Clone Name | baalm06 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK109362.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-E06, full insert sequence Length = 1353 Score = 325 bits (164), Expect = 1e-85 Identities = 264/296 (89%), Gaps = 1/296 (0%) Strand = Plus / Plus Query: 1 tactctgtgtcaactaggcattattttgcttttggtgccctagtatctgaggaactctcc 60 ||||| ||||||||| ||||||| |||||||||||||| || |||||||||||||||||| Sbjct: 412 tactcagtgtcaactcggcattactttgcttttggtgctcttgtatctgaggaactctcc 471 Query: 61 tacaaactcaaagnagttgcctaaggtccgttgggttcttcctgattcatacctcgatgt 120 ||||||||||||| ||||||| |||||||| ||||||||||| || ||||| || ||||| Sbjct: 472 tacaaactcaaag-agttgcccaaggtccgctgggttcttccagactcatatctggatgt 530 Query: 121 cagaaataaggactatggaggagaaccatttatagatggacaagctgttccttacgaccc 180 |||||||||||||||||||||||| || |||||| ||||| ||||||||||||| ||||| Sbjct: 531 cagaaataaggactatggaggagagccttttataaatggagaagctgttccttatgaccc 590 Query: 181 caaataccatgaggagtgggtgagaaacaatgcccgtgccaatgagagatcccggcgcaa 240 || ||||||||||||||||||||||||||||| ||||||||||| || |||| ||||| Sbjct: 591 taagtaccatgaggagtgggtgagaaacaatgcacgtgccaatgaaaggacccgacgcaa 650 Query: 241 cgacaggcctcgcaactttgacaggtcgaggaactttgaaaggagaagggagaaca 296 || |||||| | |||||||||||||| ||||| || || |||||||||||||||| Sbjct: 651 tgataggcctagaaactttgacaggtcaaggaatttcgagaggagaagggagaaca 706
>dbj|AK072233.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001H21, full insert sequence Length = 1435 Score = 325 bits (164), Expect = 1e-85 Identities = 264/296 (89%), Gaps = 1/296 (0%) Strand = Plus / Plus Query: 1 tactctgtgtcaactaggcattattttgcttttggtgccctagtatctgaggaactctcc 60 ||||| ||||||||| ||||||| |||||||||||||| || |||||||||||||||||| Sbjct: 410 tactcagtgtcaactcggcattactttgcttttggtgctcttgtatctgaggaactctcc 469 Query: 61 tacaaactcaaagnagttgcctaaggtccgttgggttcttcctgattcatacctcgatgt 120 ||||||||||||| ||||||| |||||||| ||||||||||| || ||||| || ||||| Sbjct: 470 tacaaactcaaag-agttgcccaaggtccgctgggttcttccagactcatatctggatgt 528 Query: 121 cagaaataaggactatggaggagaaccatttatagatggacaagctgttccttacgaccc 180 |||||||||||||||||||||||| || |||||| ||||| ||||||||||||| ||||| Sbjct: 529 cagaaataaggactatggaggagagccttttataaatggagaagctgttccttatgaccc 588 Query: 181 caaataccatgaggagtgggtgagaaacaatgcccgtgccaatgagagatcccggcgcaa 240 || ||||||||||||||||||||||||||||| ||||||||||| || |||| ||||| Sbjct: 589 taagtaccatgaggagtgggtgagaaacaatgcacgtgccaatgaaaggacccgacgcaa 648 Query: 241 cgacaggcctcgcaactttgacaggtcgaggaactttgaaaggagaagggagaaca 296 || |||||| | |||||||||||||| ||||| || || |||||||||||||||| Sbjct: 649 tgataggcctagaaactttgacaggtcaaggaatttcgagaggagaagggagaaca 704
>dbj|AK106007.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-A08, full insert sequence Length = 1437 Score = 317 bits (160), Expect = 2e-83 Identities = 263/296 (88%), Gaps = 1/296 (0%) Strand = Plus / Plus Query: 1 tactctgtgtcaactaggcattattttgcttttggtgccctagtatctgaggaactctcc 60 ||||| ||||||||| ||||||| ||||||||||| || || |||||||||||||||||| Sbjct: 439 tactcagtgtcaactcggcattactttgcttttggagctcttgtatctgaggaactctcc 498 Query: 61 tacaaactcaaagnagttgcctaaggtccgttgggttcttcctgattcatacctcgatgt 120 ||||||||||||| ||||||| |||||||| ||||||||||| || |||||||| ||||| Sbjct: 499 tacaaactcaaag-agttgcccaaggtccgctgggttcttccagactcatacctggatgt 557 Query: 121 cagaaataaggactatggaggagaaccatttatagatggacaagctgttccttacgaccc 180 ||||||||||||||| ||||||||||| |||||| |||| |||| |||||||| ||||| Sbjct: 558 cagaaataaggactacggaggagaaccttttataaatggggaagccgttccttatgaccc 617 Query: 181 caaataccatgaggagtgggtgagaaacaatgcccgtgccaatgagagatcccggcgcaa 240 || ||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||||| Sbjct: 618 taagtaccacgaggagtgggtgagaaacaatgcgcgtgccaatgaaagaagccggcgcaa 677 Query: 241 cgacaggcctcgcaactttgacaggtcgaggaactttgaaaggagaagggagaaca 296 || |||||| | |||||||||||||| ||||| ||||| |||||||||||||||| Sbjct: 678 tgataggcctagaaactttgacaggtcaaggaattttgagaggagaagggagaaca 733
>dbj|AK098936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036D20, full insert sequence Length = 1435 Score = 317 bits (160), Expect = 2e-83 Identities = 263/296 (88%), Gaps = 1/296 (0%) Strand = Plus / Plus Query: 1 tactctgtgtcaactaggcattattttgcttttggtgccctagtatctgaggaactctcc 60 ||||| ||||||||| ||||||| |||||||||||||| || |||||||||||||||||| Sbjct: 410 tactcagtgtcaactcggcattactttgcttttggtgctcttgtatctgaggaactctcc 469 Query: 61 tacaaactcaaagnagttgcctaaggtccgttgggttcttcctgattcatacctcgatgt 120 ||||||||||||| ||||||| |||||||| ||||||||||| || || || || ||||| Sbjct: 470 tacaaactcaaag-agttgcccaaggtccgctgggttcttccagactcgtatctggatgt 528 Query: 121 cagaaataaggactatggaggagaaccatttatagatggacaagctgttccttacgaccc 180 |||||||||||||||||||||||| || |||||| ||||| ||||||||||||| ||||| Sbjct: 529 cagaaataaggactatggaggagagccttttataaatggagaagctgttccttatgaccc 588 Query: 181 caaataccatgaggagtgggtgagaaacaatgcccgtgccaatgagagatcccggcgcaa 240 || ||||||||||||||||||||||||||||| ||||||||||| || |||| ||||| Sbjct: 589 taagtaccatgaggagtgggtgagaaacaatgcacgtgccaatgaaaggacccgacgcaa 648 Query: 241 cgacaggcctcgcaactttgacaggtcgaggaactttgaaaggagaagggagaaca 296 || |||||| | |||||||||||||| ||||| || || |||||||||||||||| Sbjct: 649 tgataggcctagaaactttgacaggtcaaggaatttcgagaggagaagggagaaca 704
>gb|AY104285.1| Zea mays PCO088782 mRNA sequence Length = 1701 Score = 287 bits (145), Expect = 2e-74 Identities = 259/296 (87%), Gaps = 1/296 (0%) Strand = Plus / Plus Query: 1 tactctgtgtcaactaggcattattttgcttttggtgccctagtatctgaggaactctcc 60 |||||||| || ||| | ||||| |||| |||||||| || |||||||||||||| || Sbjct: 471 tactctgtatcgactcgtcattactttggctttggtgctcttgtatctgaggaactttct 530 Query: 61 tacaaactcaaagnagttgcctaaggtccgttgggttcttcctgattcatacctcgatgt 120 |||||||| |||| | || || |||||||| ||||||||||||||||||||| | ||||| Sbjct: 531 tacaaactgaaagaaattccc-aaggtccgctgggttcttcctgattcatacttggatgt 589 Query: 121 cagaaataaggactatggaggagaaccatttatagatggacaagctgttccttacgaccc 180 || ||| |||||||||||||| ||||| || ||| |||| |||||||||||||| || || Sbjct: 590 caaaaacaaggactatggaggcgaacccttcataaatgggcaagctgttccttatgatcc 649 Query: 181 caaataccatgaggagtgggtgagaaacaatgcccgtgccaatgagagatcccggcgcaa 240 ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct: 650 taaatatcatgaggagtgggtgagaaacaatgcccgtgccaatgacagaaaccggcgcaa 709 Query: 241 cgacaggcctcgcaactttgacaggtcgaggaactttgaaaggagaagggagaaca 296 || ||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct: 710 tgataggcctcgcaactttgacaggtcaaggaactttgacaggagaagggagaaca 765
>gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0094K23, complete sequence Length = 167482 Score = 155 bits (78), Expect = 2e-34 Identities = 138/158 (87%) Strand = Plus / Minus Query: 139 aggagaaccatttatagatggacaagctgttccttacgaccccaaataccatgaggagtg 198 ||||||||| |||||| |||| |||| |||||||| ||||| || ||||| |||||||| Sbjct: 38399 aggagaaccttttataaatggggaagccgttccttatgaccctaagtaccacgaggagtg 38340 Query: 199 ggtgagaaacaatgcccgtgccaatgagagatcccggcgcaacgacaggcctcgcaactt 258 ||||||||||||||| ||||||||||| ||| ||||||||| || |||||| | ||||| Sbjct: 38339 ggtgagaaacaatgcgcgtgccaatgaaagaagccggcgcaatgataggcctagaaactt 38280 Query: 259 tgacaggtcgaggaactttgaaaggagaagggagaaca 296 ||||||||| ||||| ||||| |||||||||||||||| Sbjct: 38279 tgacaggtcaaggaattttgagaggagaagggagaaca 38242 Score = 97.6 bits (49), Expect = 4e-17 Identities = 67/73 (91%) Strand = Plus / Minus Query: 1 tactctgtgtcaactaggcattattttgcttttggtgccctagtatctgaggaactctcc 60 ||||| ||||||||| ||||||| ||||||||||| || || |||||||||||||||||| Sbjct: 39414 tactcagtgtcaactcggcattactttgcttttggagctcttgtatctgaggaactctcc 39355 Query: 61 tacaaactcaaag 73 ||||||||||||| Sbjct: 39354 tacaaactcaaag 39342 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 75 agttgcctaaggtccgttgggttcttcctgattcatacctcgatgtcagaaataaggact 134 ||||||| |||||||| ||||||||||| || |||||||| ||||||||||||||||||| Sbjct: 39246 agttgcccaaggtccgctgggttcttccagactcatacctggatgtcagaaataaggact 39187 Query: 135 atggagg 141 | ||||| Sbjct: 39186 acggagg 39180
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 155 bits (78), Expect = 2e-34 Identities = 138/158 (87%) Strand = Plus / Minus Query: 139 aggagaaccatttatagatggacaagctgttccttacgaccccaaataccatgaggagtg 198 ||||||||| |||||| |||| |||| |||||||| ||||| || ||||| |||||||| Sbjct: 19442992 aggagaaccttttataaatggggaagccgttccttatgaccctaagtaccacgaggagtg 19442933 Query: 199 ggtgagaaacaatgcccgtgccaatgagagatcccggcgcaacgacaggcctcgcaactt 258 ||||||||||||||| ||||||||||| ||| ||||||||| || |||||| | ||||| Sbjct: 19442932 ggtgagaaacaatgcgcgtgccaatgaaagaagccggcgcaatgataggcctagaaactt 19442873 Query: 259 tgacaggtcgaggaactttgaaaggagaagggagaaca 296 ||||||||| ||||| ||||| |||||||||||||||| Sbjct: 19442872 tgacaggtcaaggaattttgagaggagaagggagaaca 19442835 Score = 155 bits (78), Expect = 2e-34 Identities = 138/158 (87%) Strand = Plus / Minus Query: 139 aggagaaccatttatagatggacaagctgttccttacgaccccaaataccatgaggagtg 198 |||||| || |||||| ||||| ||||||||||||| ||||| || |||||||||||||| Sbjct: 2437444 aggagagccttttataaatggagaagctgttccttatgaccctaagtaccatgaggagtg 2437385 Query: 199 ggtgagaaacaatgcccgtgccaatgagagatcccggcgcaacgacaggcctcgcaactt 258 ||||||||||||||| ||||||||||| || |||| ||||| || |||||| | ||||| Sbjct: 2437384 ggtgagaaacaatgcacgtgccaatgaaaggacccgacgcaatgataggcctagaaactt 2437325 Query: 259 tgacaggtcgaggaactttgaaaggagaagggagaaca 296 ||||||||| ||||| || || |||||||||||||||| Sbjct: 2437324 tgacaggtcaaggaatttcgagaggagaagggagaaca 2437287 Score = 105 bits (53), Expect = 2e-19 Identities = 68/73 (93%) Strand = Plus / Minus Query: 1 tactctgtgtcaactaggcattattttgcttttggtgccctagtatctgaggaactctcc 60 ||||| ||||||||| ||||||| |||||||||||||| || |||||||||||||||||| Sbjct: 2438390 tactcagtgtcaactcggcattactttgcttttggtgctcttgtatctgaggaactctcc 2438331 Query: 61 tacaaactcaaag 73 ||||||||||||| Sbjct: 2438330 tacaaactcaaag 2438318 Score = 97.6 bits (49), Expect = 4e-17 Identities = 67/73 (91%) Strand = Plus / Minus Query: 1 tactctgtgtcaactaggcattattttgcttttggtgccctagtatctgaggaactctcc 60 ||||| ||||||||| ||||||| ||||||||||| || || |||||||||||||||||| Sbjct: 19444007 tactcagtgtcaactcggcattactttgcttttggagctcttgtatctgaggaactctcc 19443948 Query: 61 tacaaactcaaag 73 ||||||||||||| Sbjct: 19443947 tacaaactcaaag 19443935 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 75 agttgcctaaggtccgttgggttcttcctgattcatacctcgatgtcagaaataaggact 134 ||||||| |||||||| ||||||||||| || |||||||| ||||||||||||||||||| Sbjct: 19443839 agttgcccaaggtccgctgggttcttccagactcatacctggatgtcagaaataaggact 19443780 Query: 135 atggagg 141 | ||||| Sbjct: 19443779 acggagg 19443773 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 75 agttgcctaaggtccgttgggttcttcctgattcatacctcgatgtcagaaataaggact 134 ||||||| |||||||| ||||||||||| || ||||| || ||||||||||||||||||| Sbjct: 2438224 agttgcccaaggtccgctgggttcttccagactcatatctggatgtcagaaataaggact 2438165 Query: 135 atggagg 141 ||||||| Sbjct: 2438164 atggagg 2438158
>dbj|AP005894.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0095O23 Length = 159792 Score = 155 bits (78), Expect = 2e-34 Identities = 138/158 (87%) Strand = Plus / Minus Query: 139 aggagaaccatttatagatggacaagctgttccttacgaccccaaataccatgaggagtg 198 |||||| || |||||| ||||| ||||||||||||| ||||| || |||||||||||||| Sbjct: 115854 aggagagccttttataaatggagaagctgttccttatgaccctaagtaccatgaggagtg 115795 Query: 199 ggtgagaaacaatgcccgtgccaatgagagatcccggcgcaacgacaggcctcgcaactt 258 ||||||||||||||| ||||||||||| || |||| ||||| || |||||| | ||||| Sbjct: 115794 ggtgagaaacaatgcacgtgccaatgaaaggacccgacgcaatgataggcctagaaactt 115735 Query: 259 tgacaggtcgaggaactttgaaaggagaagggagaaca 296 ||||||||| ||||| || || |||||||||||||||| Sbjct: 115734 tgacaggtcaaggaatttcgagaggagaagggagaaca 115697 Score = 105 bits (53), Expect = 2e-19 Identities = 68/73 (93%) Strand = Plus / Minus Query: 1 tactctgtgtcaactaggcattattttgcttttggtgccctagtatctgaggaactctcc 60 ||||| ||||||||| ||||||| |||||||||||||| || |||||||||||||||||| Sbjct: 116800 tactcagtgtcaactcggcattactttgcttttggtgctcttgtatctgaggaactctcc 116741 Query: 61 tacaaactcaaag 73 ||||||||||||| Sbjct: 116740 tacaaactcaaag 116728 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 75 agttgcctaaggtccgttgggttcttcctgattcatacctcgatgtcagaaataaggact 134 ||||||| |||||||| ||||||||||| || ||||| || ||||||||||||||||||| Sbjct: 116634 agttgcccaaggtccgctgggttcttccagactcatatctggatgtcagaaataaggact 116575 Query: 135 atggagg 141 ||||||| Sbjct: 116574 atggagg 116568
>dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0406E03 Length = 201069 Score = 155 bits (78), Expect = 2e-34 Identities = 138/158 (87%) Strand = Plus / Minus Query: 139 aggagaaccatttatagatggacaagctgttccttacgaccccaaataccatgaggagtg 198 |||||| || |||||| ||||| ||||||||||||| ||||| || |||||||||||||| Sbjct: 24034 aggagagccttttataaatggagaagctgttccttatgaccctaagtaccatgaggagtg 23975 Query: 199 ggtgagaaacaatgcccgtgccaatgagagatcccggcgcaacgacaggcctcgcaactt 258 ||||||||||||||| ||||||||||| || |||| ||||| || |||||| | ||||| Sbjct: 23974 ggtgagaaacaatgcacgtgccaatgaaaggacccgacgcaatgataggcctagaaactt 23915 Query: 259 tgacaggtcgaggaactttgaaaggagaagggagaaca 296 ||||||||| ||||| || || |||||||||||||||| Sbjct: 23914 tgacaggtcaaggaatttcgagaggagaagggagaaca 23877 Score = 105 bits (53), Expect = 2e-19 Identities = 68/73 (93%) Strand = Plus / Minus Query: 1 tactctgtgtcaactaggcattattttgcttttggtgccctagtatctgaggaactctcc 60 ||||| ||||||||| ||||||| |||||||||||||| || |||||||||||||||||| Sbjct: 24980 tactcagtgtcaactcggcattactttgcttttggtgctcttgtatctgaggaactctcc 24921 Query: 61 tacaaactcaaag 73 ||||||||||||| Sbjct: 24920 tacaaactcaaag 24908 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 75 agttgcctaaggtccgttgggttcttcctgattcatacctcgatgtcagaaataaggact 134 ||||||| |||||||| ||||||||||| || ||||| || ||||||||||||||||||| Sbjct: 24814 agttgcccaaggtccgctgggttcttccagactcatatctggatgtcagaaataaggact 24755 Query: 135 atggagg 141 ||||||| Sbjct: 24754 atggagg 24748
>ref|NM_104204.2| Arabidopsis thaliana unknown protein AT1G53260 mRNA, complete cds Length = 1408 Score = 77.8 bits (39), Expect = 4e-11 Identities = 114/139 (82%) Strand = Plus / Plus Query: 75 agttgcctaaggtccgttgggttcttcctgattcatacctcgatgtcagaaataaggact 134 ||||||||||||| ||||||||||||||||| ||| | |||| | ||||| |||| Sbjct: 549 agttgcctaaggttaagtgggttcttcctgattcctacttggatgggaagaataaagact 608 Query: 135 atggaggagaaccatttatagatggacaagctgttccttacgaccccaaataccatgagg 194 ||||||||||||| || || |||||| | ||||||||||| ||||| || || ||||| | Sbjct: 609 atggaggagaacctttcattgatggaaaggctgttccttatgacccaaagtatcatgaag 668 Query: 195 agtgggtgagaaacaatgc 213 | ||| | ||||||||||| Sbjct: 669 aatggataagaaacaatgc 687
>gb|AY735538.1| Arabidopsis thaliana chromosome 1 hypothetical protein AT1G53260 mRNA, complete cds, alternatively spliced Length = 1335 Score = 77.8 bits (39), Expect = 4e-11 Identities = 114/139 (82%) Strand = Plus / Plus Query: 75 agttgcctaaggtccgttgggttcttcctgattcatacctcgatgtcagaaataaggact 134 ||||||||||||| ||||||||||||||||| ||| | |||| | ||||| |||| Sbjct: 548 agttgcctaaggttaagtgggttcttcctgattcctacttggatgggaagaataaagact 607 Query: 135 atggaggagaaccatttatagatggacaagctgttccttacgaccccaaataccatgagg 194 ||||||||||||| || || |||||| | ||||||||||| ||||| || || ||||| | Sbjct: 608 atggaggagaacctttcattgatggaaaggctgttccttatgacccaaagtatcatgaag 667 Query: 195 agtgggtgagaaacaatgc 213 | ||| | ||||||||||| Sbjct: 668 aatggataagaaacaatgc 686
>gb|AY735537.1| Arabidopsis thaliana chromosome 1 hypothetical protein AT1G53260 mRNA, complete cds, alternatively spliced Length = 1447 Score = 77.8 bits (39), Expect = 4e-11 Identities = 114/139 (82%) Strand = Plus / Plus Query: 75 agttgcctaaggtccgttgggttcttcctgattcatacctcgatgtcagaaataaggact 134 ||||||||||||| ||||||||||||||||| ||| | |||| | ||||| |||| Sbjct: 549 agttgcctaaggttaagtgggttcttcctgattcctacttggatgggaagaataaagact 608 Query: 135 atggaggagaaccatttatagatggacaagctgttccttacgaccccaaataccatgagg 194 ||||||||||||| || || |||||| | ||||||||||| ||||| || || ||||| | Sbjct: 609 atggaggagaacctttcattgatggaaaggctgttccttatgacccaaagtatcatgaag 668 Query: 195 agtgggtgagaaacaatgc 213 | ||| | ||||||||||| Sbjct: 669 aatggataagaaacaatgc 687
>gb|AY954765.1| Arabidopsis thaliana hypothetical protein (At1g53260) mRNA, complete cds Length = 816 Score = 77.8 bits (39), Expect = 4e-11 Identities = 114/139 (82%) Strand = Plus / Plus Query: 75 agttgcctaaggtccgttgggttcttcctgattcatacctcgatgtcagaaataaggact 134 ||||||||||||| ||||||||||||||||| ||| | |||| | ||||| |||| Sbjct: 83 agttgcctaaggttaagtgggttcttcctgattcctacttggatgggaagaataaagact 142 Query: 135 atggaggagaaccatttatagatggacaagctgttccttacgaccccaaataccatgagg 194 ||||||||||||| || || |||||| | ||||||||||| ||||| || || ||||| | Sbjct: 143 atggaggagaacctttcattgatggaaaggctgttccttatgacccaaagtatcatgaag 202 Query: 195 agtgggtgagaaacaatgc 213 | ||| | ||||||||||| Sbjct: 203 aatggataagaaacaatgc 221
>ref|NM_112362.2| Arabidopsis thaliana unknown protein AT3G15000 mRNA, complete cds Length = 1556 Score = 67.9 bits (34), Expect = 4e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 92 tgggttcttcctgattcatacctcgatgtcagaaataaggactatggaggagaaccattt 151 |||||||||||||| || ||||| ||||| || || || ||||||||||| ||||| || Sbjct: 562 tgggttcttcctgactcttacctggatgtgaggaacaaagactatggaggggaacctttc 621 Query: 152 atagatggacaagctgttccttacgaccccaaataccatgaggagtgggtgagaaacaat 211 || ||||| | ||||||||||| || || || ||||| ||||||||| | || |||||| Sbjct: 622 atcgatgggaaggctgttccttatgatcctaagtaccacgaggagtggataaggaacaat 681 Query: 212 gc 213 || Sbjct: 682 gc 683
>gb|BT015868.1| Arabidopsis thaliana At3g15000 mRNA, complete cds Length = 1188 Score = 67.9 bits (34), Expect = 4e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 92 tgggttcttcctgattcatacctcgatgtcagaaataaggactatggaggagaaccattt 151 |||||||||||||| || ||||| ||||| || || || ||||||||||| ||||| || Sbjct: 505 tgggttcttcctgactcttacctggatgtgaggaacaaagactatggaggggaacctttc 564 Query: 152 atagatggacaagctgttccttacgaccccaaataccatgaggagtgggtgagaaacaat 211 || ||||| | ||||||||||| || || || ||||| ||||||||| | || |||||| Sbjct: 565 atcgatgggaaggctgttccttatgatcctaagtaccacgaggagtggataaggaacaat 624 Query: 212 gc 213 || Sbjct: 625 gc 626
>gb|AF428427.1|AF428427 Arabidopsis thaliana AT3g15000/K15M2_14 mRNA, complete cds Length = 1459 Score = 67.9 bits (34), Expect = 4e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 92 tgggttcttcctgattcatacctcgatgtcagaaataaggactatggaggagaaccattt 151 |||||||||||||| || ||||| ||||| || || || ||||||||||| ||||| || Sbjct: 562 tgggttcttcctgactcttacctggatgtgaggaacaaagactatggaggggaacctttc 621 Query: 152 atagatggacaagctgttccttacgaccccaaataccatgaggagtgggtgagaaacaat 211 || ||||| | ||||||||||| || || || ||||| ||||||||| | || |||||| Sbjct: 622 atcgatgggaaggctgttccttatgatcctaagtaccacgaggagtggataaggaacaat 681 Query: 212 gc 213 || Sbjct: 682 gc 683
>emb|BX823328.1|CNS0A5D6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS22ZG05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1445 Score = 52.0 bits (26), Expect = 0.002 Identities = 99/122 (81%), Gaps = 1/122 (0%) Strand = Plus / Plus Query: 92 tgggttcttcctgattcatacctcgatgtcagaaataaggactatggaggagaaccattt 151 |||||||||||||| || ||||| ||||| || || || ||||||||||| ||| | || Sbjct: 538 tgggttcttcctgactcttacctggatgtgaggaacaaagactatggaggggaa-ctttc 596 Query: 152 atagatggacaagctgttccttacgaccccaaataccatgaggagtgggtgagaaacaat 211 || ||||| | ||||||||||| || || || ||||| ||||||||| | || |||||| Sbjct: 597 atcgatgggaaggctgttccttatgatcctaagtaccacgaggagtggataaggaacaat 656 Query: 212 gc 213 || Sbjct: 657 gc 658
>gb|AC008007.7|AC008007 Genomic sequence for Arabidopsis thaliana BAC F12M16 from chromosome I, complete sequence Length = 130235 Score = 46.1 bits (23), Expect = 0.14 Identities = 62/75 (82%) Strand = Plus / Minus Query: 139 aggagaaccatttatagatggacaagctgttccttacgaccccaaataccatgaggagtg 198 ||||||||| || || |||||| | ||||||||||| ||||| || || ||||| || || Sbjct: 58967 aggagaacctttcattgatggaaaggctgttccttatgacccaaagtatcatgaagaatg 58908 Query: 199 ggtgagaaacaatgc 213 | | ||||||||||| Sbjct: 58907 gataagaaacaatgc 58893
>dbj|AP000370.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K15M2 Length = 79279 Score = 44.1 bits (22), Expect = 0.55 Identities = 43/50 (86%) Strand = Plus / Plus Query: 92 tgggttcttcctgattcatacctcgatgtcagaaataaggactatggagg 141 |||||||||||||| || ||||| ||||| || || || ||||||||||| Sbjct: 47112 tgggttcttcctgactcttacctggatgtgaggaacaaagactatggagg 47161
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 gggcccgccaccgccttcggg 402 ||||||||||||||||||||| Sbjct: 328931 gggcccgccaccgccttcggg 328951
>emb|AL157935.28| Human DNA sequence from clone RP11-203J24 on chromosome 9 Contains the 5' end of the ENG gene for endoglin (Osler-Rendu-Weber syndrome 1) (END, ORW, HHT1, ORW1, CD105), the AK1 gene for adenylate kinase 1, the ST6GALNAC6 gene for CMP-NeuAC:(beta)-N-acetylgalactosaminide (alpha)2,6-sialyltransferase member VI (ST6GALNACVI), the SIAT7D gene for sialyltransferase 7D ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1, 3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) (SIAT3C, ST6GALNAC4, ST6GALNACIV), the DPM2 gene for dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit (MGC21559), the gene for a novel protien containing FLJ00179, a novel gene and ten CpG islands, complete sequence Length = 164201 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 314 gggcctgctccaccagggcagagcc 338 ||||||||||||| ||||||||||| Sbjct: 156330 gggcctgctccacaagggcagagcc 156354
>emb|X82639.1|MRZP3 M.radiata mRNA for zona pellucida glycoprotein-3 Length = 1299 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 264 ggtcgaggaactttgaaaggagaag 288 ||||||||||||||||||| ||||| Sbjct: 777 ggtcgaggaactttgaaagcagaag 753
>gb|AC092716.7| Mus musculus chromosome 5, clone RP23-14J20, complete sequence Length = 215382 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 553 agctggtaaccaaggctacc 572 |||||||||||||||||||| Sbjct: 139811 agctggtaaccaaggctacc 139792
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 atgctgctcctccaaggcgt 373 |||||||||||||||||||| Sbjct: 2993521 atgctgctcctccaaggcgt 2993502
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 gagaaccatttatagatgga 160 |||||||||||||||||||| Sbjct: 25855639 gagaaccatttatagatgga 25855620
>gb|AC145387.2| Oryza sativa chromosome 3 BAC OSJNBb0031A14 genomic sequence, complete sequence Length = 44761 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 gagaaccatttatagatgga 160 |||||||||||||||||||| Sbjct: 26582 gagaaccatttatagatgga 26563
>emb|AL109853.4|HSJ765F13 Human DNA sequence from clone RP4-765F13 on chromosome Xq25-26.2 Contains two seven transmembrane helix receptor pseudogenes and the gene for a novel protein similar to part of hepatoma-derived growth factor (high-mobility group protein 1-like) (HDGF), complete sequence Length = 106465 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 603 gaccaggcccagcccatcat 622 |||||||||||||||||||| Sbjct: 86758 gaccaggcccagcccatcat 86777
>emb|BX569695.1| Synechococcus sp. WH8102 complete genome; segment 7/7 Length = 344615 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 ggcctgctccaccagggcag 334 |||||||||||||||||||| Sbjct: 195393 ggcctgctccaccagggcag 195412
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 cgggcctgctccaccagggc 332 |||||||||||||||||||| Sbjct: 689459 cgggcctgctccaccagggc 689440
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 gagaaccatttatagatgga 160 |||||||||||||||||||| Sbjct: 25946948 gagaaccatttatagatgga 25946929
>gb|AC105068.19| Mus musculus chromosome 5, clone RP23-445H19, complete sequence Length = 199878 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 ctttgaaaggagaagggaga 293 |||||||||||||||||||| Sbjct: 123988 ctttgaaaggagaagggaga 124007
>gb|AC095350.8| Homo sapiens 12 BAC RP11-662M24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 129055 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 ccatgaggagtgggtgagaa 206 |||||||||||||||||||| Sbjct: 19751 ccatgaggagtgggtgagaa 19732 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,165,088 Number of Sequences: 3902068 Number of extensions: 5165088 Number of successful extensions: 98163 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97905 Number of HSP's gapped (non-prelim): 248 length of query: 628 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 605 effective length of database: 17,143,297,704 effective search space: 10371695110920 effective search space used: 10371695110920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)