58dbj|AP004547.1| Lotus japonicus genomic DNA, chromosome 6, clone... 40 7.6
59gb|AC170917.2| Mus musculus BAC clone RP23-160F6 from chromosome... 40 7.6 
>ref|XM_493854.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2925

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 85/101 (84%)
 Strand = Plus / Plus

                                                                       
Query: 456 tccgctgggagaagttcctgccggtcaagacactaagggtcttgctagtggagaacgatg 515
           |||| ||||||| |||||| || || |||||||| ||||||||||| |||||||| ||||
Sbjct: 209 tccggtgggagaggttcctccctgtgaagacactgagggtcttgctggtggagaatgatg 268

                                                    
Query: 516 actgtacccgacatgttgtccgtgctctgctccgtaagtgt 556
           ||| |||||| || || ||| | || ||||| |||||||||
Sbjct: 269 actctacccgtcaggtggtcagcgcactgcttcgtaagtgt 309
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                           
Query: 456     tccgctgggagaagttcctgccggtcaagacactaagggtcttgctagtggagaacgatg 515
               |||| ||||||| |||||| || || |||||||| ||||||||||| |||||||| ||||
Sbjct: 9739496 tccggtgggagaggttcctccctgtgaagacactgagggtcttgctggtggagaatgatg 9739437

                                                        
Query: 516     actgtacccgacatgttgtccgtgctctgctccgtaagtgt 556
               ||| |||||| || || ||| | || ||||| |||||||||
Sbjct: 9739436 actctacccgtcaggtggtcagcgcactgcttcgtaagtgt 9739396
to top
>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete
              sequence
          Length = 165113

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                          
Query: 456    tccgctgggagaagttcctgccggtcaagacactaagggtcttgctagtggagaacgatg 515
              |||| ||||||| |||||| || || |||||||| ||||||||||| |||||||| ||||
Sbjct: 160395 tccggtgggagaggttcctccctgtgaagacactgagggtcttgctggtggagaatgatg 160336

                                                       
Query: 516    actgtacccgacatgttgtccgtgctctgctccgtaagtgt 556
              ||| |||||| || || ||| | || ||||| |||||||||
Sbjct: 160335 actctacccgtcaggtggtcagcgcactgcttcgtaagtgt 160295
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                           
Query: 456     tccgctgggagaagttcctgccggtcaagacactaagggtcttgctagtggagaacgatg 515
               |||| ||||||| |||||| || || |||||||| ||||||||||| |||||||| ||||
Sbjct: 9737617 tccggtgggagaggttcctccctgtgaagacactgagggtcttgctggtggagaatgatg 9737558

                                                        
Query: 516     actgtacccgacatgttgtccgtgctctgctccgtaagtgt 556
               ||| |||||| || || ||| | || ||||| |||||||||
Sbjct: 9737557 actctacccgtcaggtggtcagcgcactgcttcgtaagtgt 9737517
to top
>dbj|AB189043.1| Oryza sativa (indica cultivar-group) OsPRR73 mRNA for
           pseudo-response regulator 73, complete cds
          Length = 2304

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 85/101 (84%)
 Strand = Plus / Plus

                                                                       
Query: 456 tccgctgggagaagttcctgccggtcaagacactaagggtcttgctagtggagaacgatg 515
           |||| ||||||| |||||| || || |||||||| ||||||||||| |||||||| ||||
Sbjct: 209 tccggtgggagaggttcctccctgtgaagacactgagggtcttgctggtggagaatgatg 268

                                                    
Query: 516 actgtacccgacatgttgtccgtgctctgctccgtaagtgt 556
           ||| |||||| || || ||| | || ||||| |||||||||
Sbjct: 269 actctacccgtcaggtggtcagcgcactgcttcgtaagtgt 309
to top
>dbj|AB189040.1| Oryza sativa (japonica cultivar-group) OsPRR73 mRNA for
           pseudo-response regulator 73, complete cds
          Length = 2304

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 85/101 (84%)
 Strand = Plus / Plus

                                                                       
Query: 456 tccgctgggagaagttcctgccggtcaagacactaagggtcttgctagtggagaacgatg 515
           |||| ||||||| |||||| || || |||||||| ||||||||||| |||||||| ||||
Sbjct: 209 tccggtgggagaggttcctccctgtgaagacactgagggtcttgctggtggagaatgatg 268

                                                    
Query: 516 actgtacccgacatgttgtccgtgctctgctccgtaagtgt 556
           ||| |||||| || || ||| | || ||||| |||||||||
Sbjct: 269 actctacccgtcaggtggtcagcgcactgcttcgtaagtgt 309
to top
>dbj|AK121136.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077E22, full
           insert sequence
          Length = 3875

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 85/101 (84%)
 Strand = Plus / Plus

                                                                       
Query: 456 tccgctgggagaagttcctgccggtcaagacactaagggtcttgctagtggagaacgatg 515
           |||| ||||||| |||||| || || |||||||| ||||||||||| |||||||| ||||
Sbjct: 897 tccggtgggagaggttcctccctgtgaagacactgagggtcttgctggtggagaatgatg 956

                                                    
Query: 516 actgtacccgacatgttgtccgtgctctgctccgtaagtgt 556
           ||| |||||| || || ||| | || ||||| |||||||||
Sbjct: 957 actctacccgtcaggtggtcagcgcactgcttcgtaagtgt 997
to top
>gb|AF320254.1|AF320254 Azoarcus evansii aerobic 2-aminobenzoate metabolism type II operon,
            complete sequence
          Length = 11010

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 110  ccgccaccgcccgcccctcgacc 132
            |||||||||||||||||||||||
Sbjct: 6366 ccgccaccgcccgcccctcgacc 6388
to top
>ref|XM_364934.1| Magnaporthe grisea 70-15 hypothetical protein (MG09779.4) partial
           mRNA
          Length = 1422

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 424 cgagcacaagcagcagcagcaa 445
           ||||||||||||||||||||||
Sbjct: 656 cgagcacaagcagcagcagcaa 677
to top
>ref|XM_509099.1| PREDICTED: Pan troglodytes similar to mitogen-activated protein
           kinase kinase kinase 12; leucine zipper protein kinase;
           zipper protein kinase; protein kinase MUK; dual leucine
           zipper kinase DLK (LOC451940), mRNA
          Length = 3042

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 425 gagcacaagcagcagcagcaagacc 449
           |||||||||||||||||| ||||||
Sbjct: 424 gagcacaagcagcagcaggaagacc 448
to top
>ref|XM_517879.1| PREDICTED: Pan troglodytes similar to Colorectal mutant cancer
           protein (MCC protein) (LOC462002), mRNA
          Length = 3485

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 425 gagcacaagcagcagcagcaa 445
           |||||||||||||||||||||
Sbjct: 186 gagcacaagcagcagcagcaa 206
to top
>ref|XM_581714.2| PREDICTED: Bos taurus similar to mitogen-activated protein kinase
           kinase kinase 12, transcript variant 1 (LOC505427), mRNA
          Length = 3225

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 425 gagcacaagcagcagcagcaagacc 449
           |||||||||||||||||| ||||||
Sbjct: 325 gagcacaagcagcagcaggaagacc 349
to top
>ref|XM_866211.1| PREDICTED: Bos taurus similar to mitogen-activated protein kinase
           kinase kinase 12, transcript variant 2 (LOC505427), mRNA
          Length = 3357

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 425 gagcacaagcagcagcagcaagacc 449
           |||||||||||||||||| ||||||
Sbjct: 457 gagcacaagcagcagcaggaagacc 481
to top
>ref|NM_002387.1| Homo sapiens mutated in colorectal cancers (MCC), mRNA
          Length = 4181

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 425  gagcacaagcagcagcagcaa 445
            |||||||||||||||||||||
Sbjct: 1156 gagcacaagcagcagcagcaa 1176
to top
>ref|XM_852089.1| PREDICTED: Canis familiaris similar to Mitogen-activated protein
           kinase kinase kinase 12 (Mixed lineage kinase)
           (Leucine-zipper protein kinase) (ZPK) (Dual leucine
           zipper bearing kinase) (DLK) (MAPK-upstream kinase)
           (MUK), transcript variant 3 (LOC607170), mRNA
          Length = 2583

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 425 gagcacaagcagcagcagcaagacc 449
           |||||||||||||||||| ||||||
Sbjct: 325 gagcacaagcagcagcaggaagacc 349
to top
>ref|XM_843722.1| PREDICTED: Canis familiaris similar to Mitogen-activated protein
           kinase kinase kinase 12 (Mixed lineage kinase)
           (Leucine-zipper protein kinase) (ZPK) (Dual leucine
           zipper bearing kinase) (DLK) (MAPK-upstream kinase)
           (MUK), transcript variant 2 (LOC607170), mRNA
          Length = 2682

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 425 gagcacaagcagcagcagcaagacc 449
           |||||||||||||||||| ||||||
Sbjct: 424 gagcacaagcagcagcaggaagacc 448
to top
>emb|AL121956.21|HSDJ655C5 Human DNA sequence from clone RP4-655C5 on chromosome 6 Contains a
             pseudogene similar to heterogeneous nuclear
             ribonuclearprotein A, novel protein similar to RIKEN cDNA
             5630401J11 (pRGR1) (MGC19825), a guanine nucleotide
             binding protein (G protein), gamma 5 pseudogene (GCG5), a
             novel gene and 3 CpG islands, complete sequence
          Length = 119733

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 102   cgcccatgccgccaccgcccgcccc 126
             ||||||||||||| |||||||||||
Sbjct: 32181 cgcccatgccgccgccgcccgcccc 32205
to top
>gb|BC037585.1| Homo sapiens, clone IMAGE:5532846, mRNA
          Length = 1623

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 425  gagcacaagcagcagcagcaagacc 449
            |||||||||||||||||| ||||||
Sbjct: 1151 gagcacaagcagcagcaggaagacc 1127
to top
>gb|BC050050.1| Homo sapiens mitogen-activated protein kinase kinase kinase 12,
           mRNA (cDNA clone MGC:42552 IMAGE:4824512), complete cds
          Length = 2536

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 425 gagcacaagcagcagcagcaagacc 449
           |||||||||||||||||| ||||||
Sbjct: 696 gagcacaagcagcagcaggaagacc 720
to top
>emb|CR858343.1| Pongo pygmaeus mRNA; cDNA DKFZp459K2433 (from clone DKFZp459K2433)
          Length = 2977

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 425 gagcacaagcagcagcagcaagacc 449
           |||||||||||||||||| ||||||
Sbjct: 645 gagcacaagcagcagcaggaagacc 669
to top
>emb|CR857069.1| Pongo pygmaeus mRNA; cDNA DKFZp469F0810 (from clone DKFZp469F0810)
          Length = 4748

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 425  gagcacaagcagcagcagcaa 445
            |||||||||||||||||||||
Sbjct: 1120 gagcacaagcagcagcagcaa 1140
to top
>dbj|AK128596.1| Homo sapiens cDNA FLJ46755 fis, clone TRACH3023373, highly  similar
            to Colorectal mutant cancer protein
          Length = 3334

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 425  gagcacaagcagcagcagcaa 445
            |||||||||||||||||||||
Sbjct: 1934 gagcacaagcagcagcagcaa 1954
to top
>dbj|AK094195.1| Homo sapiens cDNA FLJ36876 fis, clone ASTRO2019171, highly similar
           to Mitogen-activated protein kinase kinase kinase 12
          Length = 2807

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 425 gagcacaagcagcagcagcaagacc 449
           |||||||||||||||||| ||||||
Sbjct: 491 gagcacaagcagcagcaggaagacc 515
to top
>dbj|AK096212.1| Homo sapiens cDNA FLJ38893 fis, clone NOVAR1000091, highly similar to
            COLORECTAL MUTANT CANCER PROTEIN
          Length = 1587

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 425  gagcacaagcagcagcagcaa 445
            |||||||||||||||||||||
Sbjct: 1068 gagcacaagcagcagcagcaa 1088
to top
>gb|AC106750.3| Homo sapiens chromosome 5 clone RP11-164A4, complete sequence
          Length = 101224

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 425   gagcacaagcagcagcagcaa 445
             |||||||||||||||||||||
Sbjct: 51173 gagcacaagcagcagcagcaa 51153
to top
>gb|AY893050.1| Synthetic construct Homo sapiens clone FLH135307.01L mutated in
           colorectal cancers (MCC) mRNA, partial cds
          Length = 2490

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 425 gagcacaagcagcagcagcaa 445
           |||||||||||||||||||||
Sbjct: 936 gagcacaagcagcagcagcaa 956
to top
>emb|BX647710.1|HSM807856 Homo sapiens mRNA; cDNA DKFZp686B1231 (from clone DKFZp686B1231)
          Length = 5880

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 425  gagcacaagcagcagcagcaa 445
            |||||||||||||||||||||
Sbjct: 1396 gagcacaagcagcagcagcaa 1416
to top
>gb|BC009279.2| Homo sapiens mutated in colorectal cancers, mRNA (cDNA clone
            MGC:12731 IMAGE:4111706), complete cds
          Length = 3431

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 425  gagcacaagcagcagcagcaa 445
            |||||||||||||||||||||
Sbjct: 1466 gagcacaagcagcagcagcaa 1486
to top
>ref|NM_175922.3| Homo sapiens hypothetical protein MGC35308 (MGC35308), mRNA
          Length = 2704

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 102 cgcccatgccgccaccgcccgcccc 126
           ||||||||||||| |||||||||||
Sbjct: 252 cgcccatgccgccgccgcccgcccc 276
to top
>ref|NM_006301.2| Homo sapiens mitogen-activated protein kinase kinase kinase 12
           (MAP3K12), mRNA
          Length = 3365

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 425 gagcacaagcagcagcagcaagacc 449
           |||||||||||||||||| ||||||
Sbjct: 423 gagcacaagcagcagcaggaagacc 447
to top
>emb|BX537952.1|HSM806078 Homo sapiens mRNA; cDNA DKFZp686J1286 (from clone DKFZp686J1286)
          Length = 7707

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 425 gagcacaagcagcagcagcaa 445
           |||||||||||||||||||||
Sbjct: 937 gagcacaagcagcagcagcaa 957
to top
>gb|BC018919.2| Homo sapiens mutated in colorectal cancers, mRNA (cDNA clone
            MGC:12732 IMAGE:4131685), complete cds
          Length = 3484

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 425  gagcacaagcagcagcagcaa 445
            |||||||||||||||||||||
Sbjct: 1466 gagcacaagcagcagcagcaa 1486
to top
>gb|BC034775.1| Homo sapiens hypothetical protein MGC35308, mRNA (cDNA clone
           MGC:35308 IMAGE:5177440), complete cds
          Length = 2174

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 102 cgcccatgccgccaccgcccgcccc 126
           ||||||||||||| |||||||||||
Sbjct: 252 cgcccatgccgccgccgcccgcccc 276
to top
>gb|U07358.1|HSU07358 Human protein kinase (zpk) mRNA, complete cds
          Length = 3365

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 425 gagcacaagcagcagcagcaagacc 449
           |||||||||||||||||| ||||||
Sbjct: 423 gagcacaagcagcagcaggaagacc 447
to top
>gb|M62397.1|HUMCRCMUT Human colorectal mutant cancer protein mRNA, complete cds
          Length = 4181

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 425  gagcacaagcagcagcagcaa 445
            |||||||||||||||||||||
Sbjct: 1156 gagcacaagcagcagcagcaa 1176
to top
>gb|AC130604.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1155G07,
             complete sequence
          Length = 146712

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 426   agcacaagcagcagcagcaa 445
             ||||||||||||||||||||
Sbjct: 94984 agcacaagcagcagcagcaa 94965
to top
>gb|AC147706.3| Felis catus clone RP86-363G23, complete sequence
          Length = 142721

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   cagcaaggaagaggactggc 392
             ||||||||||||||||||||
Sbjct: 23630 cagcaaggaagaggactggc 23611
to top
>gb|AY566805.1| Zostera noltii clone ZnF11 microsatellite sequence
          Length = 274

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 425 gagcacaagcagcagcagca 444
           ||||||||||||||||||||
Sbjct: 203 gagcacaagcagcagcagca 184
to top
>gb|AC008139.9| Drosophila melanogaster clone BACR28B01, complete sequence
          Length = 170675

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 426    agcacaagcagcagcagcaa 445
              ||||||||||||||||||||
Sbjct: 135870 agcacaagcagcagcagcaa 135889
to top
>gb|AC132490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0570A02,
              complete sequence
          Length = 146541

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 368    ggcggcagcaaggaagagga 387
              ||||||||||||||||||||
Sbjct: 119037 ggcggcagcaaggaagagga 119018
to top
>ref|XM_755756.1| Ustilago maydis 521 hypothetical protein (UM04702.1) partial mRNA
          Length = 855

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 425 gagcacaagcagcagcagca 444
           ||||||||||||||||||||
Sbjct: 668 gagcacaagcagcagcagca 687
to top
>ref|XM_757303.1| Ustilago maydis 521 hypothetical protein (UM06249.1) partial mRNA
          Length = 6600

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 426  agcacaagcagcagcagcaa 445
            ||||||||||||||||||||
Sbjct: 4635 agcacaagcagcagcagcaa 4616
to top
>emb|BX004881.17| Zebrafish DNA sequence from clone CH211-141M16 in linkage group 13,
             complete sequence
          Length = 189908

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 421   ggacgagcacaagcagcagc 440
             ||||||||||||||||||||
Sbjct: 65692 ggacgagcacaagcagcagc 65711
to top
>gb|BT010033.1| Drosophila melanogaster LP05937 full insert cDNA
          Length = 4365

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 426 agcacaagcagcagcagcaa 445
           ||||||||||||||||||||
Sbjct: 464 agcacaagcagcagcagcaa 483
to top
>emb|BX027377.1|CNS08TAD Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA41AA07 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 970

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 426 agcacaagcagcagcagcaa 445
           ||||||||||||||||||||
Sbjct: 232 agcacaagcagcagcagcaa 213
to top
>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16
          Length = 348068

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   cgccaccgcccgcccctcga 130
             ||||||||||||||||||||
Sbjct: 58617 cgccaccgcccgcccctcga 58636
to top
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29
          Length = 321250

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   gccgccaccgcccgcccctc 128
             ||||||||||||||||||||
Sbjct: 15397 gccgccaccgcccgcccctc 15378
to top
>ref|NM_206469.1| Drosophila melanogaster CG11870-RD, transcript variant D (CG11870),
           mRNA
          Length = 4357

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 426 agcacaagcagcagcagcaa 445
           ||||||||||||||||||||
Sbjct: 464 agcacaagcagcagcagcaa 483
to top
>ref|NM_169337.2| Drosophila melanogaster CG11870-RB, transcript variant B (CG11870),
           mRNA
          Length = 5076

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 426 agcacaagcagcagcagcaa 445
           ||||||||||||||||||||
Sbjct: 464 agcacaagcagcagcagcaa 483
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 249     gcgccggtcaagctggcgcggacg 272
               ||||||| ||||||||||||||||
Sbjct: 2430488 gcgccggccaagctggcgcggacg 2430511
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 368      ggcggcagcaaggaagagga 387
                ||||||||||||||||||||
Sbjct: 12163668 ggcggcagcaaggaagagga 12163649
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 426      agcacaagcagcagcagcaa 445
                ||||||||||||||||||||
Sbjct: 25232143 agcacaagcagcagcagcaa 25232124



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 368      ggcggcagcaaggaagagga 387
                ||||||||||||||||||||
Sbjct: 14038960 ggcggcagcaaggaagagga 14038941
to top
>dbj|AP005819.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0063H21
          Length = 188058

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   ggcggcagcaaggaagagga 387
             ||||||||||||||||||||
Sbjct: 37160 ggcggcagcaaggaagagga 37141
to top
>emb|CR556724.7| Zebrafish DNA sequence from clone DKEYP-34A8 in linkage group 13,
             complete sequence
          Length = 42660

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   ggacgagcacaagcagcagc 440
             ||||||||||||||||||||
Sbjct: 17037 ggacgagcacaagcagcagc 17018
to top
>dbj|AK061379.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-G12, full
           insert sequence
          Length = 1181

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 368 ggcggcagcaaggaagagga 387
           ||||||||||||||||||||
Sbjct: 44  ggcggcagcaaggaagagga 25
to top
>gb|AE003686.4| Drosophila melanogaster chromosome 3R, section 24 of 118 of the complete
              sequence
          Length = 223505

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 426    agcacaagcagcagcagcaa 445
              ||||||||||||||||||||
Sbjct: 103406 agcacaagcagcagcagcaa 103425
to top
>gb|AC130720.3| Mus musculus BAC clone RP24-292B4 from chromosome 1, complete sequence
          Length = 176143

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 371   ggcagcaaggaagaggactg 390
             ||||||||||||||||||||
Sbjct: 57746 ggcagcaaggaagaggactg 57727
to top
>dbj|AP004547.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT31L24, TM0228a,
             complete sequence
          Length = 65103

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   tcggaaacggcgccgtagag 319
             ||||||||||||||||||||
Sbjct: 42965 tcggaaacggcgccgtagag 42946
to top
>gb|AC170917.2| Mus musculus BAC clone RP23-160F6 from chromosome 1, complete sequence
          Length = 195784

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 371   ggcagcaaggaagaggactg 390
             ||||||||||||||||||||
Sbjct: 91498 ggcagcaaggaagaggactg 91479


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,943,036
Number of Sequences: 3902068
Number of extensions: 3943036
Number of successful extensions: 104007
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103678
Number of HSP's gapped (non-prelim): 329
length of query: 563
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 540
effective length of database: 17,143,297,704
effective search space: 9257380760160
effective search space used: 9257380760160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top