ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baalj19 |
|---|---|
| Clone Library Name | barley_pub |
>PB1_HUMAN (Q86U86) Protein polybromo-1 (hPB1) (Polybromo-1D) (BRG1-associated| factor 180) (BAF180) Length = 1689 Score = 42.0 bits (97), Expect = 0.002 Identities = 27/92 (29%), Positives = 46/92 (50%) Frame = +1 Query: 40 DCVYLFKNGEPEPYIGKIVKIWQQNEAKKVKILWFFTPDEIRNYLEGPVVENEIFLASGD 219 DCV++ +G P +G+I K+W ++ A F P+E + + E+FL++ Sbjct: 1162 DCVFIKSHGLVRPRVGRIEKVWVRDGAAYFYGPIFIHPEETEHEPTKMFYKKEVFLSN-- 1219 Query: 220 GTGLADINPLESIAGKCTVVCISKDERNRQPT 315 L + P+ I GKC V+ KD + +PT Sbjct: 1220 ---LEETCPMTCILGKCAVLSF-KDFLSCRPT 1247 Score = 35.8 bits (81), Expect = 0.11 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 2/96 (2%) Frame = +1 Query: 10 TFXNVKYSLYDCVYLFK-NGEPEPYIGKIVKIWQQNEAKK-VKILWFFTPDEIRNYLEGP 183 +F N Y + D VY+ +P+I I ++W+ + +K + WF+ P+E + Sbjct: 952 SFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRK 1011 Query: 184 VVENEIFLASGDGTGLADINPLESIAGKCTVVCISK 291 +E E+F + + P+ I GKC V+ + + Sbjct: 1012 FLEKEVFKSD-----YYNKVPVSKILGKCVVMFVKE 1042
>PB1_CHICK (Q90941) Protein polybromo-1| Length = 1633 Score = 41.6 bits (96), Expect = 0.002 Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 28/211 (13%) Frame = +1 Query: 40 DCVYLFKNGEPEPYIGKIVKIWQQNEAKKVKILWFFTPDEIRNYLEGPVVENEIFLASGD 219 DCV++ +G P +G+I K+W ++ A F P+E + + E+FL++ Sbjct: 1161 DCVFIKSHGLVRPRVGRIEKMWVRDGAAYFFGPIFIHPEETEHEPTKMFYKKEVFLSN-- 1218 Query: 220 GTGLADINPLESIAGKCTVVCISKDERNRQPT----------PKEQTVADYIFYRFFDVG 369 L + P+ I GKC V+ KD +PT +D +F + Sbjct: 1219 ---LEETCPMSCILGKCAVLSF-KDFLCCRPTEISENDVFLCESRYNESDKQMKKFKGLK 1274 Query: 370 NCTLSEQVPEK---------IVGLEVNVLLNPEAEQV------ICYPDQDVQGMNQKVGA 504 +LS +V + + E + LL + +Q+ + D+D++ M ++ G Sbjct: 1275 RFSLSAKVVDDEIYYFRKPIVPQKEPSPLLEKKIQQLEAKFAELGGGDEDMEEMGEEEGD 1334 Query: 505 GLVAP-LPQSAAKMEDEIPVAPFL--QSTAK 588 P +PQ + E+ + P+ QST K Sbjct: 1335 ITETPSMPQLQTPLTSELDIMPYTPPQSTPK 1365 Score = 35.8 bits (81), Expect = 0.11 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 2/96 (2%) Frame = +1 Query: 10 TFXNVKYSLYDCVYLFK-NGEPEPYIGKIVKIWQQNEAKK-VKILWFFTPDEIRNYLEGP 183 +F N Y + D VY+ +P+I I ++W+ + +K + WF+ P+E + Sbjct: 950 SFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRK 1009 Query: 184 VVENEIFLASGDGTGLADINPLESIAGKCTVVCISK 291 +E E+F + + P+ I GKC V+ + + Sbjct: 1010 FLEKEVFKSD-----YYNKVPVSKILGKCVVMFVKE 1040
>RSC1_SCHPO (O74964) Chromatin structure remodeling complex protein rsc1| (Remodel the structure of chromatin complex subunit 1) Length = 803 Score = 40.0 bits (92), Expect = 0.006 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Frame = +1 Query: 73 EPYIGKIVKIWQQNE-AKKVKILWFFTPDEIRNYLEGPVVENEIFLASGDGTGLADINPL 249 +P + +I +IW+ ++ V + W+ P++ + + ENE+F T L +P+ Sbjct: 369 KPIVSQIYRIWKSDDDINYVTVCWYLRPEQTVHRADAVFYENEVF-----KTSLYRDHPV 423 Query: 250 ESIAGKCTVVCISKDERNR 306 I G+C V+ I++ R R Sbjct: 424 SEIVGRCFVMYITRYIRGR 442
>NENF_MOUSE (Q9CQ45) Neudesin precursor (Neuron-derived neurotrophic factor)| (Secreted protein of unknown function) (SPUF protein) Length = 171 Score = 33.5 bits (75), Expect = 0.54 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%) Frame = +2 Query: 179 APWWRMRYFLLLVMALAL-PISTHW 250 APWWR+R LV+ALAL P+ + W Sbjct: 5 APWWRLRLLAALVLALALVPVPSAW 29
>SURE_SALPA (Q5PEG4) Multifunctional protein surE [Includes: 5'/3'-nucleotidase| (EC 3.1.3.5) (EC 3.1.3.6) (Nucleoside monophosphate phosphohydrolase); Exopolyphosphatase (EC 3.6.1.11)] Length = 253 Score = 33.1 bits (74), Expect = 0.70 Identities = 27/97 (27%), Positives = 37/97 (38%) Frame = +1 Query: 199 IFLASGDGTGLADINPLESIAGKCTVVCISKDERNRQPTPKEQTVADYIFYRFFDVGNCT 378 I L++ DG I L K V + +RNR T+ + FD G+ Sbjct: 3 ILLSNDDGVHAPGIQTLAKALRKFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIA 62 Query: 379 LSEQVPEKIVGLEVNVLLNPEAEQVICYPDQDVQGMN 489 + P V L VN L+ P PD V G+N Sbjct: 63 VQMGTPTDCVYLGVNALMRPR-------PDIVVSGIN 92
>DAPK2_HUMAN (Q9UIK4) Death-associated protein kinase 2 (EC 2.7.11.1) (DAP| kinase 2) (DAP-kinase-related protein 1) (DRP-1) Length = 370 Score = 32.0 bits (71), Expect = 1.6 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%) Frame = +2 Query: 368 ETAHFLSKYLRKL*GWKSTCCLILK--LSKLYVTRIRMCKA*IRRWVQVWLHPFRNQ--R 535 +T+ ++RKL ++ L ++ L ++T + +A +RR V L FR Q R Sbjct: 253 QTSELAKDFIRKLLVKETRKRLTIQEALRHPWITPVDNQQAMVRRESVVNLENFRKQYVR 312 Query: 536 LRWRMKFLLHPFCNQLLRWRMK 601 RW++ F + CN L R MK Sbjct: 313 RRWKLSFSIVSLCNHLTRSLMK 334
>TRI10_MOUSE (Q9WUH5) Tripartite motif protein 10 (RING finger protein 9)| (Hematopoietic RING finger 1) Length = 489 Score = 32.0 bits (71), Expect = 1.6 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = -1 Query: 155 SGVKNQRIFTFLASFCCHIFTIFPMYGSGSPF 60 + V + I+TF ASF IF +F ++G GS F Sbjct: 446 NAVTQEHIYTFTASFTQKIFPLFGLWGRGSSF 477
>SURE_SALTY (P66881) Multifunctional protein surE [Includes: 5'/3'-nucleotidase| (EC 3.1.3.5) (EC 3.1.3.6) (Nucleoside monophosphate phosphohydrolase); Exopolyphosphatase (EC 3.6.1.11)] Length = 253 Score = 31.6 bits (70), Expect = 2.0 Identities = 26/97 (26%), Positives = 37/97 (38%) Frame = +1 Query: 199 IFLASGDGTGLADINPLESIAGKCTVVCISKDERNRQPTPKEQTVADYIFYRFFDVGNCT 378 I L++ DG I L + V + +RNR T+ + FD G+ Sbjct: 3 ILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIA 62 Query: 379 LSEQVPEKIVGLEVNVLLNPEAEQVICYPDQDVQGMN 489 + P V L VN L+ P PD V G+N Sbjct: 63 VQMGTPTDCVYLGVNALMRPR-------PDIVVSGIN 92
>SURE_SALTI (P66882) Multifunctional protein surE [Includes: 5'/3'-nucleotidase| (EC 3.1.3.5) (EC 3.1.3.6) (Nucleoside monophosphate phosphohydrolase); Exopolyphosphatase (EC 3.6.1.11)] Length = 253 Score = 31.6 bits (70), Expect = 2.0 Identities = 26/97 (26%), Positives = 37/97 (38%) Frame = +1 Query: 199 IFLASGDGTGLADINPLESIAGKCTVVCISKDERNRQPTPKEQTVADYIFYRFFDVGNCT 378 I L++ DG I L + V + +RNR T+ + FD G+ Sbjct: 3 ILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIA 62 Query: 379 LSEQVPEKIVGLEVNVLLNPEAEQVICYPDQDVQGMN 489 + P V L VN L+ P PD V G+N Sbjct: 63 VQMGTPTDCVYLGVNALMRPR-------PDIVVSGIN 92
>SURE_SALCH (Q57KJ7) Multifunctional protein surE [Includes: 5'/3'-nucleotidase| (EC 3.1.3.5) (EC 3.1.3.6) (Nucleoside monophosphate phosphohydrolase); Exopolyphosphatase (EC 3.6.1.11)] Length = 253 Score = 31.6 bits (70), Expect = 2.0 Identities = 26/97 (26%), Positives = 37/97 (38%) Frame = +1 Query: 199 IFLASGDGTGLADINPLESIAGKCTVVCISKDERNRQPTPKEQTVADYIFYRFFDVGNCT 378 I L++ DG I L + V + +RNR T+ + FD G+ Sbjct: 3 ILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIA 62 Query: 379 LSEQVPEKIVGLEVNVLLNPEAEQVICYPDQDVQGMN 489 + P V L VN L+ P PD V G+N Sbjct: 63 VQMGTPTDCVYLGVNALMRPR-------PDIVVSGIN 92
>DAPK2_MOUSE (Q8VDF3) Death-associated protein kinase 2 (EC 2.7.11.1) (DAP| kinase 2) (DAP-kinase-related protein 1) (DRP-1) Length = 370 Score = 31.2 bits (69), Expect = 2.7 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 4/82 (4%) Frame = +2 Query: 368 ETAHFLSKYLRKL*GWKSTCCLILK--LSKLYVTRIRMCKA*IRRWVQVWLHPFRNQ--R 535 +T+ ++RKL ++ L ++ L ++T + +A +RR V L F+ Q R Sbjct: 253 QTSELAKDFIRKLLVKETRKRLTIQEALRHPWITPVDTQQAMVRRESVVNLENFKKQYVR 312 Query: 536 LRWRMKFLLHPFCNQLLRWRMK 601 RW++ F + CN L R MK Sbjct: 313 RRWKLSFSIVSLCNHLTRSLMK 334
>ARGJ_BACLD (Q65LE9) Arginine biosynthesis bifunctional protein argJ [Includes:| Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate syn Length = 406 Score = 30.8 bits (68), Expect = 3.5 Identities = 18/61 (29%), Positives = 26/61 (42%) Frame = +1 Query: 52 LFKNGEPEPYIGKIVKIWQQNEAKKVKILWFFTPDEIRNYLEGPVVENEIFLASGDGTGL 231 LFKN EP+P+ ++ K YLE V+ E+F+ G+G G Sbjct: 350 LFKNNEPQPFSEELAK----------------------TYLENSEVKIEVFMQEGEGKGT 387 Query: 232 A 234 A Sbjct: 388 A 388
>MDM2_XENLA (P56273) Ubiquitin-protein ligase E3 Mdm2 (EC 6.3.2.-) (p53-binding| protein Mdm2) (Double minute 2 protein) (Xdm2) Length = 473 Score = 30.8 bits (68), Expect = 3.5 Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Frame = +1 Query: 244 PLESIAGKCTVVCIS--KDERNRQPTPKEQTVADYIFYRFFDVGNCTLSEQVPEKIVGLE 417 PL S +C V ++R ++P P ++ + + FDV +C S+ + ++ Sbjct: 305 PLPSYCPRCWTVRKDWLPEQRRKEPPPSKRKLLEIEEDEGFDVPDCKKSKLTSSQDTNVD 364 Query: 418 VNVLLNPEAEQVICYPDQDVQGMNQKVGAGLVAPLPQSAAKMEDEIPVAPFLQSTAKMED 597 EAE + Q+ + +Q +G +A Q K + S ME Sbjct: 365 -----KKEAENIQNSESQETEDCSQPSTSGSIASCSQEVTKED---------SSKESMES 410 Query: 598 EIPVAAV 618 +P+ ++ Sbjct: 411 SLPLTSI 417
>ARGJ_BACSU (P36843) Arginine biosynthesis bifunctional protein argJ [Includes:| Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate syn Length = 406 Score = 30.0 bits (66), Expect = 6.0 Identities = 20/61 (32%), Positives = 24/61 (39%) Frame = +1 Query: 52 LFKNGEPEPYIGKIVKIWQQNEAKKVKILWFFTPDEIRNYLEGPVVENEIFLASGDGTGL 231 LFKN EP+P+ I K YLEG + I +A GDG G Sbjct: 350 LFKNNEPQPFSESIAK----------------------EYLEGDEITIVIKMAEGDGNGR 387 Query: 232 A 234 A Sbjct: 388 A 388
>ARGJ_BACAM (Q9ZJ14) Arginine biosynthesis bifunctional protein argJ [Includes:| Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate syn Length = 406 Score = 30.0 bits (66), Expect = 6.0 Identities = 20/61 (32%), Positives = 24/61 (39%) Frame = +1 Query: 52 LFKNGEPEPYIGKIVKIWQQNEAKKVKILWFFTPDEIRNYLEGPVVENEIFLASGDGTGL 231 LFKN EP+P+ I K YLEG + I +A GDG G Sbjct: 350 LFKNNEPQPFSESIAK----------------------EYLEGDEITIVIKMAEGDGNGR 387 Query: 232 A 234 A Sbjct: 388 A 388
>SURE_SHISS (Q3YYB8) Multifunctional protein surE [Includes: 5'/3'-nucleotidase| (EC 3.1.3.5) (EC 3.1.3.6) (Nucleoside monophosphate phosphohydrolase); Exopolyphosphatase (EC 3.6.1.11)] Length = 253 Score = 30.0 bits (66), Expect = 6.0 Identities = 25/97 (25%), Positives = 37/97 (38%) Frame = +1 Query: 199 IFLASGDGTGLADINPLESIAGKCTVVCISKDERNRQPTPKEQTVADYIFYRFFDVGNCT 378 I L++ DG I L + V + +RNR T+ + F+ G+ Sbjct: 3 ILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIA 62 Query: 379 LSEQVPEKIVGLEVNVLLNPEAEQVICYPDQDVQGMN 489 + P V L VN L+ P PD V G+N Sbjct: 63 VQMGTPTDCVYLGVNALMRPR-------PDIVVSGIN 92
>SURE_SHIDS (Q32CI6) Multifunctional protein surE [Includes: 5'/3'-nucleotidase| (EC 3.1.3.5) (EC 3.1.3.6) (Nucleoside monophosphate phosphohydrolase); Exopolyphosphatase (EC 3.6.1.11)] Length = 253 Score = 30.0 bits (66), Expect = 6.0 Identities = 25/97 (25%), Positives = 37/97 (38%) Frame = +1 Query: 199 IFLASGDGTGLADINPLESIAGKCTVVCISKDERNRQPTPKEQTVADYIFYRFFDVGNCT 378 I L++ DG I L + V + +RNR T+ + F+ G+ Sbjct: 3 ILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIA 62 Query: 379 LSEQVPEKIVGLEVNVLLNPEAEQVICYPDQDVQGMN 489 + P V L VN L+ P PD V G+N Sbjct: 63 VQMGTPTDCVYLGVNALMRPR-------PDIVVSGIN 92
>SURE_SHIBS (Q31XA6) Multifunctional protein surE [Includes: 5'/3'-nucleotidase| (EC 3.1.3.5) (EC 3.1.3.6) (Nucleoside monophosphate phosphohydrolase); Exopolyphosphatase (EC 3.6.1.11)] Length = 253 Score = 30.0 bits (66), Expect = 6.0 Identities = 25/97 (25%), Positives = 37/97 (38%) Frame = +1 Query: 199 IFLASGDGTGLADINPLESIAGKCTVVCISKDERNRQPTPKEQTVADYIFYRFFDVGNCT 378 I L++ DG I L + V + +RNR T+ + F+ G+ Sbjct: 3 ILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIA 62 Query: 379 LSEQVPEKIVGLEVNVLLNPEAEQVICYPDQDVQGMN 489 + P V L VN L+ P PD V G+N Sbjct: 63 VQMGTPTDCVYLGVNALMRPR-------PDIVVSGIN 92
>SURE_ECOLI (P0A840) Multifunctional protein surE (Stationary-phase survival| protein surE) [Includes: 5'/3'-nucleotidase (EC 3.1.3.5) (EC 3.1.3.6) (Nucleoside monophosphate phosphohydrolase); Exopolyphosphatase (EC 3.6.1.11)] Length = 253 Score = 30.0 bits (66), Expect = 6.0 Identities = 25/97 (25%), Positives = 37/97 (38%) Frame = +1 Query: 199 IFLASGDGTGLADINPLESIAGKCTVVCISKDERNRQPTPKEQTVADYIFYRFFDVGNCT 378 I L++ DG I L + V + +RNR T+ + F+ G+ Sbjct: 3 ILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIA 62 Query: 379 LSEQVPEKIVGLEVNVLLNPEAEQVICYPDQDVQGMN 489 + P V L VN L+ P PD V G+N Sbjct: 63 VQMGTPTDCVYLGVNALMRPR-------PDIVVSGIN 92
>SURE_ECOL6 (P0A841) Multifunctional protein surE [Includes: 5'/3'-nucleotidase| (EC 3.1.3.5) (EC 3.1.3.6) (Nucleoside monophosphate phosphohydrolase); Exopolyphosphatase (EC 3.6.1.11)] Length = 253 Score = 30.0 bits (66), Expect = 6.0 Identities = 25/97 (25%), Positives = 37/97 (38%) Frame = +1 Query: 199 IFLASGDGTGLADINPLESIAGKCTVVCISKDERNRQPTPKEQTVADYIFYRFFDVGNCT 378 I L++ DG I L + V + +RNR T+ + F+ G+ Sbjct: 3 ILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIA 62 Query: 379 LSEQVPEKIVGLEVNVLLNPEAEQVICYPDQDVQGMN 489 + P V L VN L+ P PD V G+N Sbjct: 63 VQMGTPTDCVYLGVNALMRPR-------PDIVVSGIN 92
>SURE_ECO57 (P0A842) Multifunctional protein surE [Includes: 5'/3'-nucleotidase| (EC 3.1.3.5) (EC 3.1.3.6) (Nucleoside monophosphate phosphohydrolase); Exopolyphosphatase (EC 3.6.1.11)] Length = 253 Score = 30.0 bits (66), Expect = 6.0 Identities = 25/97 (25%), Positives = 37/97 (38%) Frame = +1 Query: 199 IFLASGDGTGLADINPLESIAGKCTVVCISKDERNRQPTPKEQTVADYIFYRFFDVGNCT 378 I L++ DG I L + V + +RNR T+ + F+ G+ Sbjct: 3 ILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIA 62 Query: 379 LSEQVPEKIVGLEVNVLLNPEAEQVICYPDQDVQGMN 489 + P V L VN L+ P PD V G+N Sbjct: 63 VQMGTPTDCVYLGVNALMRPR-------PDIVVSGIN 92
>TRI10_PIG (O19085) Tripartite motif protein 10 (RING finger protein 9)| (B30-RING finger protein) Length = 482 Score = 30.0 bits (66), Expect = 6.0 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -1 Query: 155 SGVKNQRIFTFLASFCCHIFTIFPMYGSGSPF 60 + V + I+TF ASF +F F ++G GS F Sbjct: 447 NAVTQEPIYTFTASFTQKVFPFFGLWGRGSKF 478 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.137 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,191,889 Number of Sequences: 219361 Number of extensions: 2130270 Number of successful extensions: 6200 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 5952 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6195 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
