>MNTC_BACHD (Q9KD29) Manganese transport system membrane protein mntC|
          Length = 292

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
 Frame = +1

Query: 364 SFTLIGVAGSLLGSVPCFLEGCGIVVQSFALQFRAMSHTVDPAEIIKLLIEALDMFLIGT 543
           S+    +  ++L  + C + GC I+++  AL   A+SH V P  +I  +I A   F IG 
Sbjct: 15  SYLQQALTAAILVGIICGVIGCFIILRGMALMGDAISHAVLPGVVIAYMIGA--SFFIG- 71

Query: 544 ALLTFAMGMYGMFYGSQ--RVQE 606
           A++T  +    + Y SQ  RV+E
Sbjct: 72  AVITGVITALAIGYVSQNSRVKE 94

>SPB4_YARLI (Q6C193) ATP-dependent rRNA helicase SPB4 (EC 3.6.1.-)|
          Length = 626

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 25/73 (34%), Positives = 36/73 (49%)
 Frame = -2

Query: 474 GHGAELQGERLNNNATTLEKTWD*TEERSCHADQRERLASHDTLISLQVQMNFVSFLSFT 295
           G G+EL+GE+L+  AT L      T+ R    + R+R   HD     Q  ++FVSF+ F 
Sbjct: 415 GPGSELEGEKLDQEATELY-----TKLRKWVLEDRQR---HD-----QALLSFVSFVRFY 461

Query: 294 RTRSASKMSGIYS 256
               A  +  I S
Sbjct: 462 SKHVAQSIFRIQS 474

>TI17C_DROME (Q9VGA2) Probable mitochondrial import inner membrane translocase|
           subunit Tim17 3
          Length = 222

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 340 DQGIVRCQSFTLIGVAGSLLGSVPCFLEGCGIVVQSFALQFRAMSHTVDP 489
           +  +V C    +I  AG+ + ++    +G GIV++    Q+ A+  T+DP
Sbjct: 113 NSALVGCLVLAMIEGAGAAVATINAADKGAGIVIKPQRAQWEAILETIDP 162

>TLE2_MOUSE (Q9WVB2) Transducin-like enhancer protein 2|
          Length = 767

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 24/79 (30%), Positives = 33/79 (41%)
 Frame = -3

Query: 590 EP*NMPYIPMANVSRAVPIRNMSNASMSSLMISAGSTVWDMARNCKAND*TTMPQPSRKH 411
           EP +    P       +P R     S +SL  S GS +   +++   ND  T    SR  
Sbjct: 271 EPPSPVTTPCGKAPLCIPARRDLTDSPASLASSLGSPL-PRSKDIALNDLPTGTPASRSC 329

Query: 410 GTEPRSDPATPISVNDWHL 354
           GT P  D +TP   +  HL
Sbjct: 330 GTSPPQDSSTPGPSSASHL 348

>COTA_BACSU (P07788) Spore coat protein A|
          Length = 513

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 330 PAN*SGYREMPVVHADRRGRIAPRFSPMFSRGLWHC 437
           P +  G+++    HA    RIA  F P   R +WHC
Sbjct: 457 PPSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVWHC 492

>PSD13_CHICK (P84169) 26S proteasome non-ATPase regulatory subunit 13 (26S|
           proteasome regulatory subunit S11) (26S proteasome
           regulatory subunit p40.5)
          Length = 376

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 409 PCFLEGCGIV--VQSFALQFRAMSHTVDPAEIIKLLIEALDMFLIGTALLTF 558
           PCF +G G++   ++F  +F    H V+P  ++++++  +      T  LTF
Sbjct: 48  PCFAQGDGLIKLYENFISEFE---HRVNPLSLVEIILHVVRQMTDPTVALTF 96

>TSP17_CAEEL (Q11098) Tetraspanin-17|
          Length = 243

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 502 KLLIEALDMFLIGTALLTFAMGMYGMFYGSQ--RVQEPIYERLK 627
           + L+ A  MFLIGT L   AMG   +FY  +   V+E + E +K
Sbjct: 53  RFLLLAFVMFLIGTFLADVAMGTLSLFYKDKVYSVKENVREIVK 96

>CACB2_HUMAN (Q08289) Voltage-dependent L-type calcium channel beta-2 subunit|
           (CAB2) (Calcium channel, voltage-dependent, beta 2
           subunit) (Lambert-Eaton myasthenic syndrome antigen B)
           (MYSB)
          Length = 660

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 477 HSRSSRDHQTAHRSIRHVPDRHCPADVRHGDVRHVLRLAARPGAH 611
           +S    DH  +HR   H  + H  +D RH + RH  R   R   H
Sbjct: 574 YSHDHVDHYASHRDHNHRDETHGSSDHRHRESRHRSRDVDREQDH 618


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,084,167
Number of Sequences: 219361
Number of extensions: 1582577
Number of successful extensions: 6155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6143
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)