ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baall03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474191.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1326 Score = 48.1 bits (24), Expect = 0.034 Identities = 45/52 (86%) Strand = Plus / Plus Query: 174 gaaaaggccaagggaaaacattctggattaaacctatattcaaagcaatggg 225 ||||||||||||||||||||||| || | ||| |||||| | ||||||||| Sbjct: 542 gaaaaggccaagggaaaacattccagactgaacttatatttagagcaatggg 593
>emb|AL662953.3|OSJN00153 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011F23, complete sequence Length = 149353 Score = 48.1 bits (24), Expect = 0.034 Identities = 45/52 (86%) Strand = Plus / Minus Query: 174 gaaaaggccaagggaaaacattctggattaaacctatattcaaagcaatggg 225 ||||||||||||||||||||||| || | ||| |||||| | ||||||||| Sbjct: 43036 gaaaaggccaagggaaaacattccagactgaacttatatttagagcaatggg 42985
>gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence Length = 181577 Score = 48.1 bits (24), Expect = 0.034 Identities = 45/52 (86%) Strand = Plus / Minus Query: 174 gaaaaggccaagggaaaacattctggattaaacctatattcaaagcaatggg 225 ||||||||||||||||||||||| || | ||| |||||| | ||||||||| Sbjct: 43229 gaaaaggccaagggaaaacattccagactgaacttatatttagagcaatggg 43178
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 48.1 bits (24), Expect = 0.034 Identities = 45/52 (86%) Strand = Plus / Minus Query: 174 gaaaaggccaagggaaaacattctggattaaacctatattcaaagcaatggg 225 ||||||||||||||||||||||| || | ||| |||||| | ||||||||| Sbjct: 33611976 gaaaaggccaagggaaaacattccagactgaacttatatttagagcaatggg 33611925
>dbj|AK067399.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106M01, full insert sequence Length = 1693 Score = 48.1 bits (24), Expect = 0.034 Identities = 45/52 (86%) Strand = Plus / Plus Query: 174 gaaaaggccaagggaaaacattctggattaaacctatattcaaagcaatggg 225 ||||||||||||||||||||||| || | ||| |||||| | ||||||||| Sbjct: 612 gaaaaggccaagggaaaacattccagactgaacttatatttagagcaatggg 663
>gb|AC183539.2| Pan troglodytes BAC clone CH251-340H7 from chromosome 15, complete sequence Length = 155024 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 572 tttgtatatgtattgtatagt 592 ||||||||||||||||||||| Sbjct: 105863 tttgtatatgtattgtatagt 105843
>gb|AC121286.7| Mus musculus chromosome 12, clone RP23-36H21, complete sequence Length = 227648 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 aatggggtcaaatggaaaaaa 240 ||||||||||||||||||||| Sbjct: 134744 aatggggtcaaatggaaaaaa 134764
>gb|AC009652.14| Homo sapiens chromosome 11, clone RP11-428C19, complete sequence Length = 200823 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 cctgtctccatctccacaact 71 ||||||||||||||||||||| Sbjct: 151620 cctgtctccatctccacaact 151600
>gb|AC027026.11| Homo sapiens chromosome 11, clone RP11-589F4, complete sequence Length = 155376 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 cctgtctccatctccacaact 71 ||||||||||||||||||||| Sbjct: 131523 cctgtctccatctccacaact 131543
>gb|AC087241.11| Homo sapiens 12 BAC RP11-268P4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 146000 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 515 tatcttagtggttgtattcatcaat 539 |||||||||||||||||| |||||| Sbjct: 73489 tatcttagtggttgtatttatcaat 73465
>gb|AC055876.16| Homo sapiens chromosome 15, clone RP11-578F21, complete sequence Length = 192533 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 572 tttgtatatgtattgtatagt 592 ||||||||||||||||||||| Sbjct: 143313 tttgtatatgtattgtatagt 143333
>gb|AC153859.6| Mus musculus 10 BAC RP23-135F12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 222182 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 gggtcaaatggaaaaaagtag 244 ||||||||||||||||||||| Sbjct: 54516 gggtcaaatggaaaaaagtag 54536
>gb|AC005747.1|AC005747 Homo sapiens chromosome 17, clone hRPK.150_K_15, complete sequence Length = 166701 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 aagacttggtctgtttcatag 351 ||||||||||||||||||||| Sbjct: 115355 aagacttggtctgtttcatag 115375
>gb|AC153645.4| Mus musculus BAC clone RP24-534E8 from chromosome 13, complete sequence Length = 182805 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aacctatattcaaagcaatg 223 |||||||||||||||||||| Sbjct: 119222 aacctatattcaaagcaatg 119241
>gb|AC135667.5| Mus musculus BAC clone RP24-536G18 from chromosome 13, complete sequence Length = 166185 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aacctatattcaaagcaatg 223 |||||||||||||||||||| Sbjct: 5367 aacctatattcaaagcaatg 5386
>ref|XM_493921.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2382 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 tcccattgcctgaaccaccc 51 |||||||||||||||||||| Sbjct: 163 tcccattgcctgaaccaccc 144
>gb|AC165317.8| Mus musculus chromosome 5, clone RP23-265O20, complete sequence Length = 190857 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 tatatgttgaatacaagtgc 507 |||||||||||||||||||| Sbjct: 108138 tatatgttgaatacaagtgc 108157
>gb|AY360393.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0096K16, complete sequence Length = 164501 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 ttagtggttgtagctaactt 462 |||||||||||||||||||| Sbjct: 53038 ttagtggttgtagctaactt 53057
>gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0001A07, complete sequence Length = 164898 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 tcccattgcctgaaccaccc 51 |||||||||||||||||||| Sbjct: 47495 tcccattgcctgaaccaccc 47514
>gb|AY360394.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0070J19, complete sequence Length = 158749 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 ttagtggttgtagctaactt 462 |||||||||||||||||||| Sbjct: 10209 ttagtggttgtagctaactt 10190
>gb|AC008092.4| Drosophila melanogaster clone BACR22F22, complete sequence Length = 175045 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 aaaaggccaagggaaaacat 194 |||||||||||||||||||| Sbjct: 112784 aaaaggccaagggaaaacat 112765
>gb|AE017335.3| Bacillus anthracis str. 'Ames Ancestor' plasmid pXO2, complete sequence Length = 94830 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 tcaaatggaaaaaagtagca 246 |||||||||||||||||||| Sbjct: 68157 tcaaatggaaaaaagtagca 68176
>gb|AC147216.3| Pan troglodytes BAC clone RP43-156I12 from 7, complete sequence Length = 199965 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 aatcttctatatgttgaata 500 |||||||||||||||||||| Sbjct: 32347 aatcttctatatgttgaata 32366
>gb|AC131710.3| Mus musculus BAC clone RP23-187M22 from 15, complete sequence Length = 224591 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 aacatatgtatttccttagt 447 |||||||||||||||||||| Sbjct: 177664 aacatatgtatttccttagt 177645
>gb|AF188935.1| Bacillus anthracis plasmid pXO2, complete sequence Length = 96231 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 tcaaatggaaaaaagtagca 246 |||||||||||||||||||| Sbjct: 68627 tcaaatggaaaaaagtagca 68646
>gb|AY180331.1| Oryza sativa (japonica cultivar-group) putative DNA helicase RecQsim mRNA, complete cds, alternatively spliced Length = 2897 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 tcccattgcctgaaccaccc 51 |||||||||||||||||||| Sbjct: 163 tcccattgcctgaaccaccc 144
>gb|AC091153.10| Homo sapiens chromosome 17, clone RP11-314A20, complete sequence Length = 195494 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 cctgaaccacccctgtctcc 59 |||||||||||||||||||| Sbjct: 8249 cctgaaccacccctgtctcc 8230
>emb|AL049611.24|HSJ180E22 Human DNA sequence from clone RP1-180E22 on chromosome 6p11.2-12.3 Contains the 3' part of the gene for a novel protein with possible Calmodulin like calcium-binding domains, the gene for a TRAM-like protein (KIAA0057), part of a novel gene and a CpG island, complete sequence Length = 109813 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 ggagatgttatggcttttgt 270 |||||||||||||||||||| Sbjct: 98747 ggagatgttatggcttttgt 98766
>ref|XM_787580.1| PREDICTED: Strongylocentrotus purpuratus similar to scribble isoform b (LOC587871), mRNA Length = 1647 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 aagcaatggggtcaaatggaaaaa 239 ||||||||||||||| |||||||| Sbjct: 1401 aagcaatggggtcaattggaaaaa 1424
>gb|AC027820.12| Homo sapiens chromosome 17, clone RP11-198F11, complete sequence Length = 154353 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 cctgaaccacccctgtctcc 59 |||||||||||||||||||| Sbjct: 47837 cctgaaccacccctgtctcc 47818
>gb|AC156575.3| Mus musculus BAC clone RP23-4P20 from chromosome 13, complete sequence Length = 196560 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 cttgagtgaagtaaactaat 479 |||||||||||||||||||| Sbjct: 57939 cttgagtgaagtaaactaat 57958
>emb|CR933018.9| Zebrafish DNA sequence from clone CH211-224H1 in linkage group 4, complete sequence Length = 181431 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 atggaaaaatgtttcagggg 171 |||||||||||||||||||| Sbjct: 40739 atggaaaaatgtttcagggg 40720
>gb|AC025888.8| Homo sapiens chromosome 18, clone RP11-479H18, complete sequence Length = 178201 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 529 tattcatcaatggtgtcttgtgatgaat 556 ||||| ||||||||||||| |||||||| Sbjct: 50211 tattcttcaatggtgtcttttgatgaat 50238
>gb|AE011191.1| Bacillus anthracis str. A2012 plasmid pXO2, complete sequence Length = 94829 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 tcaaatggaaaaaagtagca 246 |||||||||||||||||||| Sbjct: 68156 tcaaatggaaaaaagtagca 68175
>gb|AC099494.3| Homo sapiens chromosome 16 clone RP11-1102P22, complete sequence Length = 143557 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 ccacccctgtctccatctcc 65 |||||||||||||||||||| Sbjct: 63378 ccacccctgtctccatctcc 63359
>gb|AC010767.7| Homo sapiens chromosome 17, clone RP11-188K10, complete sequence Length = 184952 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 417 acttgtatattaacatatgtattt 440 |||||||| ||||||||||||||| Sbjct: 51144 acttgtattttaacatatgtattt 51121
>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence Length = 140234 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 tcccattgcctgaaccaccc 51 |||||||||||||||||||| Sbjct: 14370 tcccattgcctgaaccaccc 14351
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 ttagtggttgtagctaactt 462 |||||||||||||||||||| Sbjct: 12383626 ttagtggttgtagctaactt 12383645
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 tcccattgcctgaaccaccc 51 |||||||||||||||||||| Sbjct: 2852884 tcccattgcctgaaccaccc 2852903
>gb|AC093904.3| Homo sapiens BAC clone RP11-734K21 from 2, complete sequence Length = 191827 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 aagggaaaacattctggatt 202 |||||||||||||||||||| Sbjct: 128790 aagggaaaacattctggatt 128771
>gb|AC018553.6| Homo sapiens chromosome 16 clone RP11-434E6, complete sequence Length = 172315 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 549 tgatgaatacaagagcacaa 568 |||||||||||||||||||| Sbjct: 120473 tgatgaatacaagagcacaa 120454
>gb|AC007343.7| Homo sapiens chromosome 16 clone RP11-463J22, complete sequence Length = 186732 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 549 tgatgaatacaagagcacaa 568 |||||||||||||||||||| Sbjct: 58558 tgatgaatacaagagcacaa 58539
>dbj|AP004458.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0045D08 Length = 160541 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 ttagtggttgtagctaactt 462 |||||||||||||||||||| Sbjct: 142275 ttagtggttgtagctaactt 142294
>dbj|AK072977.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023146C24, full insert sequence Length = 3058 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 tcccattgcctgaaccaccc 51 |||||||||||||||||||| Sbjct: 496 tcccattgcctgaaccaccc 477
>emb|BX897671.5| Zebrafish DNA sequence from clone CH211-214K5 in linkage group 4, complete sequence Length = 201108 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 atggaaaaatgtttcagggg 171 |||||||||||||||||||| Sbjct: 171684 atggaaaaatgtttcagggg 171703
>dbj|AK063338.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-A09, full insert sequence Length = 2293 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 tcccattgcctgaaccaccc 51 |||||||||||||||||||| Sbjct: 496 tcccattgcctgaaccaccc 477
>gb|AE003676.4| Drosophila melanogaster chromosome 3R, section 14 of 118 of the complete sequence Length = 267607 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 aaaaggccaagggaaaacat 194 |||||||||||||||||||| Sbjct: 69618 aaaaggccaagggaaaacat 69599
>gb|AC104898.9| Mus musculus chromosome 8, clone RP23-300I4, complete sequence Length = 181370 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 433 atgtatttccttagtggttgtagc 456 ||||||||||| |||||||||||| Sbjct: 122533 atgtatttcctgagtggttgtagc 122556
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 215 aaagcaatggggtcaaatggaaaa 238 |||||||| ||||||||||||||| Sbjct: 789037 aaagcaatcgggtcaaatggaaaa 789014
>gb|U02535.1|BAU02535 Bacillus anthracis plasmid pX02 positive trans-activator of capsule synthesis (acpA) gene, complete cds Length = 2289 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 tcaaatggaaaaaagtagca 246 |||||||||||||||||||| Sbjct: 147 tcaaatggaaaaaagtagca 166 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,967,022 Number of Sequences: 3902068 Number of extensions: 6967022 Number of successful extensions: 131011 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 130744 Number of HSP's gapped (non-prelim): 267 length of query: 617 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 594 effective length of database: 17,143,297,704 effective search space: 10183118836176 effective search space used: 10183118836176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
