ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baall12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 100 1e-17
2gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17... 100 1e-17
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
4dbj|AK120304.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 1e-17
5dbj|AK098878.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 1e-17
6dbj|AK061719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 1e-17
7gb|AF022740.1|AF022740 Oryza sativa glycolate oxidase (GOX) mRNA... 68 4e-08
8ref|XM_476669.1| Oryza sativa (japonica cultivar-group), mRNA 66 1e-07
9ref|XM_506164.1| PREDICTED Oryza sativa (japonica cultivar-group... 66 1e-07
10dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
11dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
12dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
13dbj|AK120929.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
14dbj|AK103933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
15dbj|AK062189.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
16gb|AY108197.1| Zea mays PCO065133 mRNA sequence 62 2e-06
17gb|AY173074.1| Zantedeschia aethiopica glycolate oxidase (gox) m... 44 0.54
18gb|AC026116.26| Homo sapiens 12 BAC RP11-1022B3 (Roswell Park Ca... 44 0.54
19ref|XM_473942.1| Oryza sativa (japonica cultivar-group), predic... 42 2.1
20emb|AL606645.2|OSJN00079 Oryza sativa genomic DNA, chromosome 4,... 42 2.1
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
22dbj|AK068638.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
23dbj|AK060221.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
24gb|AC133710.4| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
25gb|AY248747.1| Xanthomonas campestris pv. vesicatoria OpgH (opgH... 40 8.4
26gb|AC091262.8| Mus musculus chromosome 9, clone RP23-38G1, compl... 40 8.4
27gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
28emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 8.4
29emb|BX897673.1| Neurospora crassa DNA linkage group III BAC clon... 40 8.4
30emb|BX957246.7| Zebrafish DNA sequence from clone CH211-89F7 in ... 40 8.4
31dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 8.4
32gb|AC009371.7| Drosophila melanogaster 3L BAC RP98-44K7 (Roswell... 40 8.4
33gb|AE011690.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 8.4
34gb|AC156035.5| Mus musculus BAC clone RP23-302M20 from chromosom... 40 8.4
35dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
36dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
37gb|AC005639.2|AC005639 Drosophila melanogaster, chromosome 2R, r... 40 8.4
38dbj|AK110285.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.4
39gb|AE003523.3| Drosophila melanogaster chromosome 3L, section 62... 40 8.4
40gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69... 40 8.4
41gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 8.4
42gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
43gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
44emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa... 40 8.4 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 100/114 (87%), Gaps = 2/114 (1%)
 Strand = Plus / Plus

                                                                            
Query: 50       aacgtgctgcgcatgnatgcgggnaggagttcgagctcaccatggcgctcggcgggtgca 109
                ||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||| ||||
Sbjct: 32328033 aacgtgctgcggatg-atgcggg-aggagttcgagctcaccatggcgctcagcggatgca 32328090

                                                                      
Query: 110      ccaagctcagcgacatcacccgcgaacacatcttcaccgagggcgaccgcctcg 163
                ||  ||||  ||||||||||||||  ||||||| |||||| | |||||||||||
Sbjct: 32328091 cctcgctcgccgacatcacccgcgcccacatctacaccgacgccgaccgcctcg 32328144
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>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence
          Length = 102751

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 100/114 (87%), Gaps = 2/114 (1%)
 Strand = Plus / Plus

                                                                         
Query: 50    aacgtgctgcgcatgnatgcgggnaggagttcgagctcaccatggcgctcggcgggtgca 109
             ||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||| ||||
Sbjct: 61800 aacgtgctgcggatg-atgcggg-aggagttcgagctcaccatggcgctcagcggatgca 61857

                                                                   
Query: 110   ccaagctcagcgacatcacccgcgaacacatcttcaccgagggcgaccgcctcg 163
             ||  ||||  ||||||||||||||  ||||||| |||||| | |||||||||||
Sbjct: 61858 cctcgctcgccgacatcacccgcgcccacatctacaccgacgccgaccgcctcg 61911
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 100/114 (87%), Gaps = 2/114 (1%)
 Strand = Plus / Plus

                                                                            
Query: 50       aacgtgctgcgcatgnatgcgggnaggagttcgagctcaccatggcgctcggcgggtgca 109
                ||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||| ||||
Sbjct: 32418543 aacgtgctgcggatg-atgcggg-aggagttcgagctcaccatggcgctcagcggatgca 32418600

                                                                      
Query: 110      ccaagctcagcgacatcacccgcgaacacatcttcaccgagggcgaccgcctcg 163
                ||  ||||  ||||||||||||||  ||||||| |||||| | |||||||||||
Sbjct: 32418601 cctcgctcgccgacatcacccgcgcccacatctacaccgacgccgaccgcctcg 32418654
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>dbj|AK120304.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052N09, full
            insert sequence
          Length = 1526

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 100/114 (87%), Gaps = 2/114 (1%)
 Strand = Plus / Plus

                                                                        
Query: 50   aacgtgctgcgcatgnatgcgggnaggagttcgagctcaccatggcgctcggcgggtgca 109
            ||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||| ||||
Sbjct: 1051 aacgtgctgcggatg-atgcggg-aggagttcgagctcaccatggcgctcagcggatgca 1108

                                                                  
Query: 110  ccaagctcagcgacatcacccgcgaacacatcttcaccgagggcgaccgcctcg 163
            ||  ||||  ||||||||||||||  ||||||| |||||| | |||||||||||
Sbjct: 1109 cctcgctcgccgacatcacccgcgcccacatctacaccgacgccgaccgcctcg 1162
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>dbj|AK098878.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E15, full
            insert sequence
          Length = 1522

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 100/114 (87%), Gaps = 2/114 (1%)
 Strand = Plus / Plus

                                                                        
Query: 50   aacgtgctgcgcatgnatgcgggnaggagttcgagctcaccatggcgctcggcgggtgca 109
            ||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||| ||||
Sbjct: 1047 aacgtgctgcggatg-atgcggg-aggagttcgagctcaccatggcgctcagcggatgca 1104

                                                                  
Query: 110  ccaagctcagcgacatcacccgcgaacacatcttcaccgagggcgaccgcctcg 163
            ||  ||||  ||||||||||||||  ||||||| |||||| | |||||||||||
Sbjct: 1105 cctcgctcgccgacatcacccgcgcccacatctacaccgacgccgaccgcctcg 1158
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>dbj|AK061719.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-H12, full
            insert sequence
          Length = 1586

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 100/114 (87%), Gaps = 2/114 (1%)
 Strand = Plus / Plus

                                                                        
Query: 50   aacgtgctgcgcatgnatgcgggnaggagttcgagctcaccatggcgctcggcgggtgca 109
            ||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||| ||||
Sbjct: 1111 aacgtgctgcggatg-atgcggg-aggagttcgagctcaccatggcgctcagcggatgca 1168

                                                                  
Query: 110  ccaagctcagcgacatcacccgcgaacacatcttcaccgagggcgaccgcctcg 163
            ||  ||||  ||||||||||||||  ||||||| |||||| | |||||||||||
Sbjct: 1169 cctcgctcgccgacatcacccgcgcccacatctacaccgacgccgaccgcctcg 1222
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>gb|AF022740.1|AF022740 Oryza sativa glycolate oxidase (GOX) mRNA, complete cds
          Length = 1473

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 76/90 (84%)
 Strand = Plus / Plus

                                                                        
Query: 74   aggagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcg 133
            ||||||||||||||||||||||| || |||| ||||||  ||||  ||||||||||||||
Sbjct: 1039 aggagttcgagctcaccatggcgttcagcggatgcacctcgctcgccgacatcacccgcg 1098

                                          
Query: 134  aacacatcttcaccgagggcgaccgcctcg 163
              ||||||| ||| || | ||| |||||||
Sbjct: 1099 cccacatctacacggacgccgaacgcctcg 1128
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>ref|XM_476669.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1439

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                        
Query: 76   gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 135
            |||||||||||||||||||||||| |||| ||||||   |||  ||||||||||||| | 
Sbjct: 1066 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 1125

                                 
Query: 136  cacatcttcaccgagggcgac 156
            ||| || ||||||||| ||||
Sbjct: 1126 cacgtcatcaccgaggccgac 1146
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>ref|XM_506164.1| PREDICTED Oryza sativa (japonica cultivar-group), B1364A02.11-1 mRNA
          Length = 1501

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                        
Query: 76   gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 135
            |||||||||||||||||||||||| |||| ||||||   |||  ||||||||||||| | 
Sbjct: 1107 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 1166

                                 
Query: 136  cacatcttcaccgagggcgac 156
            ||| || ||||||||| ||||
Sbjct: 1167 cacgtcatcaccgaggccgac 1187
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                           
Query: 76      gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 135
               |||||||||||||||||||||||| |||| ||||||   |||  ||||||||||||| | 
Sbjct: 2833101 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 2833160

                                    
Query: 136     cacatcttcaccgagggcgac 156
               ||| || ||||||||| ||||
Sbjct: 2833161 cacgtcatcaccgaggccgac 2833181
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>dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1364A02
          Length = 137933

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                          
Query: 76     gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 135
              |||||||||||||||||||||||| |||| ||||||   |||  ||||||||||||| | 
Sbjct: 136662 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 136721

                                   
Query: 136    cacatcttcaccgagggcgac 156
              ||| || ||||||||| ||||
Sbjct: 136722 cacgtcatcaccgaggccgac 136742
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>dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OSJNBb0050B07
          Length = 142134

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                        
Query: 76   gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 135
            |||||||||||||||||||||||| |||| ||||||   |||  ||||||||||||| | 
Sbjct: 3388 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 3447

                                 
Query: 136  cacatcttcaccgagggcgac 156
            ||| || ||||||||| ||||
Sbjct: 3448 cacgtcatcaccgaggccgac 3468
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>dbj|AK120929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036A14, full
            insert sequence
          Length = 1738

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                        
Query: 76   gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 135
            |||||||||||||||||||||||| |||| ||||||   |||  ||||||||||||| | 
Sbjct: 1365 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 1424

                                 
Query: 136  cacatcttcaccgagggcgac 156
            ||| || ||||||||| ||||
Sbjct: 1425 cacgtcatcaccgaggccgac 1445
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>dbj|AK103933.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E11, full
            insert sequence
          Length = 1439

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                        
Query: 76   gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 135
            |||||||||||||||||||||||| |||| ||||||   |||  ||||||||||||| | 
Sbjct: 1066 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 1125

                                 
Query: 136  cacatcttcaccgagggcgac 156
            ||| || ||||||||| ||||
Sbjct: 1126 cacgtcatcaccgaggccgac 1146
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>dbj|AK062189.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E08, full
            insert sequence
          Length = 1501

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                        
Query: 76   gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 135
            |||||||||||||||||||||||| |||| ||||||   |||  ||||||||||||| | 
Sbjct: 1107 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 1166

                                 
Query: 136  cacatcttcaccgagggcgac 156
            ||| || ||||||||| ||||
Sbjct: 1167 cacgtcatcaccgaggccgac 1187
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>gb|AY108197.1| Zea mays PCO065133 mRNA sequence
          Length = 1667

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                        
Query: 76   gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 135
            |||||||||||||||||||||||| |||| ||||||   |||  ||| ||||||||| | 
Sbjct: 1214 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgaaatcacccgcaag 1273

                           
Query: 136  cacatcttcaccgag 150
            |||||| ||||||||
Sbjct: 1274 cacatcatcaccgag 1288
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>gb|AY173074.1| Zantedeschia aethiopica glycolate oxidase (gox) mRNA, complete cds
          Length = 1486

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 74   aggagttcgagctcaccatggc 95
            ||||||||||||||||||||||
Sbjct: 1094 aggagttcgagctcaccatggc 1115
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>gb|AC026116.26| Homo sapiens 12 BAC RP11-1022B3 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 177267

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 531   tttggatactggtattatctgg 552
             ||||||||||||||||||||||
Sbjct: 22883 tttggatactggtattatctgg 22904
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>ref|XM_473942.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1104

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 82   gagctcaccatggcgctcggcgggtgcac 110
            |||||||||||||||||| |||| |||||
Sbjct: 1006 gagctcaccatggcgctcagcggatgcac 1034
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>emb|AL606645.2|OSJN00079 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053K19,
             complete sequence
          Length = 187601

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 82    gagctcaccatggcgctcggcgggtgcac 110
             |||||||||||||||||| |||| |||||
Sbjct: 59332 gagctcaccatggcgctcagcggatgcac 59360
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 82       gagctcaccatggcgctcggcgggtgcac 110
                |||||||||||||||||| |||| |||||
Sbjct: 31726062 gagctcaccatggcgctcagcggatgcac 31726090
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>dbj|AK068638.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156O03, full
            insert sequence
          Length = 1435

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 82   gagctcaccatggcgctcggcgggtgcac 110
            |||||||||||||||||| |||| |||||
Sbjct: 1075 gagctcaccatggcgctcagcggatgcac 1103
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>dbj|AK060221.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F07, full
            insert sequence
          Length = 1427

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 82   gagctcaccatggcgctcggcgggtgcac 110
            |||||||||||||||||| |||| |||||
Sbjct: 1079 gagctcaccatggcgctcagcggatgcac 1107
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>gb|AC133710.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0002A19, complete sequence
          Length = 139052

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 408   tctcgccatttccaccatatttcgcacc 435
             |||| |||||||||||| ||||||||||
Sbjct: 29956 tctctccatttccaccaaatttcgcacc 29983
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>gb|AY248747.1| Xanthomonas campestris pv. vesicatoria OpgH (opgH) gene, complete cds
          Length = 3005

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 114  gctcagcgacatcacccgcgaacacatc 141
            ||||||||||| ||||||||| ||||||
Sbjct: 1024 gctcagcgacaccacccgcgagcacatc 1051
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>gb|AC091262.8| Mus musculus chromosome 9, clone RP23-38G1, complete sequence
          Length = 157984

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 585   actgcaaggtgggcgtcttg 604
             ||||||||||||||||||||
Sbjct: 46578 actgcaaggtgggcgtcttg 46559
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>gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062E06,
              complete sequence
          Length = 158842

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 408    tctcgccatttccaccatatttcgcacc 435
              |||| |||||||||||| ||||||||||
Sbjct: 158415 tctctccatttccaccaaatttcgcacc 158442
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 114    gctcagcgacatcacccgcgaacacatc 141
              ||||||||||| ||||||||| ||||||
Sbjct: 766298 gctcagcgacaccacccgcgagcacatc 766325
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>emb|BX897673.1| Neurospora crassa DNA linkage group III BAC clone B13M15
          Length = 63598

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   cgcaacgcaacgcaacgcac 285
             ||||||||||||||||||||
Sbjct: 42560 cgcaacgcaacgcaacgcac 42541
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>emb|BX957246.7| Zebrafish DNA sequence from clone CH211-89F7 in linkage group 5, complete
              sequence
          Length = 186135

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 442    accatattgtatttccatgt 461
              ||||||||||||||||||||
Sbjct: 166688 accatattgtatttccatgt 166707
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 114     gctcagcgacatcacccgcgaacacatc 141
               ||||||||||| ||||||||| ||||||
Sbjct: 4277355 gctcagcgacaccacccgcgagcacatc 4277328
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>gb|AC009371.7| Drosophila melanogaster 3L BAC RP98-44K7 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 174645

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   cgcaacgcaacgcaacgcac 285
             ||||||||||||||||||||
Sbjct: 26540 cgcaacgcaacgcaacgcac 26559
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>gb|AE011690.1| Xanthomonas axonopodis pv. citri str. 306,  section 68 of 469 of the
            complete genome
          Length = 11141

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 114  gctcagcgacatcacccgcgaacacatc 141
            ||||||||||| ||||||||| ||||||
Sbjct: 3617 gctcagcgacaccacccgcgagcacatc 3644
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>gb|AC156035.5| Mus musculus BAC clone RP23-302M20 from chromosome 12, complete sequence
          Length = 187168

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 572    aagtgcaagctctactgcaa 591
              ||||||||||||||||||||
Sbjct: 172505 aagtgcaagctctactgcaa 172486
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 492      attctgtatttatcatacat 511
                ||||||||||||||||||||
Sbjct: 22849562 attctgtatttatcatacat 22849581
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 408      tctcgccatttccaccatatttcgcacc 435
                |||| |||||||||||| ||||||||||
Sbjct: 17868764 tctctccatttccaccaaatttcgcacc 17868791
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>gb|AC005639.2|AC005639 Drosophila melanogaster, chromosome 2R, region 59E3-59F4, BAC clone
             BACR48M01, complete sequence
          Length = 188272

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   cgcaacgcaacgcaacgcac 285
             ||||||||||||||||||||
Sbjct: 77484 cgcaacgcaacgcaacgcac 77465
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>dbj|AK110285.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-E12, full
           insert sequence
          Length = 2833

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 266 cgcaacgcaacgcaacgcac 285
           ||||||||||||||||||||
Sbjct: 878 cgcaacgcaacgcaacgcac 859
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>gb|AE003523.3| Drosophila melanogaster chromosome 3L, section 62 of 83 of the
            complete sequence
          Length = 290640

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 266  cgcaacgcaacgcaacgcac 285
            ||||||||||||||||||||
Sbjct: 5008 cgcaacgcaacgcaacgcac 5027
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>gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69 of 73 of the complete
              sequence
          Length = 598988

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 266    cgcaacgcaacgcaacgcac 285
              ||||||||||||||||||||
Sbjct: 111024 cgcaacgcaacgcaacgcac 111005
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 114     gctcagcgacatcacccgcgaacacatc 141
               ||||||||||| ||||||||| ||||||
Sbjct: 4284145 gctcagcgacaccacccgcgagcacatc 4284118
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 408      tctcgccatttccaccatatttcgcacc 435
                |||| |||||||||||| ||||||||||
Sbjct: 17963081 tctctccatttccaccaaatttcgcacc 17963108
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 492      attctgtatttatcatacat 511
                ||||||||||||||||||||
Sbjct: 22777753 attctgtatttatcatacat 22777772
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>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 148705

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 492    attctgtatttatcatacat 511
              ||||||||||||||||||||
Sbjct: 107282 attctgtatttatcatacat 107263


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,170,208
Number of Sequences: 3902068
Number of extensions: 3170208
Number of successful extensions: 51869
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51440
Number of HSP's gapped (non-prelim): 415
length of query: 619
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 596
effective length of database: 17,143,297,704
effective search space: 10217405431584
effective search space used: 10217405431584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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