ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baalj24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KPCD2_HUMAN (Q9BZL6) Serine/threonine-protein kinase D2 (EC 2.7.... 31 1.3
2Y48K_ELV (P35929) Hypothetical 48 kDa protein 30 3.7
3YEK9_SCHPO (O36021) Hypothetical protein C4F10.09c in chromosome I 29 6.3

>KPCD2_HUMAN (Q9BZL6) Serine/threonine-protein kinase D2 (EC 2.7.11.13)|
           (nPKC-D2)
          Length = 878

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 102 KMPGTTPGAPSGRSIDCAGKWQFSLQ 179
           +MPG TPG PSG+  + A  W+ +++
Sbjct: 480 EMPGGTPGGPSGQGAEAARGWETAIR 505



to top

>Y48K_ELV (P35929) Hypothetical 48 kDa protein|
          Length = 440

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 6   PICCSIXLCPMVPTHAKEEIASSTLMSPEADSKMPGTTPG-APSGRSIDC 152
           P+ C    CP   +H    + ++   SP    + PGT P   P G+ + C
Sbjct: 41  PLHCPKGTCPPAQSHGHSSLRTNLNSSPPRCPQNPGTEPSLQPLGKVLQC 90



to top

>YEK9_SCHPO (O36021) Hypothetical protein C4F10.09c in chromosome I|
          Length = 860

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = -1

Query: 352 TCI*EPRKYRSRYHSDVTLVSSYVLYGERRTIQAKIKMQIQNHILLPF 209
           +C+ E   + + +H  V+L++  ++YGE+   +  + +   NH L  F
Sbjct: 588 SCLWEIHPFLNHFHPTVSLLAKSLVYGEKILGKPNLSLHTLNHFLDKF 635


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,800,772
Number of Sequences: 219361
Number of extensions: 1326292
Number of successful extensions: 3266
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3264
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top