ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baalk19 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 93.7 bits (47), Expect = 7e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 342 tcagggtatcgtgagatgccagtcgttcacgctgatcggcgtggcaggatcgctcctcgg 401 ||||||| | || |||||||||||||||| ||| ||||| ||||| ||||| |||||||| Sbjct: 5074174 tcagggtgttgtcagatgccagtcgttcatgctcatcggtgtggccggatcactcctcgg 5074115 Query: 402 ttcagtcccatgttttctcgagg 424 |||||||||||||||||||||| Sbjct: 5074114 atcagtcccatgttttctcgagg 5074092 Score = 50.1 bits (25), Expect = 0.009 Identities = 58/69 (84%) Strand = Plus / Minus Query: 522 agacatgttcctgatcggcactgccctgctgacgttcgccatggggatgtacggcatgtt 581 |||||||||||||||| |||| || || || ||||| | |||||| |||| | |||||| Sbjct: 5073825 agacatgttcctgatctgcaccgctcttctcacgtttggcatgggaatgtgcatcatgtt 5073766 Query: 582 ctacggctc 590 ||||||||| Sbjct: 5073765 ctacggctc 5073757
>dbj|AP002537.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0001B06 Length = 140304 Score = 93.7 bits (47), Expect = 7e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 342 tcagggtatcgtgagatgccagtcgttcacgctgatcggcgtggcaggatcgctcctcgg 401 ||||||| | || |||||||||||||||| ||| ||||| ||||| ||||| |||||||| Sbjct: 67612 tcagggtgttgtcagatgccagtcgttcatgctcatcggtgtggccggatcactcctcgg 67553 Query: 402 ttcagtcccatgttttctcgagg 424 |||||||||||||||||||||| Sbjct: 67552 atcagtcccatgttttctcgagg 67530 Score = 50.1 bits (25), Expect = 0.009 Identities = 58/69 (84%) Strand = Plus / Minus Query: 522 agacatgttcctgatcggcactgccctgctgacgttcgccatggggatgtacggcatgtt 581 |||||||||||||||| |||| || || || ||||| | |||||| |||| | |||||| Sbjct: 67263 agacatgttcctgatctgcaccgctcttctcacgtttggcatgggaatgtgcatcatgtt 67204 Query: 582 ctacggctc 590 ||||||||| Sbjct: 67203 ctacggctc 67195
>dbj|AP003417.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0498B01 Length = 146812 Score = 93.7 bits (47), Expect = 7e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 342 tcagggtatcgtgagatgccagtcgttcacgctgatcggcgtggcaggatcgctcctcgg 401 ||||||| | || |||||||||||||||| ||| ||||| ||||| ||||| |||||||| Sbjct: 6205 tcagggtgttgtcagatgccagtcgttcatgctcatcggtgtggccggatcactcctcgg 6146 Query: 402 ttcagtcccatgttttctcgagg 424 |||||||||||||||||||||| Sbjct: 6145 atcagtcccatgttttctcgagg 6123 Score = 50.1 bits (25), Expect = 0.009 Identities = 58/69 (84%) Strand = Plus / Minus Query: 522 agacatgttcctgatcggcactgccctgctgacgttcgccatggggatgtacggcatgtt 581 |||||||||||||||| |||| || || || ||||| | |||||| |||| | |||||| Sbjct: 5856 agacatgttcctgatctgcaccgctcttctcacgtttggcatgggaatgtgcatcatgtt 5797 Query: 582 ctacggctc 590 ||||||||| Sbjct: 5796 ctacggctc 5788
>ref|XM_469660.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1076 Score = 85.7 bits (43), Expect = 2e-13 Identities = 91/107 (85%) Strand = Plus / Plus Query: 484 gatccagccgagatcatcaaactgctcatcgaagcattagacatgttcctgatcggcact 543 |||| ||| |||||||| || ||||| ||||| ||| |||||||||||||||||||||| Sbjct: 654 gatcaagcagagatcataaagctgctgatcgaggcaatagacatgttcctgatcggcaca 713 Query: 544 gccctgctgacgttcgccatggggatgtacggcatgttctacggctc 590 || || || ||||| | |||||| |||||| ||||||||||||||| Sbjct: 714 gctcttctcacgtttggcatgggaatgtacatcatgttctacggctc 760 Score = 81.8 bits (41), Expect = 3e-12 Identities = 68/77 (88%) Strand = Plus / Plus Query: 355 agatgccagtcgttcacgctgatcggcgtggcaggatcgctcctcggttcagtcccatgt 414 |||||||||||||||||||| ||||| ||||| ||||| ||| |||| ||||| ||||| Sbjct: 525 agatgccagtcgttcacgctcatcggtgtggccggatcactcgtcggatcagtgccatgc 584 Query: 415 tttctcgagggttgtgg 431 ||||||||||| ||||| Sbjct: 585 tttctcgagggatgtgg 601 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 119 ctgctgcctctggcgtacgaggtgaccaggaggctcctgctcaggcagctcgggg 173 |||||||| |||||||||||||| | |||||||| |||| ||||||||||||| Sbjct: 402 ctgctgccgctggcgtacgaggtcgcgaggaggctggtgctgaggcagctcgggg 456
>dbj|AK062272.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-A10, full insert sequence Length = 1297 Score = 85.7 bits (43), Expect = 2e-13 Identities = 91/107 (85%) Strand = Plus / Plus Query: 484 gatccagccgagatcatcaaactgctcatcgaagcattagacatgttcctgatcggcact 543 |||| ||| |||||||| || ||||| ||||| ||| |||||||||||||||||||||| Sbjct: 670 gatcaagcagagatcataaagctgctgatcgaggcaatagacatgttcctgatcggcaca 729 Query: 544 gccctgctgacgttcgccatggggatgtacggcatgttctacggctc 590 || || || ||||| | |||||| |||||| ||||||||||||||| Sbjct: 730 gctcttctcacgtttggcatgggaatgtacatcatgttctacggctc 776 Score = 81.8 bits (41), Expect = 3e-12 Identities = 68/77 (88%) Strand = Plus / Plus Query: 355 agatgccagtcgttcacgctgatcggcgtggcaggatcgctcctcggttcagtcccatgt 414 |||||||||||||||||||| ||||| ||||| ||||| ||| |||| ||||| ||||| Sbjct: 541 agatgccagtcgttcacgctcatcggtgtggccggatcactcgtcggatcagtgccatgc 600 Query: 415 tttctcgagggttgtgg 431 ||||||||||| ||||| Sbjct: 601 tttctcgagggatgtgg 617 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 119 ctgctgcctctggcgtacgaggtgaccaggaggctcctgctcaggcagctcgggg 173 |||||||| |||||||||||||| | |||||||| |||| ||||||||||||| Sbjct: 418 ctgctgccgctggcgtacgaggtcgcgaggaggctggtgctgaggcagctcgggg 472
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 342 tcagggtatcgtgagatgccagtcgttcacgctgatcggcgtggcaggatcgctcctcgg 401 ||||||| | || |||||||||||||||||||| ||||| ||||| ||||| ||| |||| Sbjct: 30057533 tcagggtgttgtcagatgccagtcgttcacgctcatcggtgtggccggatcactcgtcgg 30057592 Query: 402 ttcagtcccatgttttctcgagg 424 ||||| ||||| |||||||||| Sbjct: 30057593 atcagtgccatgctttctcgagg 30057615 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 522 agacatgttcctgatcggcactgccctgctgacgttcgccatggggatgtacggcatgtt 581 ||||||||||||||||||||| || || || ||||| | |||||| |||||| |||||| Sbjct: 30057947 agacatgttcctgatcggcacagctcttctcacgtttggcatgggaatgtacatcatgtt 30058006 Query: 582 ctacggctc 590 ||||||||| Sbjct: 30058007 ctacggctc 30058015 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 119 ctgctgcctctggcgtacgaggtgaccaggaggctcctgctcaggcagctcgggg 173 |||||||| |||||||||||||| | |||||||| |||| ||||||||||||| Sbjct: 30057298 ctgctgccgctggcgtacgaggtcgcgaggaggctggtgctgaggcagctcgggg 30057352 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 490 gccgagatcatcaaactgctca 511 |||||||||||||||||||||| Sbjct: 33283210 gccgagatcatcaaactgctca 33283231
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 342 tcagggtatcgtgagatgccagtcgttcacgctgatcggcgtggcaggatcgctcctcgg 401 ||||||| | || |||||||||||||||||||| ||||| ||||| ||||| ||| |||| Sbjct: 50218 tcagggtgttgtcagatgccagtcgttcacgctcatcggtgtggccggatcactcgtcgg 50159 Query: 402 ttcagtcccatgttttctcgagg 424 ||||| ||||| |||||||||| Sbjct: 50158 atcagtgccatgctttctcgagg 50136 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 522 agacatgttcctgatcggcactgccctgctgacgttcgccatggggatgtacggcatgtt 581 ||||||||||||||||||||| || || || ||||| | |||||| |||||| |||||| Sbjct: 49804 agacatgttcctgatcggcacagctcttctcacgtttggcatgggaatgtacatcatgtt 49745 Query: 582 ctacggctc 590 ||||||||| Sbjct: 49744 ctacggctc 49736 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 119 ctgctgcctctggcgtacgaggtgaccaggaggctcctgctcaggcagctcgggg 173 |||||||| |||||||||||||| | |||||||| |||| ||||||||||||| Sbjct: 50453 ctgctgccgctggcgtacgaggtcgcgaggaggctggtgctgaggcagctcgggg 50399
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 342 tcagggtatcgtgagatgccagtcgttcacgctgatcggcgtggcaggatcgctcctcgg 401 ||||||| | || |||||||||||||||||||| ||||| ||||| ||||| ||| |||| Sbjct: 30148955 tcagggtgttgtcagatgccagtcgttcacgctcatcggtgtggccggatcactcgtcgg 30149014 Query: 402 ttcagtcccatgttttctcgagg 424 ||||| ||||| |||||||||| Sbjct: 30149015 atcagtgccatgctttctcgagg 30149037 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 522 agacatgttcctgatcggcactgccctgctgacgttcgccatggggatgtacggcatgtt 581 ||||||||||||||||||||| || || || ||||| | |||||| |||||| |||||| Sbjct: 30149369 agacatgttcctgatcggcacagctcttctcacgtttggcatgggaatgtacatcatgtt 30149428 Query: 582 ctacggctc 590 ||||||||| Sbjct: 30149429 ctacggctc 30149437 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 119 ctgctgcctctggcgtacgaggtgaccaggaggctcctgctcaggcagctcgggg 173 |||||||| |||||||||||||| | |||||||| |||| ||||||||||||| Sbjct: 30148720 ctgctgccgctggcgtacgaggtcgcgaggaggctggtgctgaggcagctcgggg 30148774 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 490 gccgagatcatcaaactgctca 511 |||||||||||||||||||||| Sbjct: 33373720 gccgagatcatcaaactgctca 33373741
>ref|NM_188222.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 717 Score = 50.1 bits (25), Expect = 0.009 Identities = 58/69 (84%) Strand = Plus / Plus Query: 522 agacatgttcctgatcggcactgccctgctgacgttcgccatggggatgtacggcatgtt 581 |||||||||||||||| |||| || || || ||||| | |||||| |||| | |||||| Sbjct: 378 agacatgttcctgatctgcaccgctcttctcacgtttggcatgggaatgtgcatcatgtt 437 Query: 582 ctacggctc 590 ||||||||| Sbjct: 438 ctacggctc 446
>ref|XM_470001.1| Oryza sativa (japonica cultivar-group), mRNA Length = 856 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 490 gccgagatcatcaaactgctca 511 |||||||||||||||||||||| Sbjct: 670 gccgagatcatcaaactgctca 691
>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete sequence Length = 122815 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 490 gccgagatcatcaaactgctca 511 |||||||||||||||||||||| Sbjct: 39726 gccgagatcatcaaactgctca 39747
>ref|XM_849236.1| PREDICTED: Canis familiaris similar to lymphocyte-specific protein 1 isoform 1 (LOC611553), mRNA Length = 1581 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 152 ctcctgctcaggcagctcgggg 173 |||||||||||||||||||||| Sbjct: 237 ctcctgctcaggcagctcgggg 216
>gb|AC160393.2| Mus musculus BAC clone RP23-136M3 from chromosome 12, complete sequence Length = 215692 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 599 tccaggagcccatctacgagag 620 |||||||||||||||||||||| Sbjct: 85235 tccaggagcccatctacgagag 85256
>dbj|AK090201.1| Mus musculus 16 days neonate male medulla oblongata cDNA, RIKEN full-length enriched library, clone:G630016I04 product:unclassifiable, full insert sequence Length = 1280 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 599 tccaggagcccatctacgagag 620 |||||||||||||||||||||| Sbjct: 93 tccaggagcccatctacgagag 72
>dbj|AK062698.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-A11, full insert sequence Length = 856 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 490 gccgagatcatcaaactgctca 511 |||||||||||||||||||||| Sbjct: 670 gccgagatcatcaaactgctca 691
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 326 tggacctgcaaactgatcaggg 347 |||||||||||||||||||||| Sbjct: 2513313 tggacctgcaaactgatcaggg 2513292
>gb|AF072694.1|AF072694 Oryza sativa germin-like protein 7 (GER7) mRNA, complete cds Length = 856 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 490 gccgagatcatcaaactgctca 511 |||||||||||||||||||||| Sbjct: 655 gccgagatcatcaaactgctca 676
>ref|XM_969109.1| PREDICTED: Tribolium castaneum similar to CG7807-PB, isoform B (LOC663046), mRNA Length = 1866 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 154 cctgctcaggcagctcggggagacg 178 |||||||||||||| |||||||||| Sbjct: 1515 cctgctcaggcagcacggggagacg 1539
>gb|AC170734.3| Sorex araneus clone SA_Ba-257D3, complete sequence Length = 122469 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 421 gagggttgtggcattgttgtt 441 ||||||||||||||||||||| Sbjct: 25306 gagggttgtggcattgttgtt 25326
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 ggagaagcggacagcgtgga 114 |||||||||||||||||||| Sbjct: 1673788 ggagaagcggacagcgtgga 1673807
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 359 gccagtcgttcacgctgatcggcg 382 ||||| |||||||||||||||||| Sbjct: 2156505 gccagacgttcacgctgatcggcg 2156482
>gb|AC140336.2| Mus musculus BAC clone RP24-266F17 from chromosome 18, complete sequence Length = 186205 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 ccatgtcccacacagtagat 486 |||||||||||||||||||| Sbjct: 120982 ccatgtcccacacagtagat 120963
>gb|AY313848.1| Vaccinia virus strain Acambis clone 3, complete genome Length = 197418 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ataaactactacgtactgta 261 |||||||||||||||||||| Sbjct: 190482 ataaactactacgtactgta 190501 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 ataaactactacgtactgta 261 |||||||||||||||||||| Sbjct: 6925 ataaactactacgtactgta 6906
>gb|AY313847.1| Vaccinia virus strain Acambis clone 2000, complete genome Length = 199234 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ataaactactacgtactgta 261 |||||||||||||||||||| Sbjct: 192094 ataaactactacgtactgta 192113 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 ataaactactacgtactgta 261 |||||||||||||||||||| Sbjct: 6980 ataaactactacgtactgta 6961
>ref|XM_905990.2| PREDICTED: Mus musculus gamma-aminobutyric acid (GABA) B receptor 2 (Gabbr2), mRNA Length = 3021 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 ccaggaggctcctgctcaggcagc 167 ||||||||||||||| |||||||| Sbjct: 1147 ccaggaggctcctgcgcaggcagc 1124
>ref|XM_143750.7| PREDICTED: Mus musculus gamma-aminobutyric acid (GABA) B receptor 2, transcript variant 1 (Gabbr2), mRNA Length = 3998 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 ccaggaggctcctgctcaggcagc 167 ||||||||||||||| |||||||| Sbjct: 1211 ccaggaggctcctgcgcaggcagc 1188
>gb|AC109280.9| Mus musculus chromosome 18, clone RP23-400B7, complete sequence Length = 213683 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 ccatgtcccacacagtagat 486 |||||||||||||||||||| Sbjct: 213185 ccatgtcccacacagtagat 213166
>gb|DQ377945.1| Vaccinia virus strain 3737, complete genome Length = 199377 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ataaactactacgtactgta 261 |||||||||||||||||||| Sbjct: 194679 ataaactactacgtactgta 194698 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 ataaactactacgtactgta 261 |||||||||||||||||||| Sbjct: 9539 ataaactactacgtactgta 9520
>emb|X94355.2|CV41KBPL Cowpox virus strain GRI-90, complete genome Length = 223666 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ataaactactacgtactgta 261 |||||||||||||||||||| Sbjct: 211615 ataaactactacgtactgta 211634
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 caaagttcatctggacctgc 334 |||||||||||||||||||| Sbjct: 217495 caaagttcatctggacctgc 217476
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 359 gccagtcgttcacgctgatcggcg 382 ||||| |||||||||||||||||| Sbjct: 318133 gccagacgttcacgctgatcggcg 318110
>gb|AC099665.2| Homo sapiens chromosome 3 clone RP11-15B21, complete sequence Length = 192063 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 caggaggctcctgctcaggc 164 |||||||||||||||||||| Sbjct: 11217 caggaggctcctgctcaggc 11236
>gb|AY766183.1| Vaccinia virus strain ACAM1000, partial sequence Length = 201404 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ataaactactacgtactgta 261 |||||||||||||||||||| Sbjct: 192787 ataaactactacgtactgta 192806 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 ataaactactacgtactgta 261 |||||||||||||||||||| Sbjct: 7106 ataaactactacgtactgta 7087
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 caaggtcgtcgaggccgtcg 227 |||||||||||||||||||| Sbjct: 1591845 caaggtcgtcgaggccgtcg 1591864
>ref|NM_067049.1| Caenorhabditis elegans Y47D3A.21 (Y47D3A.21) mRNA, complete cds Length = 579 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 491 ccgagatcatcaaactgctcatcg 514 ||||||||||||| |||||||||| Sbjct: 563 ccgagatcatcaatctgctcatcg 540
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 359 gccagtcgttcacgctgatcggcg 382 ||||| |||||||||||||||||| Sbjct: 2006509 gccagacgttcacgctgatcggcg 2006532
>gb|AC003037.1|AC003037 Homo sapiens Xp22 BAC GSHB 526D21 (Genome Systems Human BAC library) complete sequence Length = 213863 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 616 gagaggctgaagaaaggggcgagg 639 ||||||||||||||||||| |||| Sbjct: 144804 gagaggctgaagaaaggggtgagg 144781
>dbj|AP000041.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 12/28, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 gcttagaaaactaacaaagt 320 |||||||||||||||||||| Sbjct: 32532 gcttagaaaactaacaaagt 32551
>emb|AL117202.1|CEY47D3A Caenorhabditis elegans YAC Y47D3A, complete sequence Length = 199814 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 491 ccgagatcatcaaactgctcatcg 514 ||||||||||||| |||||||||| Sbjct: 140649 ccgagatcatcaatctgctcatcg 140672
>dbj|AP000285.2| Homo sapiens genomic DNA, chromosome 21 clone:CMP21-T1558, complete sequence Length = 21615 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 gcttagaaaactaacaaagt 320 |||||||||||||||||||| Sbjct: 18555 gcttagaaaactaacaaagt 18574
>dbj|AP001715.1| Homo sapiens genomic DNA, chromosome 21q, section 59/105 Length = 340000 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 gcttagaaaactaacaaagt 320 |||||||||||||||||||| Sbjct: 297682 gcttagaaaactaacaaagt 297701
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 359 gccagtcgttcacgctgatcggcg 382 ||||| |||||||||||||||||| Sbjct: 2641138 gccagacgttcacgctgatcggcg 2641161
>emb|BX005247.9| Mouse DNA sequence from clone RP23-377A17 on chromosome 4, complete sequence Length = 63139 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 ccaggaggctcctgctcaggcagc 167 ||||||||||||||| |||||||| Sbjct: 10458 ccaggaggctcctgcgcaggcagc 10481
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 caaggtcgtcgaggccgtcg 227 |||||||||||||||||||| Sbjct: 395795 caaggtcgtcgaggccgtcg 395814
>dbj|AP000286.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone:T1487, complete sequence Length = 22638 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 gcttagaaaactaacaaagt 320 |||||||||||||||||||| Sbjct: 7813 gcttagaaaactaacaaagt 7832
>dbj|AP000185.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone Q78C10-f32E9, segment 12/21, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 gcttagaaaactaacaaagt 320 |||||||||||||||||||| Sbjct: 38508 gcttagaaaactaacaaagt 38527
>emb|AL731846.3| Sminthopsis DNA sequence from clone XX-38L18, complete sequence Length = 48504 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 actaacaaagttcatctgga 329 |||||||||||||||||||| Sbjct: 45076 actaacaaagttcatctgga 45057
>dbj|AP000109.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related, Q78C10-149C3 region, segment 12/20 Length = 100000 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 gcttagaaaactaacaaagt 320 |||||||||||||||||||| Sbjct: 38508 gcttagaaaactaacaaagt 38527 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,214,347 Number of Sequences: 3902068 Number of extensions: 4214347 Number of successful extensions: 81253 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80507 Number of HSP's gapped (non-prelim): 746 length of query: 646 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 623 effective length of database: 17,143,297,704 effective search space: 10680274469592 effective search space used: 10680274469592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
