ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baall23 |
|---|---|
| Clone Library Name | barley_pub |
>GOX1_ARATH (Q9LRS0) Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 (EC| 1.1.3.15) (Glycolate oxidase 1) (GOX 1) (Short chain alpha-hydroxy acid oxidase 1) Length = 367 Score = 43.5 bits (101), Expect = 1e-04 Identities = 20/27 (74%), Positives = 21/27 (77%) Frame = +2 Query: 2 EFELTMALGGCTKLSDITREHIFTEGD 82 EFELTMAL GC LS+ITR HI TE D Sbjct: 333 EFELTMALSGCRSLSEITRNHIVTEWD 359
>GOX2_ARATH (Q9LRR9) Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 (EC| 1.1.3.15) (Glycolate oxidase 2) (GOX 2) (Short chain alpha-hydroxy acid oxidase 2) Length = 367 Score = 40.0 bits (92), Expect = 0.001 Identities = 18/27 (66%), Positives = 20/27 (74%) Frame = +2 Query: 2 EFELTMALGGCTKLSDITREHIFTEGD 82 EFELTMAL GC L +I+R HI TE D Sbjct: 333 EFELTMALSGCRSLKEISRNHITTEWD 359
>GOX_SPIOL (P05414) Peroxisomal (S)-2-hydroxy-acid oxidase (EC 1.1.3.15)| (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy acid oxidase) Length = 369 Score = 37.0 bits (84), Expect = 0.012 Identities = 16/27 (59%), Positives = 19/27 (70%) Frame = +2 Query: 2 EFELTMALGGCTKLSDITREHIFTEGD 82 EFELTMAL GC L +I+R HI + D Sbjct: 333 EFELTMALSGCRSLKEISRSHIAADWD 359
>PO3F2_RAT (P56222) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 445 Score = 33.1 bits (74), Expect = 0.18 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 5/33 (15%) Frame = +1 Query: 13 HHGARRVHQAQRH-----HPRTHLHRGRPPRPP 96 HHG R H H HP +H H+ PP PP Sbjct: 214 HHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 246
>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 445 Score = 33.1 bits (74), Expect = 0.18 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 5/33 (15%) Frame = +1 Query: 13 HHGARRVHQAQRH-----HPRTHLHRGRPPRPP 96 HHG R H H HP +H H+ PP PP Sbjct: 214 HHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 246
>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 443 Score = 33.1 bits (74), Expect = 0.18 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 5/33 (15%) Frame = +1 Query: 13 HHGARRVHQAQRH-----HPRTHLHRGRPPRPP 96 HHG R H H HP +H H+ PP PP Sbjct: 212 HHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 244
>MYOD1_CHICK (P16075) Myoblast determination protein 1 homolog (MYOD1 homolog)| Length = 298 Score = 32.3 bits (72), Expect = 0.30 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +1 Query: 25 RRVHQAQRHHPRTHLHRGRPPRPPAAEDVIK*PTTHDALIAVSTHGAGICML 180 R VH P H H PPR P E+ ++ P+ H H AG C+L Sbjct: 43 RLVHVGGLLKPEEHPHTRAPPREPTEEEHVRAPSGH--------HQAGRCLL 86
>FOXGB_MOUSE (Q60987) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) Length = 481 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/28 (42%), Positives = 12/28 (42%) Frame = +1 Query: 10 AHHGARRVHQAQRHHPRTHLHRGRPPRP 93 A HG H Q HH H H PP P Sbjct: 35 ASHGHHNSHHPQHHHHHHHHHHPPPPAP 62
>FOXGB_RAT (Q00939) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) Length = 480 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/28 (42%), Positives = 12/28 (42%) Frame = +1 Query: 10 AHHGARRVHQAQRHHPRTHLHRGRPPRP 93 A HG H Q HH H H PP P Sbjct: 35 ASHGHHNSHHPQHHHHHHHHHHPPPPAP 62
>SC5A2_RABIT (P26430) Sodium/nucleoside cotransporter (Na(+)/nucleoside| cotransporter) Length = 672 Score = 29.6 bits (65), Expect = 2.0 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = -2 Query: 310 NLSTTAXRPRPDTHG*HLGADGVV-DIEFAVIIACVALRXGGYW 182 N+S++ RPRPD++ HL D V D+ + ++ + + G YW Sbjct: 250 NISSSCYRPRPDSY--HLLRDPVTGDLPWPALLLGLTIVSGWYW 291
>SC5A2_MOUSE (Q923I7) Sodium/glucose cotransporter 2 (Na(+)/glucose| cotransporter 2) (Low affinity sodium-glucose cotransporter) Length = 670 Score = 29.6 bits (65), Expect = 2.0 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = -2 Query: 310 NLSTTAXRPRPDTHG*HLGADGVV-DIEFAVIIACVALRXGGYW 182 N+S+T +PRPD++ HL D V D+ + ++ + + G YW Sbjct: 248 NISSTCYQPRPDSY--HLLRDPVTGDLPWPALLLGLTIVSGWYW 289
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/32 (37%), Positives = 13/32 (40%) Frame = +1 Query: 10 AHHGARRVHQAQRHHPRTHLHRGRPPRPPAAE 105 AHH H P+ H H PP PP E Sbjct: 1004 AHHHPPHHHHHHAPPPQPHHHHAHPPHPPEME 1035
>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2161 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/32 (37%), Positives = 13/32 (40%) Frame = +1 Query: 10 AHHGARRVHQAQRHHPRTHLHRGRPPRPPAAE 105 AHH H P+ H H PP PP E Sbjct: 996 AHHHPPHHHHHHAPPPQPHHHHAHPPHPPEME 1027
>FOXGA_HUMAN (P55316) Forkhead box protein G1A (Forkhead-related protein FKHL2)| (Transcription factor BF-2) (Brain factor 2) (BF2) (HFK2) Length = 469 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/29 (41%), Positives = 12/29 (41%) Frame = +1 Query: 10 AHHGARRVHQAQRHHPRTHLHRGRPPRPP 96 A HG H Q HH H H PP P Sbjct: 35 ASHGHHNSHHPQHHHHHHHHHHHPPPPAP 63
>FOXGB_HUMAN (P55315) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (HFK1) Length = 477 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/29 (41%), Positives = 12/29 (41%) Frame = +1 Query: 10 AHHGARRVHQAQRHHPRTHLHRGRPPRPP 96 A HG H Q HH H H PP P Sbjct: 35 ASHGHHNSHHPQHHHHHHHHHHHPPPPAP 63
>FOXB2_MOUSE (Q64733) Forkhead box protein B2 (Transcription factor FKH-4)| Length = 428 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/29 (41%), Positives = 13/29 (44%) Frame = +1 Query: 10 AHHGARRVHQAQRHHPRTHLHRGRPPRPP 96 AHH H A HH H + PP PP Sbjct: 144 AHHHHHHHHHAAHHHHHHHPPQPPPPPPP 172
>CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CRE-BPa)| Length = 508 Score = 25.4 bits (54), Expect(2) = 4.4 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 8/73 (10%) Frame = +3 Query: 138 AHRRLDARCGHMHASQYPPXRNATHAIITANSISTTPSAPRC*PCVSGRGRXAVVD---- 305 +H L A H S +PP A ++ + P+ P +G R VVD Sbjct: 316 SHSHLHAHPAHHQTSPHPPLHTGNQAQVSPATQQMQPTQTIQPPQPTGGRRRRVVDEDPD 375 Query: 306 ----KFLRTXRPA 332 KFL R A Sbjct: 376 ERRRKFLERNRAA 388 Score = 21.6 bits (44), Expect(2) = 4.4 Identities = 8/20 (40%), Positives = 8/20 (40%) Frame = +1 Query: 13 HHGARRVHQAQRHHPRTHLH 72 HH HQ HHP H Sbjct: 287 HHPYPHQHQHPAHHPHPQPH 306
>CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CRE-BPa)| (Fragment) Length = 353 Score = 25.4 bits (54), Expect(2) = 4.6 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 8/73 (10%) Frame = +3 Query: 138 AHRRLDARCGHMHASQYPPXRNATHAIITANSISTTPSAPRC*PCVSGRGRXAVVD---- 305 +H L A H S +PP A ++ + P+ P +G R VVD Sbjct: 161 SHSHLHAHPAHHQTSPHPPLHTGNQAQVSPATQQMQPTQTIQPPQPTGGRRRRVVDEDPD 220 Query: 306 ----KFLRTXRPA 332 KFL R A Sbjct: 221 ERRRKFLERNRAA 233 Score = 21.6 bits (44), Expect(2) = 4.6 Identities = 8/20 (40%), Positives = 8/20 (40%) Frame = +1 Query: 13 HHGARRVHQAQRHHPRTHLH 72 HH HQ HHP H Sbjct: 132 HHPYPHQHQHPAHHPHPQPH 151
>RSC1_YEAST (P53236) Chromatin structure remodeling complex protein RSC1| (Remodel the structure of chromatin complex subunit 1) Length = 928 Score = 28.1 bits (61), Expect = 5.7 Identities = 9/12 (75%), Positives = 11/12 (91%) Frame = +1 Query: 52 HPRTHLHRGRPP 87 HP+TH+ RGRPP Sbjct: 220 HPKTHVRRGRPP 231
>CWC25_ASPFU (Q4X1D7) Pre-mRNA-splicing factor cwc25| Length = 447 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +1 Query: 7 RAHHGARRVHQAQRHHPRTHLHRGRPPRPPAAED 108 R+ H H++ RH R+H HR R P P D Sbjct: 195 RSRHEDEDAHRSHRH--RSHRHRSRSPLSPDRSD 226
>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)| (Helicase-like protein NHL) Length = 1400 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%) Frame = +1 Query: 40 AQRHHPRTHLHRGRP---PRPPAAED 108 AQ+ P+ HL++GRP PRPP D Sbjct: 1013 AQQLDPQEHLNQGRPHLSPRPPPTGD 1038
>HUTG_BORBR (Q7WJ55) Formimidoylglutamase (EC 3.5.3.8) (Formiminoglutamase)| (Formiminoglutamate hydrolase) Length = 317 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = -2 Query: 100 QRAAEAVALGEDVFAGDVAELG 35 +R A VALG+D AGD A LG Sbjct: 24 RRLAHIVALGQDAGAGDAAVLG 45
>ANGL2_MOUSE (Q9R045) Angiopoietin-related protein 2 precursor| (Angiopoietin-like 2) Length = 493 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = +1 Query: 10 AHHGARRVHQAQRHHPRTHLHRGRPPRPPAAEDVIK*PTTHDALI 144 AH+ + + Q + H R R P PPAA + P T++ +I Sbjct: 190 AHNQSEVIAQLEEHCQRVPAARPMPQPPPAAPPRVYQPPTYNRII 234 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,231,605 Number of Sequences: 219361 Number of extensions: 653325 Number of successful extensions: 2439 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2229 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2398 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
