>TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA|
           protein 1)
          Length = 124

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 24/59 (40%), Positives = 33/59 (55%)
 Frame = -2

Query: 535 ESPAHSSTGTRSEITFPSHCLGAQHGFTFYFTTHWGFFSPFPHGTTSLSVTQEYLALQG 359
           +SP H     R++ T         + FT++FT    FFS F H T SLSV+++YLAL G
Sbjct: 3   DSPTHKEQ--RAQNTMSDQMPFPFNNFTYFFTLFSKFFSSFHHCTCSLSVSRQYLALDG 59

>TAR1_KLULA (Q6CQE5) Protein TAR1|
          Length = 109

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = -2

Query: 463 HGFTFYFTTHWGFFSPFPHGTTSLSVTQEYLALQG 359
           + FT++FT    FFS F H T SLSV+++YLAL G
Sbjct: 10  NNFTYFFTLFSKFFSSFHHCTCSLSVSRQYLALDG 44

>RPOA_PRRS1 (Q9YN02) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
           Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha
           papain-like cysteine proteinase (EC 3.4.22.-)
           (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase
           (EC 3.4.22.-) (PCP
          Length = 3966

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 579 TAPVGSVPLTKPLPMSRRLILQQARGQRSL--SPPTAWELSTVSRSISLPT 433
           T PV S+P  KP+P  RR +        SL    P +WE   VS  + LPT
Sbjct: 824 TKPVKSLPERKPVPAPRRKVGPDCGSPVSLGGDVPNSWEDLAVSSPLDLPT 874

>RPOA_PRRSR (Q9WJB2) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
            Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha
            papain-like cysteine proteinase (EC 3.4.22.-)
            (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase
            (EC 3.4.22.-) (PCP
          Length = 3960

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = -3

Query: 579  TAPVGSVPLTKPLPMSRRLILQQARGQRSL--SPPTAWELSTVSRSISLPTGGSFHLSLT 406
            T PV S+P  KP+P  RR +        SL    P +WE   VS    LPT        +
Sbjct: 824  TKPVKSLPERKPVPAPRRKVGSDCGSPVSLGGDVPNSWEDLAVSSPFDLPTPPEPATPSS 883

Query: 405  VLLRYRSPRSI*PCKVVLADSHGIP 331
             L+   SP+ I      L++   IP
Sbjct: 884  ELVIVSSPQCIFRPATPLSEPAPIP 908

>TRI42_HUMAN (Q8IWZ5) Tripartite motif protein 42|
          Length = 723

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -2

Query: 586 FRYGSGGFRSLNQATAYESPAHSSTGTRSEITFPSHCLGAQH 461
           F  G    RS   +     P HS T    ++TF +H LG QH
Sbjct: 490 FPTGPKKVRSSGDSLPSPYPVHSETMIARKVTFSTHSLGNQH 531


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,810,785
Number of Sequences: 219361
Number of extensions: 1758347
Number of successful extensions: 3586
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3581
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)