ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baalk17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470787.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1481 Score = 432 bits (218), Expect = e-118 Identities = 356/402 (88%) Strand = Plus / Plus Query: 106 tgaggggccccatcaacgacgtcaagtgcatgcgatacctcctcaccgagcgcttcggct 165 ||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 375 tgaggggccccgtcaacgacgtcaagtgcatgcggtacctcctctgcgagcgcttcggct 434 Query: 166 tccccaacgactgcgtcctcatcctcactgatgaggagaggaacccgtgcaggcagccga 225 |||||||||||||||||||||||||||| || ||||||| | ||||||||||| | ||| Sbjct: 435 tccccaacgactgcgtcctcatcctcaccgacgaggagaaggacccgtgcaggttggcga 494 Query: 226 ccaaggacaacatccgcatggcgatgcactggctggtgcaggggtgcagctacggcgact 285 | ||||| |||||| | ||||||||| |||||||||||||||||||||||| ||| |||| Sbjct: 495 cgaaggagaacatcaggatggcgatgaactggctggtgcaggggtgcagctccggtgact 554 Query: 286 ccctggtgttccagttctccggcatgggcgcgcaggtccccgacgacgacggcgacgagc 345 | ||||||||||| |||||||| || || | |||||| || |||||||||||||||||| Sbjct: 555 cgctggtgttccacttctccgggatcggggtgcaggtgccggacgacgacggcgacgagg 614 Query: 346 tggacggcatggacgaggccctctgccccgtggactcgttccagcagggccccatcctgg 405 ||||||| |||||||| |||||||| ||||||||||| |||||||||||||||| Sbjct: 615 tggacgggtacgacgaggcgatctgccccatggactcgttcagccagggccccatcctgg 674 Query: 406 acgacgagatcaacgaggccatcgtccgcccgctcgtgcacggcgtcaagctgcacgcca 465 ||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||| Sbjct: 675 acgacgagatcaacgaggccatcgtccgcccgctcgtccacggcgccaagctccacgccg 734 Query: 466 tcgtcgatgcctgccacagcgccaccgtcctcgacctcccct 507 ||||||| ||| |||||| ||||||||||||||||||||| Sbjct: 735 tcgtcgacgccgagcacagctccaccgtcctcgacctcccct 776
>gb|AY107563.1| Zea mays PCO093543 mRNA sequence Length = 995 Score = 307 bits (155), Expect = 2e-80 Identities = 251/283 (88%) Strand = Plus / Plus Query: 225 accaaggacaacatccgcatggcgatgcactggctggtgcaggggtgcagctacggcgac 284 ||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| Sbjct: 39 accaaggacaacatccggatggcgatgcagtggctggtgcaggggtgcagcagcggcgac 98 Query: 285 tccctggtgttccagttctccggcatgggcgcgcaggtccccgacgacgacggcgacgag 344 |||||||||||||| ||||| || |||||||||||||| |||||| ||| |||||||| Sbjct: 99 tccctggtgttccacttctctgggctgggcgcgcaggtcgccgacgcggactgcgacgag 158 Query: 345 ctggacggcatggacgaggccctctgccccgtggactcgttccagcagggccccatcctg 404 | |||||| ||||||||| ||||||| ||||||||||||||| |||||||||||||| Sbjct: 159 caggacgggtacgacgaggccatctgcccggtggactcgttccagaagggccccatcctg 218 Query: 405 gacgacgagatcaacgaggccatcgtccgcccgctcgtgcacggcgtcaagctgcacgcc 464 |||||||||||||||||| |||||||||| ||||| |||| ||||| |||||| |||||| Sbjct: 219 gacgacgagatcaacgagaccatcgtccggccgctggtgcccggcgccaagctccacgcc 278 Query: 465 atcgtcgatgcctgccacagcgccaccgtcctcgacctcccct 507 ||||||| || |||||||||| |||||||||||||||||| Sbjct: 279 gtcgtcgacgcgtgccacagcgattccgtcctcgacctcccct 321
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 297 bits (150), Expect = 2e-77 Identities = 270/310 (87%) Strand = Plus / Minus Query: 198 gaggagaggaacccgtgcaggcagccgaccaaggacaacatccgcatggcgatgcactgg 257 ||||||| | ||||||||||| | |||| ||||| |||||| | ||||||||| ||||| Sbjct: 15370069 gaggagaaggacccgtgcaggttggcgacgaaggagaacatcaggatggcgatgaactgg 15370010 Query: 258 ctggtgcaggggtgcagctacggcgactccctggtgttccagttctccggcatgggcgcg 317 ||||||||||||||||||| ||| ||||| ||||||||||| |||||||| || || | | Sbjct: 15370009 ctggtgcaggggtgcagctccggtgactcgctggtgttccacttctccgggatcggggtg 15369950 Query: 318 caggtccccgacgacgacggcgacgagctggacggcatggacgaggccctctgccccgtg 377 ||||| || |||||||||||||||||| ||||||| |||||||| |||||||| || Sbjct: 15369949 caggtgccggacgacgacggcgacgaggtggacgggtacgacgaggcgatctgccccatg 15369890 Query: 378 gactcgttccagcagggccccatcctggacgacgagatcaacgaggccatcgtccgcccg 437 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 15369889 gactcgttcagccagggccccatcctggacgacgagatcaacgaggccatcgtccgcccg 15369830 Query: 438 ctcgtgcacggcgtcaagctgcacgccatcgtcgatgcctgccacagcgccaccgtcctc 497 ||||| ||||||| |||||| |||||| ||||||| ||| |||||| ||||||||||| Sbjct: 15369829 ctcgtccacggcgccaagctccacgccgtcgtcgacgccgagcacagctccaccgtcctc 15369770 Query: 498 gacctcccct 507 |||||||||| Sbjct: 15369769 gacctcccct 15369760 Score = 143 bits (72), Expect = 7e-31 Identities = 84/88 (95%) Strand = Plus / Minus Query: 106 tgaggggccccatcaacgacgtcaagtgcatgcgatacctcctcaccgagcgcttcggct 165 ||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 15370254 tgaggggccccgtcaacgacgtcaagtgcatgcggtacctcctctgcgagcgcttcggct 15370195 Query: 166 tccccaacgactgcgtcctcatcctcac 193 |||||||||||||||||||||||||||| Sbjct: 15370194 tccccaacgactgcgtcctcatcctcac 15370167 Score = 89.7 bits (45), Expect = 1e-14 Identities = 96/113 (84%) Strand = Plus / Minus Query: 398 catcctggacgacgagatcaacgaggccatcgtccgcccgctcgtgcacggcgtcaagct 457 |||| |||||||||| |||||||| ||||||||| |||||| || ||||| ||||| Sbjct: 15409806 catcttggacgacgacatcaacgatgccatcgtcaagccgctcacccaaggcgtgaagct 15409747 Query: 458 gcacgccatcgtcgatgcctgccacagcgccaccgtcctcgacctcccctacc 510 |||||||||| |||| |||||||||||| |||| | |||||||||||||||| Sbjct: 15409746 gcacgccatcatcgacacctgccacagcggcaccatgctcgacctcccctacc 15409694 Score = 83.8 bits (42), Expect = 6e-13 Identities = 93/110 (84%) Strand = Plus / Minus Query: 398 catcctggacgacgagatcaacgaggccatcgtccgcccgctcgtgcacggcgtcaagct 457 |||||| |||||||||||||||||| |||||||||| || ||||| |||||| ||||| Sbjct: 15424423 catcctcgacgacgagatcaacgagaccatcgtccggccactcgtcgccggcgtgaagct 15424364 Query: 458 gcacgccatcgtcgatgcctgccacagcgccaccgtcctcgacctcccct 507 || |||||||| || | |||||||||| |||| |||| |||||||||| Sbjct: 15424363 ccatgccatcgtggacacgtgccacagcggcaccatcctggacctcccct 15424314 Score = 81.8 bits (41), Expect = 2e-12 Identities = 92/109 (84%) Strand = Plus / Minus Query: 399 atcctggacgacgagatcaacgaggccatcgtccgcccgctcgtgcacggcgtcaagctg 458 ||||| |||||||||||||||||| |||||||||| || ||||| ||||| ||||| Sbjct: 15402359 atcctcgacgacgagatcaacgagaccatcgtccggcccctcgtcgccggcgcgaagctc 15402300 Query: 459 cacgccatcgtcgatgcctgccacagcgccaccgtcctcgacctcccct 507 ||||||||||| || | |||||||||| |||| |||| |||||||||| Sbjct: 15402299 cacgccatcgtggacacgtgccacagcggcaccatcctggacctcccct 15402251 Score = 65.9 bits (33), Expect = 1e-07 Identities = 111/137 (81%) Strand = Plus / Minus Query: 245 ggcgatgcactggctggtgcaggggtgcagctacggcgactccctggtgttccagttctc 304 |||||||| ||||||||| | ||||||||| ||||||||| |||||| |||| ||||| Sbjct: 15424576 ggcgatgcggtggctggtggaagggtgcagcgccggcgactcgctggtgctccacttctc 15424517 Query: 305 cggcatgggcgcgcaggtccccgacgacgacggcgacgagctggacggcatggacgaggc 364 |||| |||| |||| | |||| ||||||||||||| ||||||| |||||||| Sbjct: 15424516 cggccacggcgtgcagaagctggacgtcgacggcgacgaggcggacggctacgacgaggc 15424457 Query: 365 cctctgccccgtggact 381 || ||||||||||||| Sbjct: 15424456 gctgtgccccgtggact 15424440 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 255 tggctggtgcaggggtgcagctacggcgactccctggtgttccagttctccggc 308 ||||||||| |||||||| || ||||||||| ||||||||||| ||||||||| Sbjct: 15409949 tggctggtggaggggtgccgcgccggcgactcgctggtgttccacttctccggc 15409896 Score = 58.0 bits (29), Expect = 3e-05 Identities = 77/93 (82%) Strand = Plus / Minus Query: 101 cgagctgaggggccccatcaacgacgtcaagtgcatgcgatacctcctcaccgagcgctt 160 |||||| | |||| || ||||||||||||| |||||| | ||||||| ||||||||| Sbjct: 15424794 cgagctcaagggcaccgtcaacgacgtcaactgcatgtccttcctcctccgcgagcgctt 15424735 Query: 161 cggcttccccaacgactgcgtcctcatcctcac 193 || ||||||| ||||||| ||||| ||||||| Sbjct: 15424734 cgccttccccgccgactgcatcctcgtcctcac 15424702 Score = 50.1 bits (25), Expect = 0.008 Identities = 109/137 (79%) Strand = Plus / Minus Query: 245 ggcgatgcactggctggtgcaggggtgcagctacggcgactccctggtgttccagttctc 304 |||||||| ||||||||| | |||||| | ||||||||| ||||||||||| ||||| Sbjct: 15402513 ggcgatgcggtggctggtggaagggtgcgacgccggcgactcgctggtgttccacttctc 15402454 Query: 305 cggcatgggcgcgcaggtccccgacgacgacggcgacgagctggacggcatggacgaggc 364 |||| |||| |||| | |||| ||||||||||| |||||||| ||||||| Sbjct: 15402453 cggccacggcgtgcagaagctggacgtgaacggcgacgaggtggacggctacaacgaggc 15402394 Query: 365 cctctgccccgtggact 381 |||||||||||||||| Sbjct: 15402393 gctctgccccgtggact 15402377 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Minus Query: 327 gacgacgacggcgacgagctggacggcatggacgaggccctctgccccgtggact 381 |||||| ||||||||||| |||||||| ||||||| |||||||| ||||||| Sbjct: 15409877 gacgacaacggcgacgaggtggacggccgagacgaggagctctgcccagtggact 15409823 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 cgacgacgacggcgacgagc 345 |||||||||||||||||||| Sbjct: 12301015 cgacgacgacggcgacgagc 12300996
>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence, complete sequence Length = 164705 Score = 297 bits (150), Expect = 2e-77 Identities = 270/310 (87%) Strand = Plus / Plus Query: 198 gaggagaggaacccgtgcaggcagccgaccaaggacaacatccgcatggcgatgcactgg 257 ||||||| | ||||||||||| | |||| ||||| |||||| | ||||||||| ||||| Sbjct: 131457 gaggagaaggacccgtgcaggttggcgacgaaggagaacatcaggatggcgatgaactgg 131516 Query: 258 ctggtgcaggggtgcagctacggcgactccctggtgttccagttctccggcatgggcgcg 317 ||||||||||||||||||| ||| ||||| ||||||||||| |||||||| || || | | Sbjct: 131517 ctggtgcaggggtgcagctccggtgactcgctggtgttccacttctccgggatcggggtg 131576 Query: 318 caggtccccgacgacgacggcgacgagctggacggcatggacgaggccctctgccccgtg 377 ||||| || |||||||||||||||||| ||||||| |||||||| |||||||| || Sbjct: 131577 caggtgccggacgacgacggcgacgaggtggacgggtacgacgaggcgatctgccccatg 131636 Query: 378 gactcgttccagcagggccccatcctggacgacgagatcaacgaggccatcgtccgcccg 437 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 131637 gactcgttcagccagggccccatcctggacgacgagatcaacgaggccatcgtccgcccg 131696 Query: 438 ctcgtgcacggcgtcaagctgcacgccatcgtcgatgcctgccacagcgccaccgtcctc 497 ||||| ||||||| |||||| |||||| ||||||| ||| |||||| ||||||||||| Sbjct: 131697 ctcgtccacggcgccaagctccacgccgtcgtcgacgccgagcacagctccaccgtcctc 131756 Query: 498 gacctcccct 507 |||||||||| Sbjct: 131757 gacctcccct 131766 Score = 143 bits (72), Expect = 7e-31 Identities = 84/88 (95%) Strand = Plus / Plus Query: 106 tgaggggccccatcaacgacgtcaagtgcatgcgatacctcctcaccgagcgcttcggct 165 ||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 131272 tgaggggccccgtcaacgacgtcaagtgcatgcggtacctcctctgcgagcgcttcggct 131331 Query: 166 tccccaacgactgcgtcctcatcctcac 193 |||||||||||||||||||||||||||| Sbjct: 131332 tccccaacgactgcgtcctcatcctcac 131359 Score = 89.7 bits (45), Expect = 1e-14 Identities = 96/113 (84%) Strand = Plus / Plus Query: 398 catcctggacgacgagatcaacgaggccatcgtccgcccgctcgtgcacggcgtcaagct 457 |||| |||||||||| |||||||| ||||||||| |||||| || ||||| ||||| Sbjct: 91720 catcttggacgacgacatcaacgatgccatcgtcaagccgctcacccaaggcgtgaagct 91779 Query: 458 gcacgccatcgtcgatgcctgccacagcgccaccgtcctcgacctcccctacc 510 |||||||||| |||| |||||||||||| |||| | |||||||||||||||| Sbjct: 91780 gcacgccatcatcgacacctgccacagcggcaccatgctcgacctcccctacc 91832 Score = 83.8 bits (42), Expect = 6e-13 Identities = 93/110 (84%) Strand = Plus / Plus Query: 398 catcctggacgacgagatcaacgaggccatcgtccgcccgctcgtgcacggcgtcaagct 457 |||||| |||||||||||||||||| |||||||||| || ||||| |||||| ||||| Sbjct: 77103 catcctcgacgacgagatcaacgagaccatcgtccggccactcgtcgccggcgtgaagct 77162 Query: 458 gcacgccatcgtcgatgcctgccacagcgccaccgtcctcgacctcccct 507 || |||||||| || | |||||||||| |||| |||| |||||||||| Sbjct: 77163 ccatgccatcgtggacacgtgccacagcggcaccatcctggacctcccct 77212 Score = 81.8 bits (41), Expect = 2e-12 Identities = 92/109 (84%) Strand = Plus / Plus Query: 399 atcctggacgacgagatcaacgaggccatcgtccgcccgctcgtgcacggcgtcaagctg 458 ||||| |||||||||||||||||| |||||||||| || ||||| ||||| ||||| Sbjct: 99167 atcctcgacgacgagatcaacgagaccatcgtccggcccctcgtcgccggcgcgaagctc 99226 Query: 459 cacgccatcgtcgatgcctgccacagcgccaccgtcctcgacctcccct 507 ||||||||||| || | |||||||||| |||| |||| |||||||||| Sbjct: 99227 cacgccatcgtggacacgtgccacagcggcaccatcctggacctcccct 99275 Score = 65.9 bits (33), Expect = 1e-07 Identities = 111/137 (81%) Strand = Plus / Plus Query: 245 ggcgatgcactggctggtgcaggggtgcagctacggcgactccctggtgttccagttctc 304 |||||||| ||||||||| | ||||||||| ||||||||| |||||| |||| ||||| Sbjct: 76950 ggcgatgcggtggctggtggaagggtgcagcgccggcgactcgctggtgctccacttctc 77009 Query: 305 cggcatgggcgcgcaggtccccgacgacgacggcgacgagctggacggcatggacgaggc 364 |||| |||| |||| | |||| ||||||||||||| ||||||| |||||||| Sbjct: 77010 cggccacggcgtgcagaagctggacgtcgacggcgacgaggcggacggctacgacgaggc 77069 Query: 365 cctctgccccgtggact 381 || ||||||||||||| Sbjct: 77070 gctgtgccccgtggact 77086 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 255 tggctggtgcaggggtgcagctacggcgactccctggtgttccagttctccggc 308 ||||||||| |||||||| || ||||||||| ||||||||||| ||||||||| Sbjct: 91577 tggctggtggaggggtgccgcgccggcgactcgctggtgttccacttctccggc 91630 Score = 58.0 bits (29), Expect = 3e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 101 cgagctgaggggccccatcaacgacgtcaagtgcatgcgatacctcctcaccgagcgctt 160 |||||| | |||| || ||||||||||||| |||||| | ||||||| ||||||||| Sbjct: 76732 cgagctcaagggcaccgtcaacgacgtcaactgcatgtccttcctcctccgcgagcgctt 76791 Query: 161 cggcttccccaacgactgcgtcctcatcctcac 193 || ||||||| ||||||| ||||| ||||||| Sbjct: 76792 cgccttccccgccgactgcatcctcgtcctcac 76824 Score = 50.1 bits (25), Expect = 0.008 Identities = 109/137 (79%) Strand = Plus / Plus Query: 245 ggcgatgcactggctggtgcaggggtgcagctacggcgactccctggtgttccagttctc 304 |||||||| ||||||||| | |||||| | ||||||||| ||||||||||| ||||| Sbjct: 99013 ggcgatgcggtggctggtggaagggtgcgacgccggcgactcgctggtgttccacttctc 99072 Query: 305 cggcatgggcgcgcaggtccccgacgacgacggcgacgagctggacggcatggacgaggc 364 |||| |||| |||| | |||| ||||||||||| |||||||| ||||||| Sbjct: 99073 cggccacggcgtgcagaagctggacgtgaacggcgacgaggtggacggctacaacgaggc 99132 Query: 365 cctctgccccgtggact 381 |||||||||||||||| Sbjct: 99133 gctctgccccgtggact 99149 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Plus Query: 327 gacgacgacggcgacgagctggacggcatggacgaggccctctgccccgtggact 381 |||||| ||||||||||| |||||||| ||||||| |||||||| ||||||| Sbjct: 91649 gacgacaacggcgacgaggtggacggccgagacgaggagctctgcccagtggact 91703
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 297 bits (150), Expect = 2e-77 Identities = 270/310 (87%) Strand = Plus / Minus Query: 198 gaggagaggaacccgtgcaggcagccgaccaaggacaacatccgcatggcgatgcactgg 257 ||||||| | ||||||||||| | |||| ||||| |||||| | ||||||||| ||||| Sbjct: 15364603 gaggagaaggacccgtgcaggttggcgacgaaggagaacatcaggatggcgatgaactgg 15364544 Query: 258 ctggtgcaggggtgcagctacggcgactccctggtgttccagttctccggcatgggcgcg 317 ||||||||||||||||||| ||| ||||| ||||||||||| |||||||| || || | | Sbjct: 15364543 ctggtgcaggggtgcagctccggtgactcgctggtgttccacttctccgggatcggggtg 15364484 Query: 318 caggtccccgacgacgacggcgacgagctggacggcatggacgaggccctctgccccgtg 377 ||||| || |||||||||||||||||| ||||||| |||||||| |||||||| || Sbjct: 15364483 caggtgccggacgacgacggcgacgaggtggacgggtacgacgaggcgatctgccccatg 15364424 Query: 378 gactcgttccagcagggccccatcctggacgacgagatcaacgaggccatcgtccgcccg 437 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 15364423 gactcgttcagccagggccccatcctggacgacgagatcaacgaggccatcgtccgcccg 15364364 Query: 438 ctcgtgcacggcgtcaagctgcacgccatcgtcgatgcctgccacagcgccaccgtcctc 497 ||||| ||||||| |||||| |||||| ||||||| ||| |||||| ||||||||||| Sbjct: 15364363 ctcgtccacggcgccaagctccacgccgtcgtcgacgccgagcacagctccaccgtcctc 15364304 Query: 498 gacctcccct 507 |||||||||| Sbjct: 15364303 gacctcccct 15364294 Score = 143 bits (72), Expect = 7e-31 Identities = 84/88 (95%) Strand = Plus / Minus Query: 106 tgaggggccccatcaacgacgtcaagtgcatgcgatacctcctcaccgagcgcttcggct 165 ||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 15364788 tgaggggccccgtcaacgacgtcaagtgcatgcggtacctcctctgcgagcgcttcggct 15364729 Query: 166 tccccaacgactgcgtcctcatcctcac 193 |||||||||||||||||||||||||||| Sbjct: 15364728 tccccaacgactgcgtcctcatcctcac 15364701 Score = 89.7 bits (45), Expect = 1e-14 Identities = 96/113 (84%) Strand = Plus / Minus Query: 398 catcctggacgacgagatcaacgaggccatcgtccgcccgctcgtgcacggcgtcaagct 457 |||| |||||||||| |||||||| ||||||||| |||||| || ||||| ||||| Sbjct: 15404340 catcttggacgacgacatcaacgatgccatcgtcaagccgctcacccaaggcgtgaagct 15404281 Query: 458 gcacgccatcgtcgatgcctgccacagcgccaccgtcctcgacctcccctacc 510 |||||||||| |||| |||||||||||| |||| | |||||||||||||||| Sbjct: 15404280 gcacgccatcatcgacacctgccacagcggcaccatgctcgacctcccctacc 15404228 Score = 83.8 bits (42), Expect = 6e-13 Identities = 93/110 (84%) Strand = Plus / Minus Query: 398 catcctggacgacgagatcaacgaggccatcgtccgcccgctcgtgcacggcgtcaagct 457 |||||| |||||||||||||||||| |||||||||| || ||||| |||||| ||||| Sbjct: 15418957 catcctcgacgacgagatcaacgagaccatcgtccggccactcgtcgccggcgtgaagct 15418898 Query: 458 gcacgccatcgtcgatgcctgccacagcgccaccgtcctcgacctcccct 507 || |||||||| || | |||||||||| |||| |||| |||||||||| Sbjct: 15418897 ccatgccatcgtggacacgtgccacagcggcaccatcctggacctcccct 15418848 Score = 81.8 bits (41), Expect = 2e-12 Identities = 92/109 (84%) Strand = Plus / Minus Query: 399 atcctggacgacgagatcaacgaggccatcgtccgcccgctcgtgcacggcgtcaagctg 458 ||||| |||||||||||||||||| |||||||||| || ||||| ||||| ||||| Sbjct: 15396893 atcctcgacgacgagatcaacgagaccatcgtccggcccctcgtcgccggcgcgaagctc 15396834 Query: 459 cacgccatcgtcgatgcctgccacagcgccaccgtcctcgacctcccct 507 ||||||||||| || | |||||||||| |||| |||| |||||||||| Sbjct: 15396833 cacgccatcgtggacacgtgccacagcggcaccatcctggacctcccct 15396785 Score = 65.9 bits (33), Expect = 1e-07 Identities = 111/137 (81%) Strand = Plus / Minus Query: 245 ggcgatgcactggctggtgcaggggtgcagctacggcgactccctggtgttccagttctc 304 |||||||| ||||||||| | ||||||||| ||||||||| |||||| |||| ||||| Sbjct: 15419110 ggcgatgcggtggctggtggaagggtgcagcgccggcgactcgctggtgctccacttctc 15419051 Query: 305 cggcatgggcgcgcaggtccccgacgacgacggcgacgagctggacggcatggacgaggc 364 |||| |||| |||| | |||| ||||||||||||| ||||||| |||||||| Sbjct: 15419050 cggccacggcgtgcagaagctggacgtcgacggcgacgaggcggacggctacgacgaggc 15418991 Query: 365 cctctgccccgtggact 381 || ||||||||||||| Sbjct: 15418990 gctgtgccccgtggact 15418974 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 255 tggctggtgcaggggtgcagctacggcgactccctggtgttccagttctccggc 308 ||||||||| |||||||| || ||||||||| ||||||||||| ||||||||| Sbjct: 15404483 tggctggtggaggggtgccgcgccggcgactcgctggtgttccacttctccggc 15404430 Score = 58.0 bits (29), Expect = 3e-05 Identities = 77/93 (82%) Strand = Plus / Minus Query: 101 cgagctgaggggccccatcaacgacgtcaagtgcatgcgatacctcctcaccgagcgctt 160 |||||| | |||| || ||||||||||||| |||||| | ||||||| ||||||||| Sbjct: 15419328 cgagctcaagggcaccgtcaacgacgtcaactgcatgtccttcctcctccgcgagcgctt 15419269 Query: 161 cggcttccccaacgactgcgtcctcatcctcac 193 || ||||||| ||||||| ||||| ||||||| Sbjct: 15419268 cgccttccccgccgactgcatcctcgtcctcac 15419236 Score = 50.1 bits (25), Expect = 0.008 Identities = 109/137 (79%) Strand = Plus / Minus Query: 245 ggcgatgcactggctggtgcaggggtgcagctacggcgactccctggtgttccagttctc 304 |||||||| ||||||||| | |||||| | ||||||||| ||||||||||| ||||| Sbjct: 15397047 ggcgatgcggtggctggtggaagggtgcgacgccggcgactcgctggtgttccacttctc 15396988 Query: 305 cggcatgggcgcgcaggtccccgacgacgacggcgacgagctggacggcatggacgaggc 364 |||| |||| |||| | |||| ||||||||||| |||||||| ||||||| Sbjct: 15396987 cggccacggcgtgcagaagctggacgtgaacggcgacgaggtggacggctacaacgaggc 15396928 Query: 365 cctctgccccgtggact 381 |||||||||||||||| Sbjct: 15396927 gctctgccccgtggact 15396911 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Minus Query: 327 gacgacgacggcgacgagctggacggcatggacgaggccctctgccccgtggact 381 |||||| ||||||||||| |||||||| ||||||| |||||||| ||||||| Sbjct: 15404411 gacgacaacggcgacgaggtggacggccgagacgaggagctctgcccagtggact 15404357 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 cgacgacgacggcgacgagc 345 |||||||||||||||||||| Sbjct: 12297778 cgacgacgacggcgacgagc 12297759
>ref|XM_470794.1| Oryza sativa (japonica cultivar-group), mRNA Length = 909 Score = 89.7 bits (45), Expect = 1e-14 Identities = 96/113 (84%) Strand = Plus / Plus Query: 398 catcctggacgacgagatcaacgaggccatcgtccgcccgctcgtgcacggcgtcaagct 457 |||| |||||||||| |||||||| ||||||||| |||||| || ||||| ||||| Sbjct: 369 catcttggacgacgacatcaacgatgccatcgtcaagccgctcacccaaggcgtgaagct 428 Query: 458 gcacgccatcgtcgatgcctgccacagcgccaccgtcctcgacctcccctacc 510 |||||||||| |||| |||||||||||| |||| | |||||||||||||||| Sbjct: 429 gcacgccatcatcgacacctgccacagcggcaccatgctcgacctcccctacc 481 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 255 tggctggtgcaggggtgcagctacggcgactccctggtgttccagttctccggc 308 ||||||||| |||||||| || ||||||||| ||||||||||| ||||||||| Sbjct: 226 tggctggtggaggggtgccgcgccggcgactcgctggtgttccacttctccggc 279 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Plus Query: 327 gacgacgacggcgacgagctggacggcatggacgaggccctctgccccgtggact 381 |||||| ||||||||||| |||||||| ||||||| |||||||| ||||||| Sbjct: 298 gacgacaacggcgacgaggtggacggccgagacgaggagctctgcccagtggact 352
>dbj|AK063170.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-G09, full insert sequence Length = 1347 Score = 89.7 bits (45), Expect = 1e-14 Identities = 96/113 (84%) Strand = Plus / Plus Query: 398 catcctggacgacgagatcaacgaggccatcgtccgcccgctcgtgcacggcgtcaagct 457 |||| |||||||||| |||||||| ||||||||| |||||| || ||||| ||||| Sbjct: 403 catcttggacgacgacatcaacgatgccatcgtcaagccgctcacccaaggcgtgaagct 462 Query: 458 gcacgccatcgtcgatgcctgccacagcgccaccgtcctcgacctcccctacc 510 |||||||||| |||| |||||||||||| |||| | |||||||||||||||| Sbjct: 463 gcacgccatcatcgacacctgccacagcggcaccatgctcgacctcccctacc 515 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 255 tggctggtgcaggggtgcagctacggcgactccctggtgttccagttctccggc 308 ||||||||| |||||||| || ||||||||| ||||||||||| ||||||||| Sbjct: 260 tggctggtggaggggtgccgcgccggcgactcgctggtgttccacttctccggc 313 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Plus Query: 327 gacgacgacggcgacgagctggacggcatggacgaggccctctgccccgtggact 381 |||||| ||||||||||| |||||||| ||||||| |||||||| ||||||| Sbjct: 332 gacgacaacggcgacgaggtggacggccgagacgaggagctctgcccagtggact 386
>ref|XM_470796.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1110 Score = 83.8 bits (42), Expect = 6e-13 Identities = 93/110 (84%) Strand = Plus / Plus Query: 398 catcctggacgacgagatcaacgaggccatcgtccgcccgctcgtgcacggcgtcaagct 457 |||||| |||||||||||||||||| |||||||||| || ||||| |||||| ||||| Sbjct: 606 catcctcgacgacgagatcaacgagaccatcgtccggccactcgtcgccggcgtgaagct 665 Query: 458 gcacgccatcgtcgatgcctgccacagcgccaccgtcctcgacctcccct 507 || |||||||| || | |||||||||| |||| |||| |||||||||| Sbjct: 666 ccatgccatcgtggacacgtgccacagcggcaccatcctggacctcccct 715 Score = 65.9 bits (33), Expect = 1e-07 Identities = 111/137 (81%) Strand = Plus / Plus Query: 245 ggcgatgcactggctggtgcaggggtgcagctacggcgactccctggtgttccagttctc 304 |||||||| ||||||||| | ||||||||| ||||||||| |||||| |||| ||||| Sbjct: 453 ggcgatgcggtggctggtggaagggtgcagcgccggcgactcgctggtgctccacttctc 512 Query: 305 cggcatgggcgcgcaggtccccgacgacgacggcgacgagctggacggcatggacgaggc 364 |||| |||| |||| | |||| ||||||||||||| ||||||| |||||||| Sbjct: 513 cggccacggcgtgcagaagctggacgtcgacggcgacgaggcggacggctacgacgaggc 572 Query: 365 cctctgccccgtggact 381 || ||||||||||||| Sbjct: 573 gctgtgccccgtggact 589 Score = 58.0 bits (29), Expect = 3e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 101 cgagctgaggggccccatcaacgacgtcaagtgcatgcgatacctcctcaccgagcgctt 160 |||||| | |||| || ||||||||||||| |||||| | ||||||| ||||||||| Sbjct: 309 cgagctcaagggcaccgtcaacgacgtcaactgcatgtccttcctcctccgcgagcgctt 368 Query: 161 cggcttccccaacgactgcgtcctcatcctcac 193 || ||||||| ||||||| ||||| ||||||| Sbjct: 369 cgccttccccgccgactgcatcctcgtcctcac 401
>ref|XM_470792.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1203 Score = 81.8 bits (41), Expect = 2e-12 Identities = 92/109 (84%) Strand = Plus / Plus Query: 399 atcctggacgacgagatcaacgaggccatcgtccgcccgctcgtgcacggcgtcaagctg 458 ||||| |||||||||||||||||| |||||||||| || ||||| ||||| ||||| Sbjct: 673 atcctcgacgacgagatcaacgagaccatcgtccggcccctcgtcgccggcgcgaagctc 732 Query: 459 cacgccatcgtcgatgcctgccacagcgccaccgtcctcgacctcccct 507 ||||||||||| || | |||||||||| |||| |||| |||||||||| Sbjct: 733 cacgccatcgtggacacgtgccacagcggcaccatcctggacctcccct 781 Score = 50.1 bits (25), Expect = 0.008 Identities = 109/137 (79%) Strand = Plus / Plus Query: 245 ggcgatgcactggctggtgcaggggtgcagctacggcgactccctggtgttccagttctc 304 |||||||| ||||||||| | |||||| | ||||||||| ||||||||||| ||||| Sbjct: 519 ggcgatgcggtggctggtggaagggtgcgacgccggcgactcgctggtgttccacttctc 578 Query: 305 cggcatgggcgcgcaggtccccgacgacgacggcgacgagctggacggcatggacgaggc 364 |||| |||| |||| | |||| ||||||||||| |||||||| ||||||| Sbjct: 579 cggccacggcgtgcagaagctggacgtgaacggcgacgaggtggacggctacaacgaggc 638 Query: 365 cctctgccccgtggact 381 |||||||||||||||| Sbjct: 639 gctctgccccgtggact 655
>ref|NM_197782.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0027P10.23), mRNA Length = 1137 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 116 catcaacgacgtcaagtgcatgcgatacctcctcaccgagcgcttcggcttccccaacga 175 ||||||||||| |||||||||||| |||||||||| ||||||| ||||||| |||| Sbjct: 285 catcaacgacgccaagtgcatgcgccacctcctcacgacgcgcttccacttccccgacga 344 Query: 176 ct 177 || Sbjct: 345 ct 346
>gb|AC084763.4| Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence Length = 141307 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 116 catcaacgacgtcaagtgcatgcgatacctcctcaccgagcgcttcggcttccccaacga 175 ||||||||||| |||||||||||| |||||||||| ||||||| ||||||| |||| Sbjct: 116314 catcaacgacgccaagtgcatgcgccacctcctcacgacgcgcttccacttccccgacga 116373 Query: 176 ct 177 || Sbjct: 116374 ct 116375
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 116 catcaacgacgtcaagtgcatgcgatacctcctcaccgagcgcttcggcttccccaacga 175 ||||||||||| |||||||||||| |||||||||| ||||||| ||||||| |||| Sbjct: 21801631 catcaacgacgccaagtgcatgcgccacctcctcacgacgcgcttccacttccccgacga 21801690 Query: 176 ct 177 || Sbjct: 21801691 ct 21801692
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 116 catcaacgacgtcaagtgcatgcgatacctcctcaccgagcgcttcggcttccccaacga 175 ||||||||||| |||||||||||| |||||||||| ||||||| ||||||| |||| Sbjct: 21813294 catcaacgacgccaagtgcatgcgccacctcctcacgacgcgcttccacttccccgacga 21813353 Query: 176 ct 177 || Sbjct: 21813354 ct 21813355
>ref|XM_468337.1| Oryza sativa (japonica cultivar-group), mRNA Length = 747 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 332 cgacggcgacgagctggacggc 353 |||||||||||||||||||||| Sbjct: 231 cgacggcgacgagctggacggc 210
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 20 cccaccccggccttcggcggcg 41 |||||||||||||||||||||| Sbjct: 3270992 cccaccccggccttcggcggcg 3271013
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 332 cgacggcgacgagctggacggc 353 |||||||||||||||||||||| Sbjct: 34707386 cgacggcgacgagctggacggc 34707407 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 322 tccccgacgacgacggcgacga 343 |||||||||||||||||||||| Sbjct: 18005189 tccccgacgacgacggcgacga 18005210 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 cgacgacgacggcgacgagc 345 |||||||||||||||||||| Sbjct: 10093990 cgacgacgacggcgacgagc 10093971
>dbj|AP005303.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0016F11 Length = 134907 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 332 cgacggcgacgagctggacggc 353 |||||||||||||||||||||| Sbjct: 25234 cgacggcgacgagctggacggc 25255
>dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1116_E04 Length = 94096 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 332 cgacggcgacgagctggacggc 353 |||||||||||||||||||||| Sbjct: 64337 cgacggcgacgagctggacggc 64358
>dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1003_F04 Length = 139563 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 322 tccccgacgacgacggcgacga 343 |||||||||||||||||||||| Sbjct: 66783 tccccgacgacgacggcgacga 66804
>dbj|AK111446.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-B03, full insert sequence Length = 1587 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 332 cgacggcgacgagctggacggc 353 |||||||||||||||||||||| Sbjct: 732 cgacggcgacgagctggacggc 711
>dbj|AK068973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001O14, full insert sequence Length = 3801 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 322 tccccgacgacgacggcgacga 343 |||||||||||||||||||||| Sbjct: 270 tccccgacgacgacggcgacga 291
>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence Length = 574126 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 541 ggaggtggagggatgagcgcc 561 ||||||||||||||||||||| Sbjct: 75813 ggaggtggagggatgagcgcc 75833
>ref|NM_100097.2| Arabidopsis thaliana LOL3 (LSD ONE LIKE 3); caspase/ cysteine-type endopeptidase AT1G02170 (LOL3) mRNA, complete cds Length = 1610 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 catcaacgacgtcaagtgcatgcg 139 ||||||||||| |||||||||||| Sbjct: 297 catcaacgacgccaagtgcatgcg 320
>gb|AY147173.1| Mycobacterium fortuitum strain ATCC 49403T RpoB (rpoB) gene, complete cds Length = 3906 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 tcaccgagcgcttcggcttc 167 |||||||||||||||||||| Sbjct: 909 tcaccgagcgcttcggcttc 928
>gb|AY147172.1| Mycobacterium fortuitum strain ATCC 49404T RpoB (rpoB) gene, complete cds Length = 3914 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 tcaccgagcgcttcggcttc 167 |||||||||||||||||||| Sbjct: 914 tcaccgagcgcttcggcttc 933
>gb|AY147166.1| Mycobacterium peregrinum strain CIP 105382T RpoB (rpoB) gene, complete cds Length = 4016 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 tcaccgagcgcttcggcttc 167 |||||||||||||||||||| Sbjct: 908 tcaccgagcgcttcggcttc 927
>gb|AY147165.1| Mycobacterium fortuitum strain CIP 104534T RpoB (rpoB) gene, complete cds Length = 4405 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 tcaccgagcgcttcggcttc 167 |||||||||||||||||||| Sbjct: 1195 tcaccgagcgcttcggcttc 1214
>ref|XM_464933.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2057 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 cgacgacgacggcgacgagc 345 |||||||||||||||||||| Sbjct: 79 cgacgacgacggcgacgagc 98
>ref|NM_190381.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2376 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 ctgcacgccatcgtcgatgc 475 |||||||||||||||||||| Sbjct: 1738 ctgcacgccatcgtcgatgc 1719
>gb|AY022423.1| Oryza sativa microsatellite MRG4748 containing (ACG)X12, closest to marker R758, genomic sequence Length = 236 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 cgacgacgacggcgacgagc 345 |||||||||||||||||||| Sbjct: 126 cgacgacgacggcgacgagc 145
>gb|AY492259.1| Corynebacterium imitans strain CIP 105130 RpoB (rpoB) gene, partial cds Length = 3333 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 tcaccgagcgcttcggcttc 167 |||||||||||||||||||| Sbjct: 685 tcaccgagcgcttcggcttc 704
>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23, complete sequence Length = 191765 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 cgacgacgacggcgacgagc 345 |||||||||||||||||||| Sbjct: 141912 cgacgacgacggcgacgagc 141893
>ref|XM_957100.1| Neurospora crassa OR74A hypothetical protein (NCU05194.1) partial mRNA Length = 2919 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 227 caaggacaacatccgcatggcgat 250 |||||||||||||| ||||||||| Sbjct: 2781 caaggacaacatcctcatggcgat 2804
>ref|XM_324550.1| Neurospora crassa OR74A hypothetical protein (NCU05194.1) partial mRNA Length = 2919 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 227 caaggacaacatccgcatggcgat 250 |||||||||||||| ||||||||| Sbjct: 2781 caaggacaacatcctcatggcgat 2804
>gb|BC037100.1| Mus musculus ring finger protein 25, mRNA (cDNA clone IMAGE:5352240), partial cds Length = 1479 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 tcctgcgagctgaggggccc 115 |||||||||||||||||||| Sbjct: 1251 tcctgcgagctgaggggccc 1232
>ref|NM_021313.1| Mus musculus ring finger protein 25 (Rnf25), mRNA Length = 1478 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 tcctgcgagctgaggggccc 115 |||||||||||||||||||| Sbjct: 1243 tcctgcgagctgaggggccc 1224
>gb|DQ013294.1| Polyangium cellulosum strain So ce12 disorazole biosynthesis gene cluster, complete sequence Length = 84868 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 ttccagttctccggcatggg 313 |||||||||||||||||||| Sbjct: 35088 ttccagttctccggcatggg 35107
>gb|AC117610.7| Mus musculus chromosome 1, clone RP23-102B12, complete sequence Length = 191587 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 tcctgcgagctgaggggccc 115 |||||||||||||||||||| Sbjct: 146981 tcctgcgagctgaggggccc 147000
>gb|AY262742.1| Mycobacterium farcinogenes strain 3753 RpoB gene, complete cds Length = 3916 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 tcaccgagcgcttcggcttc 167 |||||||||||||||||||| Sbjct: 916 tcaccgagcgcttcggcttc 935
>gb|AY262738.1| Mycobacterium senegalense strain CIP 104941 RpoB gene, complete cds Length = 3898 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 tcaccgagcgcttcggcttc 167 |||||||||||||||||||| Sbjct: 916 tcaccgagcgcttcggcttc 935
>gb|AY262737.1| Mycobacterium porcinum strain CIP 105392 RpoB gene, complete cds Length = 3902 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 tcaccgagcgcttcggcttc 167 |||||||||||||||||||| Sbjct: 920 tcaccgagcgcttcggcttc 939
>ref|XM_539234.2| PREDICTED: Canis familiaris similar to Wolfram syndrome 1 (LOC482113), mRNA Length = 2667 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 327 gacgacgacggcgacgagctggacggca 354 |||||||||| ||||||||||| ||||| Sbjct: 799 gacgacgacgacgacgagctggccggca 826
>gb|AY322525.1| Arabidopsis thaliana metacaspase 1 (AMC1) mRNA, complete cds Length = 1104 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 catcaacgacgtcaagtgcatgcg 139 ||||||||||| |||||||||||| Sbjct: 297 catcaacgacgccaagtgcatgcg 320
>emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genome; segment 13/16 Length = 349746 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 ccggcatgggcgcgcaggtc 323 |||||||||||||||||||| Sbjct: 237069 ccggcatgggcgcgcaggtc 237050
>emb|BX571865.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 7/17 Length = 348813 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 catcgggatcaagtacacca 87 |||||||||||||||||||| Sbjct: 157727 catcgggatcaagtacacca 157708
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 gactgcgtcctcatcctcac 193 |||||||||||||||||||| Sbjct: 3788597 gactgcgtcctcatcctcac 3788578
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 gcatggcgatgcactggctg 260 |||||||||||||||||||| Sbjct: 2523548 gcatggcgatgcactggctg 2523529
>gb|AE005847.1| Caulobacter crescentus CB15 section 173 of 359 of the complete genome Length = 10886 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 452 caagctgcacgccatcgtcgatgc 475 ||||||||||| |||||||||||| Sbjct: 6056 caagctgcacgacatcgtcgatgc 6033
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 cttcggcggcggccgcggca 50 |||||||||||||||||||| Sbjct: 2209240 cttcggcggcggccgcggca 2209259 Score = 40.1 bits (20), Expect = 8.0 Identities = 25/27 (92%) Strand = Plus / Minus Query: 33 tcggcggcggccgcggcaagnaagcgc 59 |||||| ||||||||||||| |||||| Sbjct: 915473 tcggcgccggccgcggcaaggaagcgc 915447
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 ccccggccttcggcggcggc 43 |||||||||||||||||||| Sbjct: 1203815 ccccggccttcggcggcggc 1203796
>dbj|AK171752.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830008K23 product:ring finger protein 25, full insert sequence Length = 1452 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 tcctgcgagctgaggggccc 115 |||||||||||||||||||| Sbjct: 1241 tcctgcgagctgaggggccc 1222
>gb|BC022715.1| Mus musculus ring finger protein 25, mRNA (cDNA clone IMAGE:4488265), partial cds Length = 1473 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 tcctgcgagctgaggggccc 115 |||||||||||||||||||| Sbjct: 1229 tcctgcgagctgaggggccc 1210
>dbj|AK002399.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:0610009H16 product:ring finger protein 25, full insert sequence Length = 1475 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 tcctgcgagctgaggggccc 115 |||||||||||||||||||| Sbjct: 1264 tcctgcgagctgaggggccc 1245
>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome Length = 195859 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 cccgacgacgacggcgacga 343 |||||||||||||||||||| Sbjct: 129745 cccgacgacgacggcgacga 129764
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 cgacgacgacggcgacgagc 345 |||||||||||||||||||| Sbjct: 27266944 cgacgacgacggcgacgagc 27266925
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 ctgcacgccatcgtcgatgc 475 |||||||||||||||||||| Sbjct: 35155167 ctgcacgccatcgtcgatgc 35155148
>dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0031D02 Length = 183692 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 ctgcacgccatcgtcgatgc 475 |||||||||||||||||||| Sbjct: 34251 ctgcacgccatcgtcgatgc 34232
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 326 cgacgacgacggcgacgagctgga 349 |||||||||||||||||| ||||| Sbjct: 3794353 cgacgacgacggcgacgacctgga 3794376
>gb|AY189899.1| Pseudorabies virus strain Ea UL15 (UL15), UL17 (UL17), UL16 (UL16), and UL14 (UL14) genes, complete cds; and UL13 (UL13) gene, partial cds Length = 6671 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 ccgacgacgacggcgacgag 344 |||||||||||||||||||| Sbjct: 4985 ccgacgacgacggcgacgag 4966
>ref|XM_576586.1| PREDICTED: Rattus norvegicus ring finger protein 25 (predicted) (Rnf25_predicted), mRNA Length = 1454 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 tcctgcgagctgaggggccc 115 |||||||||||||||||||| Sbjct: 1242 tcctgcgagctgaggggccc 1223
>gb|AC064879.3|AC064879 Arabidopsis thaliana chromosome I BAC T6A9 genomic sequence, complete sequence Length = 109180 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 catcaacgacgtcaagtgcatgcg 139 ||||||||||| |||||||||||| Sbjct: 7195 catcaacgacgccaagtgcatgcg 7218
>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0029K10, from chromosome 3, complete sequence Length = 135940 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 cgacgacgacggcgacgagc 345 |||||||||||||||||||| Sbjct: 70548 cgacgacgacggcgacgagc 70529
>dbj|AK177129.1| Mus musculus cDNA, clone:Y0G0101L05, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000027357, based on BLAT search Length = 341 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 tcctgcgagctgaggggccc 115 |||||||||||||||||||| Sbjct: 297 tcctgcgagctgaggggccc 278
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 tcaccgagcgcttcggcttc 167 |||||||||||||||||||| Sbjct: 532306 tcaccgagcgcttcggcttc 532325
>gb|AE005078.1| Halobacterium sp. NRC-1 section 109 of 170 of the complete genome Length = 11449 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 cccgacgacgacggcgacga 343 |||||||||||||||||||| Sbjct: 4647 cccgacgacgacggcgacga 4666
>dbj|AP004771.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0413A11 Length = 188440 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 cgacgacgacggcgacgagc 345 |||||||||||||||||||| Sbjct: 168683 cgacgacgacggcgacgagc 168664
>dbj|AP004770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017G06 Length = 150628 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 cgacgacgacggcgacgagc 345 |||||||||||||||||||| Sbjct: 41684 cgacgacgacggcgacgagc 41665
>ref|XM_316513.2| Anopheles gambiae str. PEST ENSANGP00000013494 (ENSANGG00000011005), partial mRNA Length = 2530 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 326 cgacgacgacggcgacgagctgga 349 ||||||||||| |||||||||||| Sbjct: 105 cgacgacgacgacgacgagctgga 128
>dbj|AK108674.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-H12, full insert sequence Length = 1783 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 cgacgacgacggcgacgagc 345 |||||||||||||||||||| Sbjct: 326 cgacgacgacggcgacgagc 345
>dbj|AK071664.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106B19, full insert sequence Length = 2056 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 cgacgacgacggcgacgagc 345 |||||||||||||||||||| Sbjct: 78 cgacgacgacggcgacgagc 97
>dbj|AK071170.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080J08, full insert sequence Length = 1468 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 cgacgacgacggcgacgagc 345 |||||||||||||||||||| Sbjct: 683 cgacgacgacggcgacgagc 702
>gb|BC048821.1| Mus musculus ring finger protein 25, mRNA (cDNA clone MGC:54528 IMAGE:3966642), complete cds Length = 1525 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 tcctgcgagctgaggggccc 115 |||||||||||||||||||| Sbjct: 1251 tcctgcgagctgaggggccc 1232
>gb|AF171060.1|AF171060 Mus musculus RING finger protein AO7 mRNA, complete cds Length = 1478 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 tcctgcgagctgaggggccc 115 |||||||||||||||||||| Sbjct: 1243 tcctgcgagctgaggggccc 1224
>gb|AY105507.1| Zea mays PCO119884 mRNA sequence Length = 1145 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 326 cgacgacgacggcgacgagctggacggc 353 |||||||||||||| ||||| ||||||| Sbjct: 119 cgacgacgacggcggcgagcaggacggc 92
>emb|AL160471.5|CNS01RH4 Human chromosome 14 DNA sequence BAC R-304L20 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 193559 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 ctggaggtggagggatgagc 558 |||||||||||||||||||| Sbjct: 177719 ctggaggtggagggatgagc 177738
>gb|BC087046.1| Rattus norvegicus ring finger protein 25, mRNA (cDNA clone MGC:93844 IMAGE:7111464), complete cds Length = 2992 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 tcctgcgagctgaggggccc 115 |||||||||||||||||||| Sbjct: 1285 tcctgcgagctgaggggccc 1266
>ref|NM_001012004.1| Rattus norvegicus ring finger protein 25 (Rnf25), mRNA Length = 2992 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 tcctgcgagctgaggggccc 115 |||||||||||||||||||| Sbjct: 1285 tcctgcgagctgaggggccc 1266
>gb|AY219826.1| Arabidopsis thaliana metacaspase 1 (At1g02170) mRNA, complete cds Length = 1104 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 catcaacgacgtcaagtgcatgcg 139 ||||||||||| |||||||||||| Sbjct: 297 catcaacgacgccaagtgcatgcg 320
>emb|AJ874112.1| Polyangium cellulosum disA gene, disB gene, disC gene, disD gene, ORF1, ORF2, ORF3, ORF4, ORF5, ORF6, ORF7, ORF8, ORF9, ORF10, ORF11, ORF12, ORF13, ORF14, ORF15, ORF16, ORF17, ORF18 and ORF19 Length = 86080 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 ttccagttctccggcatggg 313 |||||||||||||||||||| Sbjct: 35006 ttccagttctccggcatggg 35025
>emb|AL805958.8| Mouse DNA sequence from clone RP23-179F9 on chromosome 2, complete sequence Length = 198627 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 514 gcaccgtgtccaagcagacc 533 |||||||||||||||||||| Sbjct: 55078 gcaccgtgtccaagcagacc 55097
>gb|U89959.1| Arabidopsis thaliana BAC T7I23, complete sequence Length = 106973 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 catcaacgacgtcaagtgcatgcg 139 ||||||||||| |||||||||||| Sbjct: 62567 catcaacgacgccaagtgcatgcg 62590 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,859,787 Number of Sequences: 3902068 Number of extensions: 3859787 Number of successful extensions: 105250 Number of sequences better than 10.0: 81 Number of HSP's better than 10.0 without gapping: 85 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103048 Number of HSP's gapped (non-prelim): 2193 length of query: 591 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 568 effective length of database: 17,143,297,704 effective search space: 9737393095872 effective search space used: 9737393095872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
