ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baall09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF287276.1|AF287276 Hordeum vulgare chlorophyll a/b-binding protein precursor (Lhca4) mRNA, partial cds; nuclear gene for chloroplast product Length = 687 Score = 880 bits (444), Expect = 0.0 Identities = 462/466 (99%), Gaps = 2/466 (0%) Strand = Plus / Plus Query: 3 gggcggtgggcgatgctgggggtggcggggnatgctgatcccggnngtgctgaccaag-c 61 |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| | Sbjct: 223 gggcggtgggcgatgctgggggtggcgggg-atgctgatcccggaggtgctgaccaaggc 281 Query: 62 ggggctgctgaacgcgcccgagtggtacgacgccggcaaggagacctacttcgcctcctc 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 282 ggggctgctgaacgcgcccgagtggtacgacgccggcaaggagacctacttcgcctcctc 341 Query: 122 ctccacgctcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggca 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 342 ctccacgctcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggca 401 Query: 182 ggacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacagcctccc 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 402 ggacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacagcctccc 461 Query: 242 gccccacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgcccccaccct 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 462 gccccacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgcccccaccct 521 Query: 302 cgagaacaaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggtt 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 522 cgagaacaaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggtt 581 Query: 362 cctggtgcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggc 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 582 cctggtgcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggc 641 Query: 422 cgacccatggcacaacaccatcatccagaccatctccggccaataa 467 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 642 cgacccatggcacaacaccatcatccagaccatctccggccaataa 687
>gb|S68729.1| LHC Ib-20=light-harvesting complex I [Hordeum vulgare=barley, Prato, mRNA Chloroplast, 939 nt] Length = 939 Score = 773 bits (390), Expect = 0.0 Identities = 417/424 (98%), Gaps = 4/424 (0%) Strand = Plus / Plus Query: 158 ctacgtcgagatccggcggtggcaggacatcaagaacccgggctccgtcaaccaggaccc 217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 390 ctacgtcgagatccggcggtggcaggacatcaagaacccgggctccgtcaaccaggaccc 449 Query: 218 catcttcaagagctacagcctcccgccccacgagtgcggctaccccggcagcgtcttcaa 277 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 450 catcttcaagagctacagcctcccgccccacgagtgcggctaccccggcagagtcttcaa 509 Query: 278 ccccctcaacttcgcccccaccctcgagaacaaggagaaggagctcgccaacgggagact 337 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 510 ccccctcaacttcgccccc---ctcgagaacaaggagaaggagctcgccaacgggagact 566 Query: 338 ggccatgctggcgttcctggggttcctggtgcagcacaacgtgaccgggaaggggccgtt 397 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 567 ggccatgctggcgttcctggggttcctggtgcagcacaacgtgcacgggaaggggccgtt 626 Query: 398 cgagaacctgcagcagcacctggccgacccatggcacaacaccatcatccagaccatctc 457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 627 cgagaacctgcagcagcacctggccgacccatggcacaacaccatcatccagaccatctc 686 Query: 458 cggccaataaatccgtcgatttcaccgaccaaggaggtttcaggtggtctgaattattat 517 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 687 cggccaataaatccgtcgatttcaccgaccaaggaggttt-aggtggtctgaattattat 745 Query: 518 tttggggtgctgaggatgtacaaagtgtggaggagtaggtggcagtgcaaaaacgtgttg 577 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 746 tttggggtgctgaggatgtacaaagtgtggaggagtaggtggcagtgcaaaaacgtgttg 805 Query: 578 taat 581 |||| Sbjct: 806 taat 809 Score = 159 bits (80), Expect = 1e-35 Identities = 129/138 (93%), Gaps = 6/138 (4%) Strand = Plus / Plus Query: 3 gggcggtgggcgatgctgggggtggcggggnatgctgatcccggnngtgctgaccaag-c 61 |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| | Sbjct: 235 gggcggtgggcgatgctgggggtggcgggg-atgctgatcccggaggtgctgaccaaggc 293 Query: 62 ggggctgctgaacgcgcccgagtggt-acgac-gcc-ggcaaggagacctacttcgcctc 118 ||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||| Sbjct: 294 ggggctgatgaacgcgcccgagtggttacgactgccaggcaaggagacctacttcgcctc 353 Query: 119 ctcctccac-gctcttcg 135 ||||||||| |||||||| Sbjct: 354 ctcctccactgctcttcg 371
>ref|XM_482572.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1070 Score = 523 bits (264), Expect = e-145 Identities = 405/450 (90%), Gaps = 2/450 (0%) Strand = Plus / Plus Query: 3 gggcggtgggcgatgctgggggtggcggggnatgctgatcccggnngtgctgaccaagcg 62 |||||||||||||||||||||||||| ||| |||||| | || | |||||||| ||| Sbjct: 339 gggcggtgggcgatgctgggggtggccggg-atgctgctgcctgaggtgctgacgaagat 397 Query: 63 -gggctgctgaacgcgcccgagtggtacgacgccggcaaggagacctacttcgcctcctc 121 ||| || | ||||||| ||||||||||||||||||||| ||||||||||| || || Sbjct: 398 cgggttgatcgacgcgccgcagtggtacgacgccggcaaggccacctacttcgcgtcgtc 457 Query: 122 ctccacgctcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggca 181 || ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 458 gtcgacgctgttcgtcatcgagttcatcctgttccactacgtggagatccggcggtggca 517 Query: 182 ggacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacagcctccc 241 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 518 ggacatcaagaaccctggctgcgtcaaccaggaccccatcttcaagagctacagcctccc 577 Query: 242 gccccacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgcccccaccct 301 ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 578 gccgcacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgagcccaccct 637 Query: 302 cgagaacaaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggtt 361 |||| ||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| Sbjct: 638 cgaggccaaggagaaggagctcgccaacgggaggctggcgatgctggcgttcttggggtt 697 Query: 362 cctggtgcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggc 421 ||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||| | Sbjct: 698 cctggtgcagcacaacgtgacgcagaaggggcccttcgacaacctgctgcagcacctgtc 757 Query: 422 cgacccatggcacaacaccatcatccagac 451 ||||| ||||||||||||||||||||||| Sbjct: 758 tgacccgtggcacaacaccatcatccagac 787
>ref|XM_507585.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1138 Score = 523 bits (264), Expect = e-145 Identities = 405/450 (90%), Gaps = 2/450 (0%) Strand = Plus / Plus Query: 3 gggcggtgggcgatgctgggggtggcggggnatgctgatcccggnngtgctgaccaagcg 62 |||||||||||||||||||||||||| ||| |||||| | || | |||||||| ||| Sbjct: 343 gggcggtgggcgatgctgggggtggccggg-atgctgctgcctgaggtgctgacgaagat 401 Query: 63 -gggctgctgaacgcgcccgagtggtacgacgccggcaaggagacctacttcgcctcctc 121 ||| || | ||||||| ||||||||||||||||||||| ||||||||||| || || Sbjct: 402 cgggttgatcgacgcgccgcagtggtacgacgccggcaaggccacctacttcgcgtcgtc 461 Query: 122 ctccacgctcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggca 181 || ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 462 gtcgacgctgttcgtcatcgagttcatcctgttccactacgtggagatccggcggtggca 521 Query: 182 ggacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacagcctccc 241 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 522 ggacatcaagaaccctggctgcgtcaaccaggaccccatcttcaagagctacagcctccc 581 Query: 242 gccccacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgcccccaccct 301 ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 582 gccgcacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgagcccaccct 641 Query: 302 cgagaacaaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggtt 361 |||| ||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| Sbjct: 642 cgaggccaaggagaaggagctcgccaacgggaggctggcgatgctggcgttcttggggtt 701 Query: 362 cctggtgcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggc 421 ||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||| | Sbjct: 702 cctggtgcagcacaacgtgacgcagaaggggcccttcgacaacctgctgcagcacctgtc 761 Query: 422 cgacccatggcacaacaccatcatccagac 451 ||||| ||||||||||||||||||||||| Sbjct: 762 tgacccgtggcacaacaccatcatccagac 791
>ref|XM_507584.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1138 Score = 523 bits (264), Expect = e-145 Identities = 405/450 (90%), Gaps = 2/450 (0%) Strand = Plus / Plus Query: 3 gggcggtgggcgatgctgggggtggcggggnatgctgatcccggnngtgctgaccaagcg 62 |||||||||||||||||||||||||| ||| |||||| | || | |||||||| ||| Sbjct: 343 gggcggtgggcgatgctgggggtggccggg-atgctgctgcctgaggtgctgacgaagat 401 Query: 63 -gggctgctgaacgcgcccgagtggtacgacgccggcaaggagacctacttcgcctcctc 121 ||| || | ||||||| ||||||||||||||||||||| ||||||||||| || || Sbjct: 402 cgggttgatcgacgcgccgcagtggtacgacgccggcaaggccacctacttcgcgtcgtc 461 Query: 122 ctccacgctcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggca 181 || ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 462 gtcgacgctgttcgtcatcgagttcatcctgttccactacgtggagatccggcggtggca 521 Query: 182 ggacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacagcctccc 241 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 522 ggacatcaagaaccctggctgcgtcaaccaggaccccatcttcaagagctacagcctccc 581 Query: 242 gccccacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgcccccaccct 301 ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 582 gccgcacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgagcccaccct 641 Query: 302 cgagaacaaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggtt 361 |||| ||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| Sbjct: 642 cgaggccaaggagaaggagctcgccaacgggaggctggcgatgctggcgttcttggggtt 701 Query: 362 cctggtgcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggc 421 ||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||| | Sbjct: 702 cctggtgcagcacaacgtgacgcagaaggggcccttcgacaacctgctgcagcacctgtc 761 Query: 422 cgacccatggcacaacaccatcatccagac 451 ||||| ||||||||||||||||||||||| Sbjct: 762 tgacccgtggcacaacaccatcatccagac 791
>ref|XM_507583.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1178 Score = 523 bits (264), Expect = e-145 Identities = 405/450 (90%), Gaps = 2/450 (0%) Strand = Plus / Plus Query: 3 gggcggtgggcgatgctgggggtggcggggnatgctgatcccggnngtgctgaccaagcg 62 |||||||||||||||||||||||||| ||| |||||| | || | |||||||| ||| Sbjct: 340 gggcggtgggcgatgctgggggtggccggg-atgctgctgcctgaggtgctgacgaagat 398 Query: 63 -gggctgctgaacgcgcccgagtggtacgacgccggcaaggagacctacttcgcctcctc 121 ||| || | ||||||| ||||||||||||||||||||| ||||||||||| || || Sbjct: 399 cgggttgatcgacgcgccgcagtggtacgacgccggcaaggccacctacttcgcgtcgtc 458 Query: 122 ctccacgctcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggca 181 || ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 459 gtcgacgctgttcgtcatcgagttcatcctgttccactacgtggagatccggcggtggca 518 Query: 182 ggacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacagcctccc 241 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 519 ggacatcaagaaccctggctgcgtcaaccaggaccccatcttcaagagctacagcctccc 578 Query: 242 gccccacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgcccccaccct 301 ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 579 gccgcacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgagcccaccct 638 Query: 302 cgagaacaaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggtt 361 |||| ||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| Sbjct: 639 cgaggccaaggagaaggagctcgccaacgggaggctggcgatgctggcgttcttggggtt 698 Query: 362 cctggtgcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggc 421 ||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||| | Sbjct: 699 cctggtgcagcacaacgtgacgcagaaggggcccttcgacaacctgctgcagcacctgtc 758 Query: 422 cgacccatggcacaacaccatcatccagac 451 ||||| ||||||||||||||||||||||| Sbjct: 759 tgacccgtggcacaacaccatcatccagac 788
>ref|XM_507582.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1188 Score = 523 bits (264), Expect = e-145 Identities = 405/450 (90%), Gaps = 2/450 (0%) Strand = Plus / Plus Query: 3 gggcggtgggcgatgctgggggtggcggggnatgctgatcccggnngtgctgaccaagcg 62 |||||||||||||||||||||||||| ||| |||||| | || | |||||||| ||| Sbjct: 339 gggcggtgggcgatgctgggggtggccggg-atgctgctgcctgaggtgctgacgaagat 397 Query: 63 -gggctgctgaacgcgcccgagtggtacgacgccggcaaggagacctacttcgcctcctc 121 ||| || | ||||||| ||||||||||||||||||||| ||||||||||| || || Sbjct: 398 cgggttgatcgacgcgccgcagtggtacgacgccggcaaggccacctacttcgcgtcgtc 457 Query: 122 ctccacgctcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggca 181 || ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 458 gtcgacgctgttcgtcatcgagttcatcctgttccactacgtggagatccggcggtggca 517 Query: 182 ggacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacagcctccc 241 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 518 ggacatcaagaaccctggctgcgtcaaccaggaccccatcttcaagagctacagcctccc 577 Query: 242 gccccacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgcccccaccct 301 ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 578 gccgcacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgagcccaccct 637 Query: 302 cgagaacaaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggtt 361 |||| ||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| Sbjct: 638 cgaggccaaggagaaggagctcgccaacgggaggctggcgatgctggcgttcttggggtt 697 Query: 362 cctggtgcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggc 421 ||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||| | Sbjct: 698 cctggtgcagcacaacgtgacgcagaaggggcccttcgacaacctgctgcagcacctgtc 757 Query: 422 cgacccatggcacaacaccatcatccagac 451 ||||| ||||||||||||||||||||||| Sbjct: 758 tgacccgtggcacaacaccatcatccagac 787
>ref|XM_507239.2| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1191 Score = 523 bits (264), Expect = e-145 Identities = 405/450 (90%), Gaps = 2/450 (0%) Strand = Plus / Plus Query: 3 gggcggtgggcgatgctgggggtggcggggnatgctgatcccggnngtgctgaccaagcg 62 |||||||||||||||||||||||||| ||| |||||| | || | |||||||| ||| Sbjct: 342 gggcggtgggcgatgctgggggtggccggg-atgctgctgcctgaggtgctgacgaagat 400 Query: 63 -gggctgctgaacgcgcccgagtggtacgacgccggcaaggagacctacttcgcctcctc 121 ||| || | ||||||| ||||||||||||||||||||| ||||||||||| || || Sbjct: 401 cgggttgatcgacgcgccgcagtggtacgacgccggcaaggccacctacttcgcgtcgtc 460 Query: 122 ctccacgctcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggca 181 || ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 461 gtcgacgctgttcgtcatcgagttcatcctgttccactacgtggagatccggcggtggca 520 Query: 182 ggacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacagcctccc 241 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 521 ggacatcaagaaccctggctgcgtcaaccaggaccccatcttcaagagctacagcctccc 580 Query: 242 gccccacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgcccccaccct 301 ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 581 gccgcacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgagcccaccct 640 Query: 302 cgagaacaaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggtt 361 |||| ||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| Sbjct: 641 cgaggccaaggagaaggagctcgccaacgggaggctggcgatgctggcgttcttggggtt 700 Query: 362 cctggtgcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggc 421 ||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||| | Sbjct: 701 cctggtgcagcacaacgtgacgcagaaggggcccttcgacaacctgctgcagcacctgtc 760 Query: 422 cgacccatggcacaacaccatcatccagac 451 ||||| ||||||||||||||||||||||| Sbjct: 761 tgacccgtggcacaacaccatcatccagac 790
>dbj|AK104499.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-E04, full insert sequence Length = 1140 Score = 523 bits (264), Expect = e-145 Identities = 405/450 (90%), Gaps = 2/450 (0%) Strand = Plus / Plus Query: 3 gggcggtgggcgatgctgggggtggcggggnatgctgatcccggnngtgctgaccaagcg 62 |||||||||||||||||||||||||| ||| |||||| | || | |||||||| ||| Sbjct: 343 gggcggtgggcgatgctgggggtggccggg-atgctgctgcctgaggtgctgacgaagat 401 Query: 63 -gggctgctgaacgcgcccgagtggtacgacgccggcaaggagacctacttcgcctcctc 121 ||| || | ||||||| ||||||||||||||||||||| ||||||||||| || || Sbjct: 402 cgggttgatcgacgcgccgcagtggtacgacgccggcaaggccacctacttcgcgtcgtc 461 Query: 122 ctccacgctcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggca 181 || ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 462 gtcgacgctgttcgtcatcgagttcatcctgttccactacgtggagatccggcggtggca 521 Query: 182 ggacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacagcctccc 241 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 522 ggacatcaagaaccctggctgcgtcaaccaggaccccatcttcaagagctacagcctccc 581 Query: 242 gccccacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgcccccaccct 301 ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 582 gccgcacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgagcccaccct 641 Query: 302 cgagaacaaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggtt 361 |||| ||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| Sbjct: 642 cgaggccaaggagaaggagctcgccaacgggaggctggcgatgctggcgttcttggggtt 701 Query: 362 cctggtgcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggc 421 ||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||| | Sbjct: 702 cctggtgcagcacaacgtgacgcagaaggggcccttcgacaacctgctgcagcacctgtc 761 Query: 422 cgacccatggcacaacaccatcatccagac 451 ||||| ||||||||||||||||||||||| Sbjct: 762 tgacccgtggcacaacaccatcatccagac 791
>dbj|AK104416.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-G03, full insert sequence Length = 1177 Score = 523 bits (264), Expect = e-145 Identities = 405/450 (90%), Gaps = 2/450 (0%) Strand = Plus / Plus Query: 3 gggcggtgggcgatgctgggggtggcggggnatgctgatcccggnngtgctgaccaagcg 62 |||||||||||||||||||||||||| ||| |||||| | || | |||||||| ||| Sbjct: 340 gggcggtgggcgatgctgggggtggccggg-atgctgctgcctgaggtgctgacgaagat 398 Query: 63 -gggctgctgaacgcgcccgagtggtacgacgccggcaaggagacctacttcgcctcctc 121 ||| || | ||||||| ||||||||||||||||||||| ||||||||||| || || Sbjct: 399 cgggttgatcgacgcgccgcagtggtacgacgccggcaaggccacctacttcgcgtcgtc 458 Query: 122 ctccacgctcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggca 181 || ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 459 gtcgacgctgttcgtcatcgagttcatcctgttccactacgtggagatccggcggtggca 518 Query: 182 ggacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacagcctccc 241 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 519 ggacatcaagaaccctggctgcgtcaaccaggaccccatcttcaagagctacagcctccc 578 Query: 242 gccccacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgcccccaccct 301 ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 579 gccgcacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgagcccaccct 638 Query: 302 cgagaacaaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggtt 361 |||| ||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| Sbjct: 639 cgaggccaaggagaaggagctcgccaacgggaggctggcgatgctggcgttcttggggtt 698 Query: 362 cctggtgcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggc 421 ||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||| | Sbjct: 699 cctggtgcagcacaacgtgacgcagaaggggcccttcgacaacctgctgcagcacctgtc 758 Query: 422 cgacccatggcacaacaccatcatccagac 451 ||||| ||||||||||||||||||||||| Sbjct: 759 tgacccgtggcacaacaccatcatccagac 788
>dbj|AK067809.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121A03, full insert sequence Length = 1190 Score = 523 bits (264), Expect = e-145 Identities = 405/450 (90%), Gaps = 2/450 (0%) Strand = Plus / Plus Query: 3 gggcggtgggcgatgctgggggtggcggggnatgctgatcccggnngtgctgaccaagcg 62 |||||||||||||||||||||||||| ||| |||||| | || | |||||||| ||| Sbjct: 341 gggcggtgggcgatgctgggggtggccggg-atgctgctgcctgaggtgctgacgaagat 399 Query: 63 -gggctgctgaacgcgcccgagtggtacgacgccggcaaggagacctacttcgcctcctc 121 ||| || | ||||||| ||||||||||||||||||||| ||||||||||| || || Sbjct: 400 cgggttgatcgacgcgccgcagtggtacgacgccggcaaggccacctacttcgcgtcgtc 459 Query: 122 ctccacgctcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggca 181 || ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 460 gtcgacgctgttcgtcatcgagttcatcctgttccactacgtggagatccggcggtggca 519 Query: 182 ggacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacagcctccc 241 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 520 ggacatcaagaaccctggctgcgtcaaccaggaccccatcttcaagagctacagcctccc 579 Query: 242 gccccacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgcccccaccct 301 ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 580 gccgcacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgagcccaccct 639 Query: 302 cgagaacaaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggtt 361 |||| ||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| Sbjct: 640 cgaggccaaggagaaggagctcgccaacgggaggctggcgatgctggcgttcttggggtt 699 Query: 362 cctggtgcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggc 421 ||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||| | Sbjct: 700 cctggtgcagcacaacgtgacgcagaaggggcccttcgacaacctgctgcagcacctgtc 759 Query: 422 cgacccatggcacaacaccatcatccagac 451 ||||| ||||||||||||||||||||||| Sbjct: 760 tgacccgtggcacaacaccatcatccagac 789
>dbj|AK067712.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120A20, full insert sequence Length = 1138 Score = 523 bits (264), Expect = e-145 Identities = 405/450 (90%), Gaps = 2/450 (0%) Strand = Plus / Plus Query: 3 gggcggtgggcgatgctgggggtggcggggnatgctgatcccggnngtgctgaccaagcg 62 |||||||||||||||||||||||||| ||| |||||| | || | |||||||| ||| Sbjct: 343 gggcggtgggcgatgctgggggtggccggg-atgctgctgcctgaggtgctgacgaagat 401 Query: 63 -gggctgctgaacgcgcccgagtggtacgacgccggcaaggagacctacttcgcctcctc 121 ||| || | ||||||| ||||||||||||||||||||| ||||||||||| || || Sbjct: 402 cgggttgatcgacgcgccgcagtggtacgacgccggcaaggccacctacttcgcgtcgtc 461 Query: 122 ctccacgctcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggca 181 || ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 462 gtcgacgctgttcgtcatcgagttcatcctgttccactacgtggagatccggcggtggca 521 Query: 182 ggacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacagcctccc 241 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 522 ggacatcaagaaccctggctgcgtcaaccaggaccccatcttcaagagctacagcctccc 581 Query: 242 gccccacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgcccccaccct 301 ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 582 gccgcacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgagcccaccct 641 Query: 302 cgagaacaaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggtt 361 |||| ||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| Sbjct: 642 cgaggccaaggagaaggagctcgccaacgggaggctggcgatgctggcgttcttggggtt 701 Query: 362 cctggtgcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggc 421 ||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||| | Sbjct: 702 cctggtgcagcacaacgtgacgcagaaggggcccttcgacaacctgctgcagcacctgtc 761 Query: 422 cgacccatggcacaacaccatcatccagac 451 ||||| ||||||||||||||||||||||| Sbjct: 762 tgacccgtggcacaacaccatcatccagac 791
>dbj|AK060222.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F08, full insert sequence Length = 1078 Score = 523 bits (264), Expect = e-145 Identities = 405/450 (90%), Gaps = 2/450 (0%) Strand = Plus / Plus Query: 3 gggcggtgggcgatgctgggggtggcggggnatgctgatcccggnngtgctgaccaagcg 62 |||||||||||||||||||||||||| ||| |||||| | || | |||||||| ||| Sbjct: 348 gggcggtgggcgatgctgggggtggccggg-atgctgctgcctgaggtgctgacgaagat 406 Query: 63 -gggctgctgaacgcgcccgagtggtacgacgccggcaaggagacctacttcgcctcctc 121 ||| || | ||||||| ||||||||||||||||||||| ||||||||||| || || Sbjct: 407 cgggttgatcgacgcgccgcagtggtacgacgccggcaaggccacctacttcgcgtcgtc 466 Query: 122 ctccacgctcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggca 181 || ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 467 gtcgacgctgttcgtcatcgagttcatcctgttccactacgtggagatccggcggtggca 526 Query: 182 ggacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacagcctccc 241 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 527 ggacatcaagaaccctggctgcgtcaaccaggaccccatcttcaagagctacagcctccc 586 Query: 242 gccccacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgcccccaccct 301 ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 587 gccgcacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgagcccaccct 646 Query: 302 cgagaacaaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggtt 361 |||| ||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| Sbjct: 647 cgaggccaaggagaaggagctcgccaacgggaggctggcgatgctggcgttcttggggtt 706 Query: 362 cctggtgcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggc 421 ||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||| | Sbjct: 707 cctggtgcagcacaacgtgacgcagaaggggcccttcgacaacctgctgcagcacctgtc 766 Query: 422 cgacccatggcacaacaccatcatccagac 451 ||||| ||||||||||||||||||||||| Sbjct: 767 tgacccgtggcacaacaccatcatccagac 796
>dbj|AK103921.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B07, full insert sequence Length = 1193 Score = 500 bits (252), Expect = e-138 Identities = 402/450 (89%), Gaps = 2/450 (0%) Strand = Plus / Plus Query: 3 gggcggtgggcgatgctgggggtggcggggnatgctgatcccggnngtgctgaccaagcg 62 |||||||||||||||||||||||||| ||| |||||| | || | |||||||| ||| Sbjct: 344 gggcggtgggcgatgctgggggtggccggg-atgctgctgcctgaggtgctgacgaagat 402 Query: 63 -gggctgctgaacgcgcccgagtggtacgacgccggcaaggagacctacttcgcctcctc 121 ||| || | ||||||| ||||||||||| ||||||||| ||||||||||| || || Sbjct: 403 cgggttgatcgacgcgccacagtggtacgacaccggcaaggccacctacttcgcgtcgtc 462 Query: 122 ctccacgctcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggca 181 || ||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 463 gtcgacgctgttcgtcatcgagttcatcccgttccactacgtggagatccggcggtggca 522 Query: 182 ggacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacagcctccc 241 |||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 523 ggacatcaaggaccctggctgcgtcaaccaggaccccatcttcaagagctacagcctccc 582 Query: 242 gccccacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgcccccaccct 301 ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 583 gccgcacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgagcccaccct 642 Query: 302 cgagaacaaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggtt 361 |||| ||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| Sbjct: 643 cgaggccaaggagaaggagctcgccaacgggaggctggcgatgctggcgttcttggggtt 702 Query: 362 cctggtgcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggc 421 ||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||| | Sbjct: 703 cctggtgcagcacaacgtgacgcagaaggggcccttcgacaacctgctgcagcacctgtc 762 Query: 422 cgacccatggcacaacaccatcatccagac 451 ||||| ||||||||||||||||||||||| Sbjct: 763 tgacccgtggcacaacaccatcatccagac 792
>ref|XM_482573.1| Oryza sativa (japonica cultivar-group), mRNA Length = 576 Score = 498 bits (251), Expect = e-137 Identities = 399/445 (89%), Gaps = 3/445 (0%) Strand = Plus / Minus Query: 3 gggcggtgggcgatgctgggggtggcggggnatgctgatcccggnngtgctgaccaagcg 62 |||||||||||||||||||||||||| ||| |||||| | || | |||||||| ||| Sbjct: 444 gggcggtgggcgatgctgggggtggccggg-atgctgctgcctgaggtgctgacgaagat 386 Query: 63 -gggctgctgaacgcgcccgagtggtacgacgccggcaaggagacctacttcgcctcctc 121 ||| || | ||||||| ||||||||||||||||||||| ||||||||||| || || Sbjct: 385 cgggttgatcgacgcgccgcagtggtacgacgccggcaaggccacctacttcgcgtcgtc 326 Query: 122 ctccacgctcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggca 181 || ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 325 gtcgacgctgttcgtcatcgagttcatcctgttccactacgtggagatccggcggtggca 266 Query: 182 ggacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacagcctccc 241 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 265 ggacatcaagaaccctggctgcgtcaaccaggaccccatcttcaagagctacagcctccc 206 Query: 242 gccccacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgcccccaccct 301 ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 205 gccgcacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgagcccaccct 146 Query: 302 cgagaacaaggagaaggagctcgccaac-gggagactggccatgctggcgttcctggggt 360 |||| |||||||||||||||||||||| ||||| ||||| |||||||||||| |||||| Sbjct: 145 cgaggccaaggagaaggagctcgccaacagggaggctggcgatgctggcgttcttggggt 86 Query: 361 tcctggtgcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctgg 420 |||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||| Sbjct: 85 tcctggtgcagcacaacgtgacgcagaaggggcccttcgacaacctgctgcagcacctgt 26 Query: 421 ccgacccatggcacaacaccatcat 445 | ||||| ||||||||||||||||| Sbjct: 25 ctgacccgtggcacaacaccatcat 1
>gb|AY445626.2| Oryza sativa (japonica cultivar-group) chlorophyll a/b binding protein presusor mRNA, complete cds; nuclear gene for chloroplast product Length = 1128 Score = 494 bits (249), Expect = e-136 Identities = 404/451 (89%), Gaps = 4/451 (0%) Strand = Plus / Plus Query: 3 gggcggtgggcgatgctgggggtggcggggnatgctgatcccggnngtgctgaccaagcg 62 |||||||||||||||||||||||||| ||| |||||| | || | |||||||| ||| Sbjct: 319 gggcggtgggcgatgctgggggtggccggg-atgctgctgcctgaggtgctgacgaagat 377 Query: 63 -gggctgctgaacgcgcccgagtggtacgacgccggcaaggagacctacttcgcctcctc 121 ||| || | ||||||| ||||||||||||||||||||| ||||||||||| || || Sbjct: 378 cgggttgatcgacgcgccgcagtggtacgacgccggcaaggccacctacttcgcgtcgtc 437 Query: 122 ctccacgctcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggca 181 || ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 438 gtcgacgctgttcgtcatcgagttcatcctgttccactacgtggagatccggcggtggca 497 Query: 182 ggacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacagcctccc 241 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 498 ggacatcaagaaccctggctgcgtcaaccaggaccccatcttcaagagctacagcctccc 557 Query: 242 gccccacgagtgcggctaccccggcagcgtcttcaa-ccccctcaacttcgcccccaccc 300 ||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| Sbjct: 558 gccgcacgagtgcggcta-cccggcagcgtcttcaacccccctcaacttcgagcccaccc 616 Query: 301 tcgagaacaaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggt 360 ||||| ||||||||||||||||||||||||||| ||||| |||||||||||| |||||| Sbjct: 617 tcgaggccaaggagaaggagctcgccaacgggaggctggcgatgctggcgttcttggggt 676 Query: 361 tcctggtgcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctgg 420 |||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||| Sbjct: 677 tcctggtgcagcacaacgtgacgcagaaggggcccttcgacaacctgctgcagcacctgt 736 Query: 421 ccgacccatggcacaacaccatcatccagac 451 | ||||| ||||||||||||||||||||||| Sbjct: 737 ctgacccgtggcacaacaccatcatccagac 767
>gb|AF094775.1|AF094775 Oryza sativa chlorophyll a/b-binding protein presursor (Cab27) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1162 Score = 468 bits (236), Expect = e-128 Identities = 398/450 (88%), Gaps = 2/450 (0%) Strand = Plus / Plus Query: 3 gggcggtgggcgatgctgggggtggcggggnatgctgatcccggnngtgctgaccaagcg 62 |||||||||||||||||||||||||| ||| |||||| | || | |||||||| ||| Sbjct: 306 gggcggtgggcgatgctgggggtggccggg-atgctgctgcctgaggtgctgacgaagat 364 Query: 63 -gggctgctgaacgcgcccgagtggtacgacgccggcaaggagacctacttcgcctcctc 121 ||| || | ||||||| ||||||||||||||||||||| ||||||||||| || || Sbjct: 365 cgggttgatcgacgcgccgcagtggtacgacgccggcaaggccacctacttcgcgtcgtc 424 Query: 122 ctccacgctcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggca 181 |||||| |||||||||||||||||||| ||||||||||| |||||||| | |||||| Sbjct: 425 gaacacgctgttcgtcatcgagttcatcctgttccactacgtggagatccgccagtggca 484 Query: 182 ggacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacagcctccc 241 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| Sbjct: 485 ggacatcaagaaccctggctgcgtcaaccaggaccccatcttcaagagctacagactccc 544 Query: 242 gccccacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgcccccaccct 301 | ||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 545 cagcgacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgagcccaccct 604 Query: 302 cgagaacaaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggtt 361 |||| ||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| Sbjct: 605 cgaggccaaggagaaggagctcgccaacgggaggctggcgatgctggcgttcttggggtt 664 Query: 362 cctggtgcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggc 421 ||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||| | Sbjct: 665 cctggtgcagcacaacgtgacgcagaaggggcccttcgacaacctgctgcagcacctgtc 724 Query: 422 cgacccatggcacaacaccatcatccagac 451 ||||| ||||||||||||||||||||||| Sbjct: 725 tgacccgtggcacaacaccatcatccagac 754
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 381 bits (192), Expect = e-102 Identities = 297/330 (90%), Gaps = 2/330 (0%) Strand = Plus / Minus Query: 3 gggcggtgggcgatgctgggggtggcggggnatgctgatcccggnngtgctgaccaagcg 62 |||||||||||||||||||||||||| ||| |||||| | || | |||||||| ||| Sbjct: 21164979 gggcggtgggcgatgctgggggtggccggg-atgctgctgcctgaggtgctgacgaagat 21164921 Query: 63 -gggctgctgaacgcgcccgagtggtacgacgccggcaaggagacctacttcgcctcctc 121 ||| || | ||||||| ||||||||||||||||||||| ||||||||||| || || Sbjct: 21164920 cgggttgatcgacgcgccgcagtggtacgacgccggcaaggccacctacttcgcgtcgtc 21164861 Query: 122 ctccacgctcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggca 181 || ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 21164860 gtcgacgctgttcgtcatcgagttcatcctgttccactacgtggagatccggcggtggca 21164801 Query: 182 ggacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacagcctccc 241 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 21164800 ggacatcaagaaccctggctgcgtcaaccaggaccccatcttcaagagctacagcctccc 21164741 Query: 242 gccccacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgcccccaccct 301 ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 21164740 gccgcacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgagcccaccct 21164681 Query: 302 cgagaacaaggagaaggagctcgccaacgg 331 |||| |||||||||||||||||||||||| Sbjct: 21164680 cgaggccaaggagaaggagctcgccaacgg 21164651 Score = 147 bits (74), Expect = 5e-32 Identities = 110/122 (90%) Strand = Plus / Minus Query: 330 gggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgaccgggaag 389 ||||| ||||| |||||||||||| |||||||||||||||||||||||||||| |||| Sbjct: 21164559 gggaggctggcgatgctggcgttcttggggttcctggtgcagcacaacgtgacgcagaag 21164500 Query: 390 gggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccatcatccag 449 ||||| ||||| ||||||| |||||||||| | ||||| ||||||||||||||||||||| Sbjct: 21164499 gggcccttcgacaacctgctgcagcacctgtctgacccgtggcacaacaccatcatccag 21164440 Query: 450 ac 451 || Sbjct: 21164439 ac 21164438
>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0413H11 Length = 147655 Score = 381 bits (192), Expect = e-102 Identities = 297/330 (90%), Gaps = 2/330 (0%) Strand = Plus / Minus Query: 3 gggcggtgggcgatgctgggggtggcggggnatgctgatcccggnngtgctgaccaagcg 62 |||||||||||||||||||||||||| ||| |||||| | || | |||||||| ||| Sbjct: 136189 gggcggtgggcgatgctgggggtggccggg-atgctgctgcctgaggtgctgacgaagat 136131 Query: 63 -gggctgctgaacgcgcccgagtggtacgacgccggcaaggagacctacttcgcctcctc 121 ||| || | ||||||| ||||||||||||||||||||| ||||||||||| || || Sbjct: 136130 cgggttgatcgacgcgccgcagtggtacgacgccggcaaggccacctacttcgcgtcgtc 136071 Query: 122 ctccacgctcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggca 181 || ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 136070 gtcgacgctgttcgtcatcgagttcatcctgttccactacgtggagatccggcggtggca 136011 Query: 182 ggacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacagcctccc 241 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 136010 ggacatcaagaaccctggctgcgtcaaccaggaccccatcttcaagagctacagcctccc 135951 Query: 242 gccccacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgcccccaccct 301 ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 135950 gccgcacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgagcccaccct 135891 Query: 302 cgagaacaaggagaaggagctcgccaacgg 331 |||| |||||||||||||||||||||||| Sbjct: 135890 cgaggccaaggagaaggagctcgccaacgg 135861 Score = 147 bits (74), Expect = 5e-32 Identities = 110/122 (90%) Strand = Plus / Minus Query: 330 gggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgaccgggaag 389 ||||| ||||| |||||||||||| |||||||||||||||||||||||||||| |||| Sbjct: 135769 gggaggctggcgatgctggcgttcttggggttcctggtgcagcacaacgtgacgcagaag 135710 Query: 390 gggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccatcatccag 449 ||||| ||||| ||||||| |||||||||| | ||||| ||||||||||||||||||||| Sbjct: 135709 gggcccttcgacaacctgctgcagcacctgtctgacccgtggcacaacaccatcatccag 135650 Query: 450 ac 451 || Sbjct: 135649 ac 135648
>emb|Z17226.1|PSLHCA411 Pinus sylvestris Lhca4*1-1 gene encoding Lhca4 protein (type 4 protein of light-harvesting complex of photosystem I) Length = 1013 Score = 87.7 bits (44), Expect = 4e-14 Identities = 140/172 (81%) Strand = Plus / Plus Query: 271 tcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctcgccaacg 330 |||||||||| ||||||||| |||| || | ||| ||||||||||||||||||||| | Sbjct: 564 tcttcaaccctctcaacttctccccatccatggaggccaaggagaaggagctcgccaatg 623 Query: 331 ggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgaccgggaagg 390 ||||| |||| ||| | || |||||||| || | ||||| ||||| || || || |||| Sbjct: 624 ggagattggcaatgttagcattcctgggatttgtagtgcaacacaatgtaacaggaaagg 683 Query: 391 ggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccat 442 | |||||||| ||| ||| ||| || ||| | || ||||||||||||||||| Sbjct: 684 gcccgttcgacaacttgctgcaacatctgtctgatccatggcacaacaccat 735 Score = 52.0 bits (26), Expect = 0.002 Identities = 46/52 (88%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 7 ggtgggcgatgctgggggtggcggggnatgctgatcccggnngtgctgacca 58 |||||||||||||||| ||||||||| ||||| ||||||| ||||| |||| Sbjct: 300 ggtgggcgatgctgggcgtggcgggg-atgcttatcccggaagtgctaacca 350
>emb|Z16409.1|PSLHCA412 P.sylvestris Lhca4*1-2 mRNA encoding Lhca4 protein (type 4 protein of light-harvesting complex of photosystem I) (partial) Length = 968 Score = 87.7 bits (44), Expect = 4e-14 Identities = 140/172 (81%) Strand = Plus / Plus Query: 271 tcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctcgccaacg 330 |||||||||| ||||||||| |||| || | ||| ||||||||||||||||||||| | Sbjct: 541 tcttcaaccctctcaacttctccccatccatggaggccaaggagaaggagctcgccaatg 600 Query: 331 ggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgaccgggaagg 390 ||||| |||| ||| | || |||||||| || | ||||| ||||| || || || |||| Sbjct: 601 ggagattggcaatgttagcattcctgggatttgtagtgcaacacaatgtaacaggaaagg 660 Query: 391 ggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccat 442 | |||||||| ||| ||| ||| || ||| | || ||||||||||||||||| Sbjct: 661 gcccgttcgacaacttgctgcaacatctgtctgatccatggcacaacaccat 712 Score = 48.1 bits (24), Expect = 0.033 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 9 tgggcgatgctgggggtggcggggnatgctgatcccggnngtgctgacca 58 |||||||||||||| ||||||||| ||||| ||||||| ||||| |||| Sbjct: 279 tgggcgatgctgggcgtggcgggg-atgcttatcccggaagtgctaacca 327
>emb|X82497.1|NTCAG4 N.tabacum mRNA for light-harvesting Ch1 a/b binding protein Length = 726 Score = 85.7 bits (43), Expect = 2e-13 Identities = 96/114 (84%) Strand = Plus / Plus Query: 123 tccacgctcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcag 182 ||||| || ||||| |||||||||||| | |||||||||||||||||| | ||||||| Sbjct: 262 tccaccctgttcgtgatcgagttcatcttgttccactacgtcgagatcagaaggtggcaa 321 Query: 183 gacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacagc 236 |||||||||||||| || || ||||| | |||||||||||||| ||||||| Sbjct: 322 gacatcaagaacccaggaagtgttaaccaagnccccatcttcaagaactacagc 375 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 421 ccgacccatggcacaacaccat 442 |||||||||||||||||||||| Sbjct: 560 ccgacccatggcacaacaccat 581
>emb|X57706.1|LECAB11 L.esculentum DNA for CAB11 gene Length = 1393 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 366 gtgcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgac 425 ||||||||||| ||||| |||||||| || || || ||||| | ||||||||| | ||| Sbjct: 1110 gtgcagcacaatgtgactgggaagggaccttttgacaaccttctgcagcacctctctgac 1169 Query: 426 ccatggcacaacaccatcatcca 448 ||||||||||||||||||||||| Sbjct: 1170 ccatggcacaacaccatcatcca 1192 Score = 77.8 bits (39), Expect = 4e-11 Identities = 84/99 (84%) Strand = Plus / Plus Query: 138 atcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaacccg 197 |||||||||||| | |||||||||||||||||| | ||||||| ||||| |||||||| Sbjct: 805 atcgagttcatcttgttccactacgtcgagatcagaaggtggcaagacattaagaaccca 864 Query: 198 ggctccgtcaaccaggaccccatcttcaagagctacagc 236 || |||||||| ||||| |||||||||| ||||||| Sbjct: 865 ggaagtgtcaaccaagaccctatcttcaagaactacagc 903
>emb|AJ579711.2|BVU579711 Beta vulgaris mRNA for chloroplast chlorophyll a/b binding protein (cab11 gene) Length = 1062 Score = 71.9 bits (36), Expect = 2e-09 Identities = 117/144 (81%) Strand = Plus / Plus Query: 308 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 367 ||||||||||||||| || || |||||| |||| ||| |||| ||| | || ||| | || Sbjct: 714 caaggagaaggagcttgctaatgggagattggcaatgttggcattcttaggattcattgt 773 Query: 368 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 427 ||| ||||| ||||| || |||||||| || || ||||| | |||||| || | ||||| Sbjct: 774 gcaacacaatgtgactggaaaggggccttttgataaccttctgcagcatctatcagaccc 833 Query: 428 atggcacaacaccatcatccagac 451 ||||||||||||||| || ||||| Sbjct: 834 atggcacaacaccattattcagac 857 Score = 48.1 bits (24), Expect = 0.033 Identities = 48/56 (85%) Strand = Plus / Plus Query: 141 gagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaaccc 196 ||||||||| | |||||||| || ||||| || | |||||||||||||||||||| Sbjct: 547 gagttcatcttattccactatgtggagataaggagatggcaggacatcaagaaccc 602
>emb|AJ309094.1|PPI309094 Pinus pinaster mRNA for putative chlorophyll a/b-binding protein type 4 Length = 819 Score = 71.9 bits (36), Expect = 2e-09 Identities = 138/172 (80%) Strand = Plus / Plus Query: 271 tcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctcgccaacg 330 |||||||||| ||||||||| |||| || | ||| ||||||||||||||| ||||| | Sbjct: 572 tcttcaacccgctcaacttctccccatccatggaggccaaggagaaggagcttgccaatg 631 Query: 331 ggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgaccgggaagg 390 |||| |||| ||| | || |||||||| || | ||||| ||||| || || || |||| Sbjct: 632 ggaggttggcaatgttagcattcctgggatttgtagtgcaacacaatgtaacaggaaagg 691 Query: 391 ggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccat 442 | |||||||| ||| ||| ||| || ||| | || ||||||||||||||||| Sbjct: 692 gcccgttcgacaacttgctgcaacatctgtctgatccatggcacaacaccat 743 Score = 42.1 bits (21), Expect = 2.0 Identities = 43/50 (86%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 9 tgggcgatgctgggggtggcggggnatgctgatcccggnngtgctgacca 58 |||||||||||||| ||||||||| |||| ||||||| ||||| |||| Sbjct: 310 tgggcgatgctgggcgtggcgggg-atgcntatcccggaagtgctaacca 358
>gb|BC002118.1| Mus musculus cDNA clone MGC:6623 IMAGE:3491066, complete cds Length = 1008 Score = 71.9 bits (36), Expect = 2e-09 Identities = 117/144 (81%) Strand = Plus / Plus Query: 308 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 367 ||||||||||||||| || || |||||| |||| ||| |||| ||| | || ||| | || Sbjct: 630 caaggagaaggagcttgctaatgggagattggcaatgttggcattcttaggattcattgt 689 Query: 368 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 427 ||| ||||| ||||| || |||||||| || || ||||| | |||||| || | ||||| Sbjct: 690 gcaacacaatgtgactggaaaggggccttttgataaccttctgcagcatctatcagaccc 749 Query: 428 atggcacaacaccatcatccagac 451 ||||||||||||||| || ||||| Sbjct: 750 atggcacaacaccattattcagac 773 Score = 48.1 bits (24), Expect = 0.033 Identities = 48/56 (85%) Strand = Plus / Plus Query: 141 gagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaaccc 196 ||||||||| | |||||||| || ||||| || | |||||||||||||||||||| Sbjct: 463 gagttcatcttattccactatgtggagataaggagatggcaggacatcaagaaccc 518
>gb|AY233205.1| Vitis vinifera chlorophyll a/b-binding protein (Lhca1) mRNA, partial cds; nuclear gene for chloroplast product Length = 476 Score = 65.9 bits (33), Expect = 1e-07 Identities = 213/273 (78%) Strand = Plus / Plus Query: 176 gtggcaggacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacag 235 ||||||||||||||||||||| || || |||||||| ||||| ||||||| |||||| Sbjct: 1 gtggcaggacatcaagaacccaggaagtgtgaaccaggatcccattttcaagaactacag 60 Query: 236 cctcccgccccacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgcccc 295 | | || ||| | ||| || |||||||| | | ||||||||||| ||||| || || Sbjct: 61 cttacctcccaatgaggtgggttaccccggtggtattttcaaccccctgaactttgcacc 120 Query: 296 caccctcgagaacaaggagaaggagctcgccaacgggagactggccatgctggcgttcct 355 || ||| |||||| ||||| || || ||||||||| | || ||| |||| ||||| Sbjct: 121 aactgaggaggccaaggaaaaggaacttgctaacgggagattagcaatgttggcattcct 180 Query: 356 ggggttcctggtgcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagca 415 |||||| | || || ||||||||||| || || ||||| || || ||||| |||||| Sbjct: 181 ggggtttattgttcaacacaacgtgactggaaaagggccatttgacaacctcttgcagca 240 Query: 416 cctggccgacccatggcacaacaccatcatcca 448 | | | |||||||||||||||||||||||||| Sbjct: 241 catctcagacccatggcacaacaccatcatcca 273
>gb|AF359128.1| Pinus sylvestris plus tree E1101 LHC I type IV chlorophyll binding protein (LHCA4) gene, partial cds; nuclear gene for chloroplast product Length = 498 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 271 tcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctcgccaa 328 |||||||||| ||||||||| |||| || | ||| ||||||||||||||||||||| Sbjct: 261 tcttcaaccctctcaacttctccccatccatggaggccaaggagaaggagctcgccaa 318
>gb|AF359127.1| Pinus sylvestris plus tree E635C LHC I type IV chlorophyll binding protein (LHCA4) gene, partial cds; nuclear gene for chloroplast product Length = 521 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 271 tcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctcgccaa 328 |||||||||| ||||||||| |||| || | ||| ||||||||||||||||||||| Sbjct: 261 tcttcaaccctctcaacttctccccatccatggaggccaaggagaaggagctcgccaa 318
>dbj|AB122117.1| Chlamydomonas reinhardtii LhcI-4 gene for light-harvesting chlorophyll-a/b protein of photosystem I, complete cds Length = 1970 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 69 ctgaacgcgcccgagtggtacgacgccggcaagg 102 ||||||| ||| |||||||||||||||||||||| Sbjct: 835 ctgaacgtgcctgagtggtacgacgccggcaagg 868
>ref|NM_114615.3| Arabidopsis thaliana CAB4; chlorophyll binding AT3G47470 (CAB4) mRNA, complete cds Length = 1266 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 132 ttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaag 191 ||||| ||||||||||| | || || ||||| |||||| | |||||||| ||||||||| Sbjct: 687 ttcgtgatcgagttcatattgtttcattacgttgagatcagacggtggcaagacatcaag 746 Query: 192 aaccc 196 ||||| Sbjct: 747 aaccc 751 Score = 48.1 bits (24), Expect = 0.033 Identities = 105/132 (79%) Strand = Plus / Plus Query: 308 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 367 ||||||||| ||||| || |||||||| |||| ||| |||| ||| | ||||| |||| Sbjct: 863 caaggagaaagagctagcaaacgggaggttggcgatgttggcattcttagggtttgtggt 922 Query: 368 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 427 || ||||| ||||| || || || || || ||||| ||| ||||||| || | ||||| Sbjct: 923 tcaacacaatgtgactggaaaaggaccatttgagaatctgttgcagcacttgtctgaccc 982 Query: 428 atggcacaacac 439 |||||||||||| Sbjct: 983 atggcacaacac 994
>gb|BT000093.1| Arabidopsis thaliana chlorophyll A-B binding protein 4 precursor homolog (At3g47470) mRNA, complete cds Length = 891 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 132 ttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaag 191 ||||| ||||||||||| | || || ||||| |||||| | |||||||| ||||||||| Sbjct: 427 ttcgtgatcgagttcatattgtttcattacgttgagatcagacggtggcaagacatcaag 486 Query: 192 aaccc 196 ||||| Sbjct: 487 aaccc 491 Score = 48.1 bits (24), Expect = 0.033 Identities = 105/132 (79%) Strand = Plus / Plus Query: 308 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 367 ||||||||| ||||| || |||||||| |||| ||| |||| ||| | ||||| |||| Sbjct: 603 caaggagaaagagctagcaaacgggaggttggcgatgttggcattcttagggtttgtggt 662 Query: 368 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 427 || ||||| ||||| || || || || || ||||| ||| ||||||| || | ||||| Sbjct: 663 tcaacacaatgtgactggaaaaggaccatttgagaatctgttgcagcacttgtctgaccc 722 Query: 428 atggcacaacac 439 |||||||||||| Sbjct: 723 atggcacaacac 734
>emb|AL132955.1|ATF1P2 Arabidopsis thaliana DNA chromosome 3, BAC clone F1P2 Length = 101154 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Minus Query: 132 ttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaag 191 ||||| ||||||||||| | || || ||||| |||||| | |||||||| ||||||||| Sbjct: 7389 ttcgtgatcgagttcatattgtttcattacgttgagatcagacggtggcaagacatcaag 7330 Query: 192 aaccc 196 ||||| Sbjct: 7329 aaccc 7325
>gb|AY093080.1| Arabidopsis thaliana chlorophyll A-B binding protein 4 precursor homolog (At3g47470) mRNA, complete cds Length = 1055 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 132 ttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaag 191 ||||| ||||||||||| | || || ||||| |||||| | |||||||| ||||||||| Sbjct: 527 ttcgtgatcgagttcatattgtttcattacgttgagatcagacggtggcaagacatcaag 586 Query: 192 aaccc 196 ||||| Sbjct: 587 aaccc 591 Score = 48.1 bits (24), Expect = 0.033 Identities = 105/132 (79%) Strand = Plus / Plus Query: 308 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 367 ||||||||| ||||| || |||||||| |||| ||| |||| ||| | ||||| |||| Sbjct: 703 caaggagaaagagctagcaaacgggaggttggcgatgttggcattcttagggtttgtggt 762 Query: 368 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 427 || ||||| ||||| || || || || || ||||| ||| ||||||| || | ||||| Sbjct: 763 tcaacacaatgtgactggaaaaggaccatttgagaatctgttgcagcacttgtctgaccc 822 Query: 428 atggcacaacac 439 |||||||||||| Sbjct: 823 atggcacaacac 834
>gb|AF325012.2|AF325012 Arabidopsis thaliana AT3g47470 (AT3g47470/F1P2_20) mRNA, complete cds Length = 715 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 132 ttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaag 191 ||||| ||||||||||| | || || ||||| |||||| | |||||||| ||||||||| Sbjct: 144 ttcgtgatcgagttcatattgtttcattacgttgagatcagacggtggcaagacatcaag 203 Query: 192 aaccc 196 ||||| Sbjct: 204 aaccc 208 Score = 48.1 bits (24), Expect = 0.033 Identities = 105/132 (79%) Strand = Plus / Plus Query: 308 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 367 ||||||||| ||||| || |||||||| |||| ||| |||| ||| | ||||| |||| Sbjct: 320 caaggagaaagagctagcaaacgggaggttggcgatgttggcattcttagggtttgtggt 379 Query: 368 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 427 || ||||| ||||| || || || || || ||||| ||| ||||||| || | ||||| Sbjct: 380 tcaacacaatgtgactggaaaaggaccatttgagaatctgttgcagcacttgtctgaccc 439 Query: 428 atggcacaacac 439 |||||||||||| Sbjct: 440 atggcacaacac 451
>emb|BX826089.1|CNS0A6C9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL84ZA10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 973 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 132 ttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaag 191 ||||| ||||||||||| | || || ||||| |||||| | |||||||| ||||||||| Sbjct: 517 ttcgtgatcgagttcatattgtttcattacgttgagatcagacggtggcaagacatcaag 576 Query: 192 aaccc 196 ||||| Sbjct: 577 aaccc 581 Score = 48.1 bits (24), Expect = 0.033 Identities = 105/132 (79%) Strand = Plus / Plus Query: 308 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 367 ||||||||| ||||| || |||||||| |||| ||| |||| ||| | ||||| |||| Sbjct: 693 caaggagaaagagctagcaaacgggaggttggcgatgttggcattcttagggtttgtggt 752 Query: 368 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 427 || ||||| ||||| || || || || || ||||| ||| ||||||| || | ||||| Sbjct: 753 tcaacacaatgtgactggaaaaggaccatttgagaatctgttgcagcacttgtctgaccc 812 Query: 428 atggcacaacac 439 |||||||||||| Sbjct: 813 atggcacaacac 824
>emb|BX825536.1|CNS0A6EC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL42ZH07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1035 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 132 ttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaag 191 ||||| ||||||||||| | || || ||||| |||||| | |||||||| ||||||||| Sbjct: 514 ttcgtgatcgagttcatattgtttcattacgttgagatcagacggtggcaagacatcaag 573 Query: 192 aaccc 196 ||||| Sbjct: 574 aaccc 578
>emb|BX823268.1|CNS0A6MH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS18ZF07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1046 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 132 ttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaag 191 ||||| ||||||||||| | || || ||||| |||||| | |||||||| ||||||||| Sbjct: 501 ttcgtgatcgagttcatattgtttcattacgttgagatcagacggtggcaagacatcaag 560 Query: 192 aaccc 196 ||||| Sbjct: 561 aaccc 565 Score = 48.1 bits (24), Expect = 0.033 Identities = 105/132 (79%) Strand = Plus / Plus Query: 308 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 367 ||||||||| ||||| || |||||||| |||| ||| |||| ||| | ||||| |||| Sbjct: 677 caaggagaaagagctagcaaacgggaggttggcgatgttggcattcttagggtttgtggt 736 Query: 368 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 427 || ||||| ||||| || || || || || ||||| ||| ||||||| || | ||||| Sbjct: 737 tcaacacaatgtgactggaaaaggaccatttgagaatctgttgcagcacttgtctgaccc 796 Query: 428 atggcacaacac 439 |||||||||||| Sbjct: 797 atggcacaacac 808
>gb|AY086470.1| Arabidopsis thaliana clone 2531 mRNA, complete sequence Length = 1267 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 132 ttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaag 191 ||||| ||||||||||| | || || ||||| |||||| | |||||||| ||||||||| Sbjct: 688 ttcgtgatcgagttcatattgtttcattacgttgagatcagacggtggcaagacatcaag 747 Query: 192 aaccc 196 ||||| Sbjct: 748 aaccc 752 Score = 48.1 bits (24), Expect = 0.033 Identities = 105/132 (79%) Strand = Plus / Plus Query: 308 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 367 ||||||||| ||||| || |||||||| |||| ||| |||| ||| | ||||| |||| Sbjct: 864 caaggagaaagagctagcaaacgggaggttggcgatgttggcattcttagggtttgtggt 923 Query: 368 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 427 || ||||| ||||| || || || || || ||||| ||| ||||||| || | ||||| Sbjct: 924 tcaacacaatgtgactggaaaaggaccatttgagaatctgttgcagcacttgtctgaccc 983 Query: 428 atggcacaacac 439 |||||||||||| Sbjct: 984 atggcacaacac 995
>gb|M63931.1|ATHCABM Arabidopsis thaliana light-harvesting chlorophyll a/b-binding protein (Cab4) mRNA, complete cds Length = 1050 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 132 ttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaag 191 ||||| ||||||||||| | || || ||||| |||||| | |||||||| ||||||||| Sbjct: 497 ttcgtgatcgagttcatattgtttcattacgttgagatcagacggtggcaagacatcaag 556 Query: 192 aaccc 196 ||||| Sbjct: 557 aaccc 561 Score = 48.1 bits (24), Expect = 0.033 Identities = 105/132 (79%) Strand = Plus / Plus Query: 308 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 367 ||||||||| ||||| || |||||||| |||| ||| |||| ||| | ||||| |||| Sbjct: 673 caaggagaaagagctagcaaacgggaggttggcgatgttggcattcttagggtttgtggt 732 Query: 368 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 427 || ||||| ||||| || || || || || ||||| ||| ||||||| || | ||||| Sbjct: 733 tcaacacaatgtgactggaaaaggaccatttgagaatctgttgcagcacttgtctgaccc 792 Query: 428 atggcacaacac 439 |||||||||||| Sbjct: 793 atggcacaacac 804
>gb|BT015429.1| Arabidopsis thaliana At3g47470 mRNA sequence Length = 405 Score = 48.1 bits (24), Expect = 0.033 Identities = 105/132 (79%) Strand = Plus / Plus Query: 308 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 367 ||||||||| ||||| || |||||||| |||| ||| |||| ||| | ||||| |||| Sbjct: 252 caaggagaaagagctagcaaacgggaggttggcgatgttggcattcttagggtttgtggt 311 Query: 368 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 427 || ||||| ||||| || || || || || ||||| ||| ||||||| || | ||||| Sbjct: 312 tcaacacaatgtgactggaaaaggaccatttgagaatctgttgcagcacttgtctgaccc 371 Query: 428 atggcacaacac 439 |||||||||||| Sbjct: 372 atggcacaacac 383 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Plus Query: 138 atcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaaccc 196 ||||||||||| | || || ||||| |||||| | |||||||| |||||||||||||| Sbjct: 82 atcgagttcatattgtttcattacgttgagatcagacggtggcaagacatcaagaaccc 140
>emb|BX824775.1|CNS0A6UB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH71ZB01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 508 Score = 48.1 bits (24), Expect = 0.033 Identities = 105/132 (79%) Strand = Plus / Plus Query: 308 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 367 ||||||||| ||||| || |||||||| |||| ||| |||| ||| | ||||| |||| Sbjct: 166 caaggagaaagagctagcaaacgggaggttggcgatgttggcattcttagggtttgtggt 225 Query: 368 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 427 || ||||| ||||| || || || || || ||||| ||| ||||||| || | ||||| Sbjct: 226 tcaacacaatgtgactggaaaaggaccatttgagaatctgttgcagcacttgtctgaccc 285 Query: 428 atggcacaacac 439 |||||||||||| Sbjct: 286 atggcacaacac 297 Score = 44.1 bits (22), Expect = 0.51 Identities = 34/38 (89%) Strand = Plus / Plus Query: 159 tacgtcgagatccggcggtggcaggacatcaagaaccc 196 ||||| |||||| | |||||||| |||||||||||||| Sbjct: 17 tacgttgagatcagacggtggcaagacatcaagaaccc 54
>gb|AY109341.1| Zea mays CL4601_3 mRNA sequence Length = 1460 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 429 tggcacaacaccatcatccagacc 452 |||||||||||||||||||||||| Sbjct: 303 tggcacaacaccatcatccagacc 280
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 6 cggtgggcgatgctgggggtggcgggg 32 |||||||||||||||| |||||||||| Sbjct: 16234259 cggtgggcgatgctggcggtggcgggg 16234285
>gb|AF110786.1|AF110786 Volvox carteri f. nagariensis clone G18 light harvesting complex a protein (lhca) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1047 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 68 gctgaacgcgcccgagtggtacgacgccggcaagg 102 |||||||| ||| |||||||||||||| ||||||| Sbjct: 346 gctgaacgtgccggagtggtacgacgctggcaagg 380
>dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1344_B01 Length = 170912 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 6 cggtgggcgatgctgggggtggcgggg 32 |||||||||||||||| |||||||||| Sbjct: 50775 cggtgggcgatgctggcggtggcgggg 50801
>dbj|AP005424.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0556H01 Length = 149800 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 6 cggtgggcgatgctgggggtggcgggg 32 |||||||||||||||| |||||||||| Sbjct: 138860 cggtgggcgatgctggcggtggcgggg 138886
>gb|AC019013.2|AC019013 Genomic Sequence For Arabidopsis thaliana, Clone T5E15, Chromosome V, complete sequence Length = 114056 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 534 tgtacaaagtgtggaggagtagg 556 ||||||||||||||||||||||| Sbjct: 37504 tgtacaaagtgtggaggagtagg 37526
>dbj|AK067780.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114F21, full insert sequence Length = 919 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 6 cggtgggcgatgctgggggtggcgggg 32 |||||||||||||||| |||||||||| Sbjct: 382 cggtgggcgatgctggcggtggcgggg 408
>ref|XM_747159.1| Aspergillus fumigatus Af293 septin (Afu1g08850) partial mRNA Length = 1041 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 125 cacgctcttcgtcatcgagttc 146 |||||||||||||||||||||| Sbjct: 682 cacgctcttcgtcatcgagttc 661
>gb|AC007852.9| Drosophila melanogaster clone BACR33A10, complete sequence Length = 186333 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 542 gtgtggaggagtaggtggcag 562 ||||||||||||||||||||| Sbjct: 11756 gtgtggaggagtaggtggcag 11776
>gb|AC007588.5| Drosophila melanogaster clone BACR30O03, complete sequence Length = 165177 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 542 gtgtggaggagtaggtggcag 562 ||||||||||||||||||||| Sbjct: 60677 gtgtggaggagtaggtggcag 60657
>emb|BX571658.1| Wolinella succinogenes, complete genome; segment 2/7 Length = 346792 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 102 gagacctacttcgcctcctcctcca 126 ||||||| ||||||||||||||||| Sbjct: 323434 gagaccttcttcgcctcctcctcca 323410
>gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0016G17, complete sequence Length = 141041 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 acttcgcctcctcctccacgc 129 ||||||||||||||||||||| Sbjct: 116484 acttcgcctcctcctccacgc 116464
>gb|AC159237.2| Mus musculus BAC clone RP24-464G10 from chromosome 12, complete sequence Length = 222209 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 509 aattattattttggggtgctg 529 ||||||||||||||||||||| Sbjct: 97929 aattattattttggggtgctg 97909
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 acttcgcctcctcctccacgc 129 ||||||||||||||||||||| Sbjct: 15262785 acttcgcctcctcctccacgc 15262765
>ref|XM_392275.2| PREDICTED: Apis mellifera similar to ENSANGP00000012777 (LOC408740), mRNA Length = 1629 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 296 caccctcgagaacaaggagaa 316 ||||||||||||||||||||| Sbjct: 1002 caccctcgagaacaaggagaa 1022
>gb|AF276663.1|AF276663 Drosophila melanogaster comb (cg) gene, complete cds, alternatively spliced Length = 9504 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 542 gtgtggaggagtaggtggcag 562 ||||||||||||||||||||| Sbjct: 4324 gtgtggaggagtaggtggcag 4304
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 435 aacaccatcatccagaccatc 455 ||||||||||||||||||||| Sbjct: 631582 aacaccatcatccagaccatc 631602
>gb|AY107739.1| Zea mays PCO089350 mRNA sequence Length = 645 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cagcctcccgccccacgagtgcggc 257 |||||||| |||||||||||||||| Sbjct: 286 cagcctccagccccacgagtgcggc 310
>gb|AE003815.4| Drosophila melanogaster chromosome 2R, section 35 of 73 of the complete sequence Length = 229685 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 542 gtgtggaggagtaggtggcag 562 ||||||||||||||||||||| Sbjct: 31538 gtgtggaggagtaggtggcag 31518
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 acttcgcctcctcctccacgc 129 ||||||||||||||||||||| Sbjct: 15271026 acttcgcctcctcctccacgc 15271006
>gb|AC127582.4| Mus musculus BAC clone RP24-89J3 from 12, complete sequence Length = 217949 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 509 aattattattttggggtgctg 529 ||||||||||||||||||||| Sbjct: 9829 aattattattttggggtgctg 9849
>ref|NM_188089.1| Oryza sativa (japonica cultivar-group), Ozsa8521 predicted mRNA Length = 1089 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 432 cacaacaccatcatccagaccatctccg 459 |||||| ||||| ||||||||||||||| Sbjct: 982 cacaacgccatcctccagaccatctccg 1009
>ref|XM_514527.1| PREDICTED: Pan troglodytes ribosome binding protein 1 (LOC458109), mRNA Length = 7485 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 cctcctcctccacgctcttc 134 |||||||||||||||||||| Sbjct: 5809 cctcctcctccacgctcttc 5790
>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete sequence Length = 1019846 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 caaggagaaggagctcgcca 327 |||||||||||||||||||| Sbjct: 363839 caaggagaaggagctcgcca 363820
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 tcgcctcctcctccacgctc 131 |||||||||||||||||||| Sbjct: 669660 tcgcctcctcctccacgctc 669641
>gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genomic sequence, complete sequence Length = 139771 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 gcggtgggcgatgctggggg 24 |||||||||||||||||||| Sbjct: 79464 gcggtgggcgatgctggggg 79445
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 gggggcggtgggcgatgctggggg 24 |||||||||||||| ||||||||| Sbjct: 1885366 gggggcggtgggcggtgctggggg 1885343
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 gcggtgggcgatgctggggg 24 |||||||||||||||||||| Sbjct: 21808352 gcggtgggcgatgctggggg 21808371
>emb|AL133520.5| Human DNA sequence from clone RP1-101A2 on chromosome 20, complete sequence Length = 47325 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 351 ttcctggggttcctggtgcagcac 374 ||||||||||||||||||| |||| Sbjct: 32848 ttcctggggttcctggtgctgcac 32871
>ref|XM_567806.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNK01210) partial mRNA Length = 1432 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 caaggagaaggagctcgcca 327 |||||||||||||||||||| Sbjct: 1077 caaggagaaggagctcgcca 1096
>ref|XM_569322.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNB03330) partial mRNA Length = 3369 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 1 gggggcggtgggcgatgctgggggtggcgggg 32 |||||||| ||| | ||||||||||||||||| Sbjct: 119 gggggcggggggtgctgctgggggtggcgggg 88
>gb|BC020482.1| Homo sapiens ribosome binding protein 1 homolog 180kDa (dog), mRNA (cDNA clone IMAGE:3919185) Length = 1638 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 cctcctcctccacgctcttc 134 |||||||||||||||||||| Sbjct: 1460 cctcctcctccacgctcttc 1441
>gb|AC024608.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-333I24, complete sequence Length = 215829 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 attttggggtgctgaggatg 535 |||||||||||||||||||| Sbjct: 132183 attttggggtgctgaggatg 132164
>gb|BC000099.2| Homo sapiens ribosome binding protein 1 homolog 180kDa (dog), mRNA (cDNA clone IMAGE:3509994), partial cds Length = 2069 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 cctcctcctccacgctcttc 134 |||||||||||||||||||| Sbjct: 1193 cctcctcctccacgctcttc 1174
>ref|XM_535195.2| PREDICTED: Canis familiaris similar to inter-alpha globulin inhibitor H2 polypeptide (LOC478011), mRNA Length = 2941 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 caacaccatcatccagacca 453 |||||||||||||||||||| Sbjct: 358 caacaccatcatccagacca 377
>gb|BC080526.1| Homo sapiens ribosome binding protein 1 homolog 180kDa (dog), mRNA (cDNA clone IMAGE:4561660) Length = 1951 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 cctcctcctccacgctcttc 134 |||||||||||||||||||| Sbjct: 1319 cctcctcctccacgctcttc 1300
>emb|AL139016.8| Human DNA sequence from clone RP4-658C17 on chromosome 1p11.1-13.3, complete sequence Length = 100643 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 cctcctcctccacgctcttc 134 |||||||||||||||||||| Sbjct: 28397 cctcctcctccacgctcttc 28378
>emb|AL132765.38|HSA462D18 Human DNA sequence from clone RP11-462D18 on chromosome 20 Contains the 5' end of the BFSP1 gene for beaded filament structural protein 1 (filensin), the DSTN gene for destrin (actin depolymerizing factor ADF), a ras-like pseudogene, the RRBP1 gene for ribosome binding protein 1 (dog 180 kDa homolog), the 5' end of the C20orf179 gene for chromosome 20 open reading frame 179 and two CpG islands, complete sequence Length = 166001 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 cctcctcctccacgctcttc 134 |||||||||||||||||||| Sbjct: 67121 cctcctcctccacgctcttc 67140
>emb|AL833822.1|HSM805097 Homo sapiens mRNA; cDNA DKFZp586A1420 (from clone DKFZp586A1420) Length = 2400 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 cctcctcctccacgctcttc 134 |||||||||||||||||||| Sbjct: 2223 cctcctcctccacgctcttc 2204
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete sequence Length = 1632307 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 1 gggggcggtgggcgatgctgggggtggcgggg 32 |||||||| ||| | ||||||||||||||||| Sbjct: 1004256 gggggcggggggtgctgctgggggtggcgggg 1004287
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 acaacaccatcatccagacc 452 |||||||||||||||||||| Sbjct: 172980 acaacaccatcatccagacc 172999
>gb|AF448525.1| Mytilus galloprovincialis precollagen-P mRNA, complete cds Length = 2781 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 ctggcgttcctggggttcctggtg 368 |||| ||||||||||||||||||| Sbjct: 1089 ctggtgttcctggggttcctggtg 1066
>emb|BX469902.7| Zebrafish DNA sequence from clone CH211-277G23 in linkage group 9, complete sequence Length = 179135 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 tgaattattattttggggtg 526 |||||||||||||||||||| Sbjct: 16922 tgaattattattttggggtg 16903
>ref|NM_004587.1| Homo sapiens ribosome binding protein 1 homolog 180kDa (dog) (RRBP1), mRNA Length = 3106 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 cctcctcctccacgctcttc 134 |||||||||||||||||||| Sbjct: 2228 cctcctcctccacgctcttc 2209
>dbj|AK093465.1| Homo sapiens cDNA FLJ36146 fis, clone TESTI2025117, highly similar to Homo sapiens ES/130 mRNA Length = 1648 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 cctcctcctccacgctcttc 134 |||||||||||||||||||| Sbjct: 793 cctcctcctccacgctcttc 774
>dbj|AB189167.1| Oryza sativa (japonica cultivar-group) OsIDHa mRNA for NAD-dependent isocitrate dehydrogenase a, complete cds Length = 1424 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 432 cacaacaccatcatccagaccatctccg 459 |||||| ||||| ||||||||||||||| Sbjct: 1108 cacaacgccatcctccagaccatctccg 1135
>gb|S68728.1| LHC Ib-21=light-harvesting complex I [Hordeum vulgare=barley, Prato, mRNA Chloroplast, 878 nt] Length = 878 Score = 40.1 bits (20), Expect = 8.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 327 aacgggagactggccatgctggcgttcctggggttc 362 |||||| | ||||| |||||||||||| |||||||| Sbjct: 508 aacgggcggctggcgatgctggcgttcgtggggttc 543
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 ctgcagcagcacctggccga 424 |||||||||||||||||||| Sbjct: 665722 ctgcagcagcacctggccga 665703
>ref|XM_393975.2| PREDICTED: Apis mellifera hypothetical LOC410496 (LOC410496), mRNA Length = 4959 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 cttcgcctcctcctccacgctctt 133 |||| ||||||||||||||||||| Sbjct: 1341 cttctcctcctcctccacgctctt 1318
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 gcggtgggcgatgctggggg 24 |||||||||||||||||||| Sbjct: 21801381 gcggtgggcgatgctggggg 21801400
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 432 cacaacaccatcatccagaccatctccg 459 |||||| ||||| ||||||||||||||| Sbjct: 9668687 cacaacgccatcctccagaccatctccg 9668714
>dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0038F12 Length = 190014 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 432 cacaacaccatcatccagaccatctccg 459 |||||| ||||| ||||||||||||||| Sbjct: 106690 cacaacgccatcctccagaccatctccg 106717
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 437 caccatcatccagaccatctccgg 460 |||| ||||||||||||||||||| Sbjct: 5018824 caccctcatccagaccatctccgg 5018847
>dbj|AB122118.1| Chlamydomonas reinhardtii LhcI-5 gene for light-harvesting chlorophyll-a/b protein of photosystem I, complete cds Length = 1886 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 198 ggctccgtcaaccaggaccccatcttca 225 |||||||| |||||||||||||||||| Sbjct: 1058 ggctccgtggaccaggaccccatcttca 1085
>gb|AF218305.1|AF218305 Hordeum vulgare chlorophyll a/b binding protein precursor (lhca1) mRNA, complete cds; nuclear gene for chloroplast product Length = 784 Score = 40.1 bits (20), Expect = 8.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 327 aacgggagactggccatgctggcgttcctggggttc 362 |||||| | ||||| |||||||||||| |||||||| Sbjct: 626 aacgggcggctggcgatgctggcgttcgtggggttc 661
>dbj|AK066762.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075I09, full insert sequence Length = 1106 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 gcggtgggcgatgctggggg 24 |||||||||||||||||||| Sbjct: 351 gcggtgggcgatgctggggg 370
>dbj|AK059596.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D11, full insert sequence Length = 1522 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 432 cacaacaccatcatccagaccatctccg 459 |||||| ||||| ||||||||||||||| Sbjct: 1122 cacaacgccatcctccagaccatctccg 1149
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 127 cgctcttcgtcatcgagttcatcc 150 ||||||||||||||||| |||||| Sbjct: 4362320 cgctcttcgtcatcgaggtcatcc 4362343
>gb|AF082100.1|AF082100 Streptomyces sp. MA6548 FK506 peptide synthetase (fkbP), FK506 oxidase (fkbO), and FK506 polyketide synthase (fkbB) genes, complete cds Length = 28732 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 acctgcagcagcacctggccgacc 426 |||||||||||||||||| ||||| Sbjct: 3431 acctgcagcagcacctggacgacc 3454
>gb|AF006751.1|AF006751 Homo sapiens ES/130 mRNA, complete cds Length = 3106 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 cctcctcctccacgctcttc 134 |||||||||||||||||||| Sbjct: 2228 cctcctcctccacgctcttc 2209
>gb|AF061577.1|AF061577 Oryza sativa chlorophyll a/b binding protein (RCABP89) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1027 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 gcggtgggcgatgctggggg 24 |||||||||||||||||||| Sbjct: 340 gcggtgggcgatgctggggg 359
>gb|M19529.1|PIGFSA Pig follistatin (FS) gene, complete cds Length = 6247 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 tcgcctcctcctccacgctc 131 |||||||||||||||||||| Sbjct: 2631 tcgcctcctcctccacgctc 2650
>dbj|AB037819.2| Homo sapiens mRNA for KIAA1398 protein, partial cds Length = 5468 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 cctcctcctccacgctcttc 134 |||||||||||||||||||| Sbjct: 4191 cctcctcctccacgctcttc 4172
>dbj|D00642.1|RICLHCP2 Oryza sativa (japonica cultivar-group) mRNA for type II light-harvesting chlorophyll a/b binding protein of photosystem II (LHCPII), complete cds Length = 989 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 gcggtgggcgatgctggggg 24 |||||||||||||||||||| Sbjct: 332 gcggtgggcgatgctggggg 351 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,261,001 Number of Sequences: 3902068 Number of extensions: 5261001 Number of successful extensions: 98801 Number of sequences better than 10.0: 106 Number of HSP's better than 10.0 without gapping: 106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97974 Number of HSP's gapped (non-prelim): 815 length of query: 587 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 564 effective length of database: 17,143,297,704 effective search space: 9668819905056 effective search space used: 9668819905056 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
