ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baalj23 |
|---|---|
| Clone Library Name | barley_pub |
>CRYL1_PONPY (Q5RDZ2) Lambda-crystallin homolog| Length = 318 Score = 32.7 bits (73), Expect = 0.87 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = +1 Query: 217 TPPTISGDCCSRTPDTPDHLCQCRRWTPKSIFAVAVISPRV 339 T ++ D C + PD P+HL R+W + + +A + +V Sbjct: 275 TAEKVNQDMCMKVPDDPEHLAARRQWRDECLMRLAKLKSQV 315
>CRYL1_HUMAN (Q9Y2S2) Lambda-crystallin homolog| Length = 318 Score = 32.7 bits (73), Expect = 0.87 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = +1 Query: 217 TPPTISGDCCSRTPDTPDHLCQCRRWTPKSIFAVAVISPRV 339 T ++ D C + PD P+HL R+W + + +A + +V Sbjct: 275 TAEKVNQDMCMKVPDDPEHLAARRQWRDECLMRLAKLKSQV 315
>SYNE1_HUMAN (Q8NF91) Nesprin-1 (Nuclear envelope spectrin repeat protein 1)| (Synaptic nuclear envelope protein 1) (Syne-1) (Myocyte nuclear envelope protein 1) (Myne-1) (Enaptin) Length = 8797 Score = 32.7 bits (73), Expect = 0.87 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = -2 Query: 346 DDILEAK*RQQQRYSWASNGDTDTGGRGCPASGCSSHQRWSGAFGSCS 203 + +L+ QQ SW+S + DT G P SG S+ R G CS Sbjct: 8657 EKLLDVSSSQQDLSSWSSADELDTSGSVSPTSGRSTPNRQKTPRGKCS 8704
>CRYL1_MOUSE (Q99KP3) Lambda-crystallin homolog| Length = 318 Score = 32.0 bits (71), Expect = 1.5 Identities = 11/37 (29%), Positives = 20/37 (54%) Frame = +1 Query: 217 TPPTISGDCCSRTPDTPDHLCQCRRWTPKSIFAVAVI 327 T +S D C + PD P+HL R+W + ++++ Sbjct: 275 TVERVSEDMCMKVPDDPEHLAARRQWRDDCLMKLSIL 311
>RFAK_ECOLI (P27242) Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC| 2.4.1.56) Length = 357 Score = 31.6 bits (70), Expect = 1.9 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = +1 Query: 139 IFVAALDHLRRHPLPVD-ALDHRCSCRTPPTISGDCCSRTPDTPDHLCQCRRWTPKSIFA 315 I+ AL + VD AL H + PT++ SRTP+ P HL W+P + Sbjct: 271 IYTVALTKYSDFVISVDTALVHIAAAYHKPTLAFYPNSRTPEYPSHLI----WSPNHHKS 326 Query: 316 VAVISP 333 + ++SP Sbjct: 327 IQIVSP 332
>RX1_BRARE (O42356) Retinal homeobox protein Rx1| Length = 330 Score = 31.2 bits (69), Expect = 2.5 Identities = 16/43 (37%), Positives = 27/43 (62%) Frame = +2 Query: 374 VAVLSNLLDVRISCWFPSRSRSPARFQDRVESHVMLLRDSKTL 502 +A+ NL +VR+ WF +R R+ R Q+++++ M L DS L Sbjct: 170 LAMKVNLPEVRVQVWFQNR-RAKWRRQEKIDASTMKLHDSPML 211
>RX2_CHICK (Q9PVX0) Retinal homeobox protein Rx2 (cRax2)| Length = 317 Score = 30.0 bits (66), Expect = 5.7 Identities = 17/43 (39%), Positives = 27/43 (62%) Frame = +2 Query: 374 VAVLSNLLDVRISCWFPSRSRSPARFQDRVESHVMLLRDSKTL 502 +A+ NL +VR+ WF +R R+ R Q+++E M L+DS L Sbjct: 155 LAMKVNLPEVRVQVWFQNR-RAKWRRQEKLEVSSMKLQDSPIL 196
>RX2_ORYLA (Q9I9A2) Retinal homeobox protein Rx2| Length = 327 Score = 30.0 bits (66), Expect = 5.7 Identities = 16/43 (37%), Positives = 26/43 (60%) Frame = +2 Query: 374 VAVLSNLLDVRISCWFPSRSRSPARFQDRVESHVMLLRDSKTL 502 +A NL +VR+ WF +R R+ R Q+++++ M L DS L Sbjct: 170 LATKVNLPEVRVQVWFQNR-RAKWRRQEKMDTSTMKLHDSPML 211
>RXA_XENLA (O42201) Retinal homeobox protein Rx-A (xRx1)| Length = 322 Score = 29.6 bits (65), Expect = 7.4 Identities = 17/43 (39%), Positives = 27/43 (62%) Frame = +2 Query: 374 VAVLSNLLDVRISCWFPSRSRSPARFQDRVESHVMLLRDSKTL 502 +A+ NL +VR+ WF +R R+ R Q+++E M L+DS L Sbjct: 163 LAMKVNLPEVRVQVWFQNR-RAKWRRQEKLEVTSMKLQDSPML 204
>RXB_XENLA (O42567) Retinal homeobox protein Rx-B (Rx2A)| Length = 325 Score = 29.6 bits (65), Expect = 7.4 Identities = 17/43 (39%), Positives = 27/43 (62%) Frame = +2 Query: 374 VAVLSNLLDVRISCWFPSRSRSPARFQDRVESHVMLLRDSKTL 502 +A+ NL +VR+ WF +R R+ R Q+++E M L+DS L Sbjct: 163 LAMKVNLPEVRVQVWFQNR-RAKWRRQEKLEVTSMKLQDSPML 204
>RX1_CHICK (Q9PVY0) Retinal homeobox protein Rx1 (cRax1)| Length = 228 Score = 29.6 bits (65), Expect = 7.4 Identities = 16/43 (37%), Positives = 27/43 (62%) Frame = +2 Query: 374 VAVLSNLLDVRISCWFPSRSRSPARFQDRVESHVMLLRDSKTL 502 +A+ NL +VR+ WF +R R+ R Q+++E+ M L D+ L Sbjct: 69 LAMKVNLPEVRVQVWFQNR-RAKWRRQEKMEASSMKLHDTPML 110
>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase (EC| 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3262 Score = 29.3 bits (64), Expect = 9.7 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Frame = -1 Query: 455 LGIAQVNGILKETSKKF---LRPTSWRERQPGWRARQRPG*HTRGEMTATAKILLGVQRR 285 L +A G+++ S LR T +R P W +R G + G +A A +L V+RR Sbjct: 2400 LRVAGEPGLVRRLSLSLSQKLRRTPPGQRHPAWESRSGDGESSEGGSSARASPVLAVRRR 2459
>RX2_BRARE (O42357) Retinal homeobox protein Rx2| Length = 327 Score = 29.3 bits (64), Expect = 9.7 Identities = 15/40 (37%), Positives = 26/40 (65%) Frame = +2 Query: 374 VAVLSNLLDVRISCWFPSRSRSPARFQDRVESHVMLLRDS 493 +A+ NL +VR+ WF +R R+ R Q+++++ M L DS Sbjct: 168 LAMKVNLPEVRVQVWFQNR-RAKWRRQEKMDTGTMKLHDS 206
>DL_DROME (P10041) Neurogenic locus protein delta precursor| Length = 833 Score = 29.3 bits (64), Expect = 9.7 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 3/65 (4%) Frame = +1 Query: 199 HRCSCRTPPTISGDCCSRTPDTPD-HLCQCRR-WTPKSIFA-VAVISPRVCHPGRCRARH 369 + C P +G C P T + C C W+ K V S + CH G CR Sbjct: 333 YSCDADVNPCQNGGTCIDEPHTKTGYKCHCANGWSGKMCEEKVLTCSDKPCHQGICRNVR 392 Query: 370 PGCRS 384 PG S Sbjct: 393 PGLGS 397
>RX_RAT (Q9JLT7) Retinal homeobox protein Rx (Retina and anterior neural| fold homeobox protein) Length = 342 Score = 29.3 bits (64), Expect = 9.7 Identities = 16/38 (42%), Positives = 24/38 (63%) Frame = +2 Query: 389 NLLDVRISCWFPSRSRSPARFQDRVESHVMLLRDSKTL 502 NL +VR+ WF +R R+ R Q+++E M L+DS L Sbjct: 175 NLPEVRVQVWFQNR-RAKWRRQEKLEVSSMKLQDSPLL 211
>RX_MOUSE (O35602) Retinal homeobox protein Rx (Retina and anterior neural| fold homeobox protein) Length = 342 Score = 29.3 bits (64), Expect = 9.7 Identities = 16/38 (42%), Positives = 24/38 (63%) Frame = +2 Query: 389 NLLDVRISCWFPSRSRSPARFQDRVESHVMLLRDSKTL 502 NL +VR+ WF +R R+ R Q+++E M L+DS L Sbjct: 174 NLPEVRVQVWFQNR-RAKWRRQEKLEVSSMKLQDSPLL 210
>RX_HUMAN (Q9Y2V3) Retinal homeobox protein Rx (Retina and anterior neural| fold homeobox protein) Length = 346 Score = 29.3 bits (64), Expect = 9.7 Identities = 16/38 (42%), Positives = 24/38 (63%) Frame = +2 Query: 389 NLLDVRISCWFPSRSRSPARFQDRVESHVMLLRDSKTL 502 NL +VR+ WF +R R+ R Q+++E M L+DS L Sbjct: 174 NLPEVRVQVWFQNR-RAKWRRQEKLEVSSMKLQDSPLL 210 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,279,846 Number of Sequences: 219361 Number of extensions: 1738891 Number of successful extensions: 4572 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4356 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4571 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
