Clone Name | baall23 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 95.6 bits (48), Expect = 9e-17 Identities = 84/96 (87%) Strand = Plus / Plus Query: 1 ggagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcga 60 ||||||||||||||||||||||||| |||| |||||| |||| |||||||||||||| Sbjct: 32328056 ggagttcgagctcaccatggcgctcagcggatgcacctcgctcgccgacatcacccgcgc 32328115 Query: 61 acacatcttcaccgagggcgaccgcctcggccgccc 96 ||||||| |||||| | ||||||||||| |||||| Sbjct: 32328116 ccacatctacaccgacgccgaccgcctcgcccgccc 32328151
>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence Length = 102751 Score = 95.6 bits (48), Expect = 9e-17 Identities = 84/96 (87%) Strand = Plus / Plus Query: 1 ggagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcga 60 ||||||||||||||||||||||||| |||| |||||| |||| |||||||||||||| Sbjct: 61823 ggagttcgagctcaccatggcgctcagcggatgcacctcgctcgccgacatcacccgcgc 61882 Query: 61 acacatcttcaccgagggcgaccgcctcggccgccc 96 ||||||| |||||| | ||||||||||| |||||| Sbjct: 61883 ccacatctacaccgacgccgaccgcctcgcccgccc 61918
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 95.6 bits (48), Expect = 9e-17 Identities = 84/96 (87%) Strand = Plus / Plus Query: 1 ggagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcga 60 ||||||||||||||||||||||||| |||| |||||| |||| |||||||||||||| Sbjct: 32418566 ggagttcgagctcaccatggcgctcagcggatgcacctcgctcgccgacatcacccgcgc 32418625 Query: 61 acacatcttcaccgagggcgaccgcctcggccgccc 96 ||||||| |||||| | ||||||||||| |||||| Sbjct: 32418626 ccacatctacaccgacgccgaccgcctcgcccgccc 32418661
>dbj|AK120304.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052N09, full insert sequence Length = 1526 Score = 95.6 bits (48), Expect = 9e-17 Identities = 84/96 (87%) Strand = Plus / Plus Query: 1 ggagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcga 60 ||||||||||||||||||||||||| |||| |||||| |||| |||||||||||||| Sbjct: 1074 ggagttcgagctcaccatggcgctcagcggatgcacctcgctcgccgacatcacccgcgc 1133 Query: 61 acacatcttcaccgagggcgaccgcctcggccgccc 96 ||||||| |||||| | ||||||||||| |||||| Sbjct: 1134 ccacatctacaccgacgccgaccgcctcgcccgccc 1169
>dbj|AK098878.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E15, full insert sequence Length = 1522 Score = 95.6 bits (48), Expect = 9e-17 Identities = 84/96 (87%) Strand = Plus / Plus Query: 1 ggagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcga 60 ||||||||||||||||||||||||| |||| |||||| |||| |||||||||||||| Sbjct: 1070 ggagttcgagctcaccatggcgctcagcggatgcacctcgctcgccgacatcacccgcgc 1129 Query: 61 acacatcttcaccgagggcgaccgcctcggccgccc 96 ||||||| |||||| | ||||||||||| |||||| Sbjct: 1130 ccacatctacaccgacgccgaccgcctcgcccgccc 1165
>dbj|AK061719.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-H12, full insert sequence Length = 1586 Score = 95.6 bits (48), Expect = 9e-17 Identities = 84/96 (87%) Strand = Plus / Plus Query: 1 ggagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcga 60 ||||||||||||||||||||||||| |||| |||||| |||| |||||||||||||| Sbjct: 1134 ggagttcgagctcaccatggcgctcagcggatgcacctcgctcgccgacatcacccgcgc 1193 Query: 61 acacatcttcaccgagggcgaccgcctcggccgccc 96 ||||||| |||||| | ||||||||||| |||||| Sbjct: 1194 ccacatctacaccgacgccgaccgcctcgcccgccc 1229
>gb|AF022740.1|AF022740 Oryza sativa glycolate oxidase (GOX) mRNA, complete cds Length = 1473 Score = 71.9 bits (36), Expect = 1e-09 Identities = 81/96 (84%) Strand = Plus / Plus Query: 1 ggagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcga 60 |||||||||||||||||||||| || |||| |||||| |||| |||||||||||||| Sbjct: 1040 ggagttcgagctcaccatggcgttcagcggatgcacctcgctcgccgacatcacccgcgc 1099 Query: 61 acacatcttcaccgagggcgaccgcctcggccgccc 96 ||||||| ||| || | ||| ||||||| |||||| Sbjct: 1100 ccacatctacacggacgccgaacgcctcgcccgccc 1135
>ref|XM_476669.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1439 Score = 65.9 bits (33), Expect = 8e-08 Identities = 69/81 (85%) Strand = Plus / Plus Query: 2 gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 61 |||||||||||||||||||||||| |||| |||||| ||| ||||||||||||| | Sbjct: 1066 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 1125 Query: 62 cacatcttcaccgagggcgac 82 ||| || ||||||||| |||| Sbjct: 1126 cacgtcatcaccgaggccgac 1146
>ref|XM_506164.1| PREDICTED Oryza sativa (japonica cultivar-group), B1364A02.11-1 mRNA Length = 1501 Score = 65.9 bits (33), Expect = 8e-08 Identities = 69/81 (85%) Strand = Plus / Plus Query: 2 gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 61 |||||||||||||||||||||||| |||| |||||| ||| ||||||||||||| | Sbjct: 1107 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 1166 Query: 62 cacatcttcaccgagggcgac 82 ||| || ||||||||| |||| Sbjct: 1167 cacgtcatcaccgaggccgac 1187
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 65.9 bits (33), Expect = 8e-08 Identities = 69/81 (85%) Strand = Plus / Plus Query: 2 gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 61 |||||||||||||||||||||||| |||| |||||| ||| ||||||||||||| | Sbjct: 2833101 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 2833160 Query: 62 cacatcttcaccgagggcgac 82 ||| || ||||||||| |||| Sbjct: 2833161 cacgtcatcaccgaggccgac 2833181
>dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1364A02 Length = 137933 Score = 65.9 bits (33), Expect = 8e-08 Identities = 69/81 (85%) Strand = Plus / Plus Query: 2 gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 61 |||||||||||||||||||||||| |||| |||||| ||| ||||||||||||| | Sbjct: 136662 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 136721 Query: 62 cacatcttcaccgagggcgac 82 ||| || ||||||||| |||| Sbjct: 136722 cacgtcatcaccgaggccgac 136742
>dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0050B07 Length = 142134 Score = 65.9 bits (33), Expect = 8e-08 Identities = 69/81 (85%) Strand = Plus / Plus Query: 2 gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 61 |||||||||||||||||||||||| |||| |||||| ||| ||||||||||||| | Sbjct: 3388 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 3447 Query: 62 cacatcttcaccgagggcgac 82 ||| || ||||||||| |||| Sbjct: 3448 cacgtcatcaccgaggccgac 3468
>dbj|AK120929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036A14, full insert sequence Length = 1738 Score = 65.9 bits (33), Expect = 8e-08 Identities = 69/81 (85%) Strand = Plus / Plus Query: 2 gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 61 |||||||||||||||||||||||| |||| |||||| ||| ||||||||||||| | Sbjct: 1365 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 1424 Query: 62 cacatcttcaccgagggcgac 82 ||| || ||||||||| |||| Sbjct: 1425 cacgtcatcaccgaggccgac 1445
>dbj|AK103933.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E11, full insert sequence Length = 1439 Score = 65.9 bits (33), Expect = 8e-08 Identities = 69/81 (85%) Strand = Plus / Plus Query: 2 gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 61 |||||||||||||||||||||||| |||| |||||| ||| ||||||||||||| | Sbjct: 1066 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 1125 Query: 62 cacatcttcaccgagggcgac 82 ||| || ||||||||| |||| Sbjct: 1126 cacgtcatcaccgaggccgac 1146
>dbj|AK062189.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E08, full insert sequence Length = 1501 Score = 65.9 bits (33), Expect = 8e-08 Identities = 69/81 (85%) Strand = Plus / Plus Query: 2 gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 61 |||||||||||||||||||||||| |||| |||||| ||| ||||||||||||| | Sbjct: 1107 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 1166 Query: 62 cacatcttcaccgagggcgac 82 ||| || ||||||||| |||| Sbjct: 1167 cacgtcatcaccgaggccgac 1187
>gb|AY108197.1| Zea mays PCO065133 mRNA sequence Length = 1667 Score = 61.9 bits (31), Expect = 1e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 2 gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 61 |||||||||||||||||||||||| |||| |||||| ||| ||| ||||||||| | Sbjct: 1214 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgaaatcacccgcaag 1273 Query: 62 cacatcttcaccgag 76 |||||| |||||||| Sbjct: 1274 cacatcatcaccgag 1288
>ref|XM_473942.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1104 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 8 gagctcaccatggcgctcggcgggtgcac 36 |||||||||||||||||| |||| ||||| Sbjct: 1006 gagctcaccatggcgctcagcggatgcac 1034
>emb|AL606645.2|OSJN00079 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053K19, complete sequence Length = 187601 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 8 gagctcaccatggcgctcggcgggtgcac 36 |||||||||||||||||| |||| ||||| Sbjct: 59332 gagctcaccatggcgctcagcggatgcac 59360
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 8 gagctcaccatggcgctcggcgggtgcac 36 |||||||||||||||||| |||| ||||| Sbjct: 31726062 gagctcaccatggcgctcagcggatgcac 31726090
>gb|AY173074.1| Zantedeschia aethiopica glycolate oxidase (gox) mRNA, complete cds Length = 1486 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 ggagttcgagctcaccatggc 21 ||||||||||||||||||||| Sbjct: 1095 ggagttcgagctcaccatggc 1115
>dbj|AK068638.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156O03, full insert sequence Length = 1435 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 8 gagctcaccatggcgctcggcgggtgcac 36 |||||||||||||||||| |||| ||||| Sbjct: 1075 gagctcaccatggcgctcagcggatgcac 1103
>dbj|AK060221.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F07, full insert sequence Length = 1427 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 8 gagctcaccatggcgctcggcgggtgcac 36 |||||||||||||||||| |||| ||||| Sbjct: 1079 gagctcaccatggcgctcagcggatgcac 1107
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 cgaccgcctcggccgcccgc 98 |||||||||||||||||||| Sbjct: 1195645 cgaccgcctcggccgcccgc 1195626
>gb|AY248747.1| Xanthomonas campestris pv. vesicatoria OpgH (opgH) gene, complete cds Length = 3005 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 40 gctcagcgacatcacccgcgaacacatc 67 ||||||||||| ||||||||| |||||| Sbjct: 1024 gctcagcgacaccacccgcgagcacatc 1051
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 40 gctcagcgacatcacccgcgaacacatc 67 ||||||||||| ||||||||| |||||| Sbjct: 766298 gctcagcgacaccacccgcgagcacatc 766325
>emb|AL627222.10| Mouse DNA sequence from clone RP23-265A5 on chromosome 11 Contains a novel gene, the Tac4 gene for tachykinin, the Myst2 gene for MYST histone acetyltransferase 2, two novel genes, the 5' end of the gene for the likely ortholog of H. sapiens C/EBP-induced protein (5730593F17Rik) and a CpG island, complete sequence Length = 185645 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 ccgcctcggccgcccgctgc 101 |||||||||||||||||||| Sbjct: 35105 ccgcctcggccgcccgctgc 35124
>gb|BC055690.1| Mus musculus RIKEN cDNA 5730593F17 gene, mRNA (cDNA clone MGC:66582 IMAGE:6415669), complete cds Length = 2306 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 ccgcctcggccgcccgctgc 101 |||||||||||||||||||| Sbjct: 52 ccgcctcggccgcccgctgc 33
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 40 gctcagcgacatcacccgcgaacacatc 67 ||||||||||| ||||||||| |||||| Sbjct: 4277355 gctcagcgacaccacccgcgagcacatc 4277328
>gb|AE011690.1| Xanthomonas axonopodis pv. citri str. 306, section 68 of 469 of the complete genome Length = 11141 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 40 gctcagcgacatcacccgcgaacacatc 67 ||||||||||| ||||||||| |||||| Sbjct: 3617 gctcagcgacaccacccgcgagcacatc 3644
>dbj|AK143632.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched library, clone:F430004E11 product:C/EBP-induced protein homolog, full insert sequence Length = 2324 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 ccgcctcggccgcccgctgc 101 |||||||||||||||||||| Sbjct: 81 ccgcctcggccgcccgctgc 62
>dbj|AK165378.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched library, clone:F430205F12 product:C/EBP-induced protein homolog [Mus musculus], full insert sequence Length = 984 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 ccgcctcggccgcccgctgc 101 |||||||||||||||||||| Sbjct: 81 ccgcctcggccgcccgctgc 62
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 40 gctcagcgacatcacccgcgaacacatc 67 ||||||||||| ||||||||| |||||| Sbjct: 4284145 gctcagcgacaccacccgcgagcacatc 4284118
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ccgagggcgaccgcctcggc 91 |||||||||||||||||||| Sbjct: 2686049 ccgagggcgaccgcctcggc 2686030 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,595,796 Number of Sequences: 3902068 Number of extensions: 1595796 Number of successful extensions: 29315 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28904 Number of HSP's gapped (non-prelim): 403 length of query: 332 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 310 effective length of database: 17,147,199,772 effective search space: 5315631929320 effective search space used: 5315631929320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)