Clone Name | baalj16 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_468533.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2511 Score = 428 bits (216), Expect = e-116 Identities = 526/628 (83%), Gaps = 2/628 (0%) Strand = Plus / Plus Query: 22 ccgctcgngcgcatcgtcgacaggctcgncgtcgtctggnaacgtcgtcgaccacctcaa 81 ||||||| ||| ||||||||||| |||| ||||||||| | ||||||||||||||| Sbjct: 404 ccgctcgagcggatcgtcgacagcctcgaggtcgtctgggg-caccgtcgaccacctcaa 462 Query: 82 ggccgtcaaggactcgcccgacctccgctccgccgtcgaggacgtccagcccgagnaaag 141 ||||||||||||||| ||||||||||| |||||||||||||||| ||||| || |||| Sbjct: 463 ggccgtcaaggactcttccgacctccgcgccgccgtcgaggacgttcagcctga-caaag 521 Query: 142 tgaaattctacctgagactggggcagagcaagcctatctacgaggccttcaacgccatca 201 | |||||| | || || ||||| |||||||||||||| ||| | || ||||||||||| | Sbjct: 522 tcaaattccaactaaggctgggccagagcaagcctatataccaagctttcaacgccataa 581 Query: 202 ggaattcttcagactgggacagcctcagcgacgcccgcaagcgtgtcgtcgaaggccaaa 261 ||||||||||||||||||| | |||||| || || ||||||||| | || |||| ||||| Sbjct: 582 ggaattcttcagactgggaaaccctcagtgaggctcgcaagcgtatagtagaagcccaaa 641 Query: 262 taaaggatgctgttcttggtggagttgcgcttgaggatgagcagagagagatatttaatc 321 | ||||| || ||||| ||||||| || ||||||||||| ||||| |||| |||||||| Sbjct: 642 tcaaggaagccgttctaagtggagtcgcacttgaggatgaacagagggagaaatttaatc 701 Query: 322 aaatccaacaggaacttgaaaaactgtcagagaaattcagtgaaaatgtgttggatgcaa 381 ||||| | ||||| ||||| || | || | || ||||||||||||||| ||||||||| Sbjct: 702 aaatcgagcaggagcttgagaagttaacacaaaagttcagtgaaaatgtgctggatgcaa 761 Query: 382 caaagaaatttgagaaattggttactgacaagaaagaaattgatggtttacctgcctcag 441 | ||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||| ||| Sbjct: 762 ctaagaaatttgagaaattaattactgataagaatgaaattgatgggttacctgccacag 821 Query: 442 ctcttggcttggcagcacagactgctgtttcaaagggacatgaaaatgcttcagctgaaa 501 | |||||||| |||||||||||||| | |||||||| |||||||||||||| ||||||| Sbjct: 822 cacttggcttagcagcacagactgccgcgtcaaagggtcatgaaaatgcttcggctgaaa 881 Query: 502 atggaccttggatgatcacactagacgcaccaagcttcacggctgtcatgcaacatgcta 561 | ||||| ||||| |||||| | || || ||||||| | ||||| ||||| ||||| Sbjct: 882 acggaccatggatcatcacattggatgcgccaagctatattgctgttatgcagcatgcac 941 Query: 562 agaacagggctctccgtgaagaagtatatcgtgcttatctaacccgtgcatcaagcggtg 621 |||||| || || ||||||||||| ||||||||||| ||||||||||| || || || | Sbjct: 942 ggaacagagcacttcgtgaagaagtttatcgtgcttacctaacccgtgcctctagtggcg 1001 Query: 622 atcttgataacactgatatcataagtca 649 | ||||||||||| ||||||| ||||| Sbjct: 1002 accttgataacaccaatatcatcagtca 1029
>dbj|AK070094.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040J23, full insert sequence Length = 2478 Score = 428 bits (216), Expect = e-116 Identities = 526/628 (83%), Gaps = 2/628 (0%) Strand = Plus / Plus Query: 22 ccgctcgngcgcatcgtcgacaggctcgncgtcgtctggnaacgtcgtcgaccacctcaa 81 ||||||| ||| ||||||||||| |||| ||||||||| | ||||||||||||||| Sbjct: 371 ccgctcgagcggatcgtcgacagcctcgaggtcgtctgggg-caccgtcgaccacctcaa 429 Query: 82 ggccgtcaaggactcgcccgacctccgctccgccgtcgaggacgtccagcccgagnaaag 141 ||||||||||||||| ||||||||||| |||||||||||||||| ||||| || |||| Sbjct: 430 ggccgtcaaggactcttccgacctccgcgccgccgtcgaggacgttcagcctga-caaag 488 Query: 142 tgaaattctacctgagactggggcagagcaagcctatctacgaggccttcaacgccatca 201 | |||||| | || || ||||| |||||||||||||| ||| | || ||||||||||| | Sbjct: 489 tcaaattccaactaaggctgggccagagcaagcctatataccaagctttcaacgccataa 548 Query: 202 ggaattcttcagactgggacagcctcagcgacgcccgcaagcgtgtcgtcgaaggccaaa 261 ||||||||||||||||||| | |||||| || || ||||||||| | || |||| ||||| Sbjct: 549 ggaattcttcagactgggaaaccctcagtgaggctcgcaagcgtatagtagaagcccaaa 608 Query: 262 taaaggatgctgttcttggtggagttgcgcttgaggatgagcagagagagatatttaatc 321 | ||||| || ||||| ||||||| || ||||||||||| ||||| |||| |||||||| Sbjct: 609 tcaaggaagccgttctaagtggagtcgcacttgaggatgaacagagggagaaatttaatc 668 Query: 322 aaatccaacaggaacttgaaaaactgtcagagaaattcagtgaaaatgtgttggatgcaa 381 ||||| | ||||| ||||| || | || | || ||||||||||||||| ||||||||| Sbjct: 669 aaatcgagcaggagcttgagaagttaacacaaaagttcagtgaaaatgtgctggatgcaa 728 Query: 382 caaagaaatttgagaaattggttactgacaagaaagaaattgatggtttacctgcctcag 441 | ||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||| ||| Sbjct: 729 ctaagaaatttgagaaattaattactgataagaatgaaattgatgggttacctgccacag 788 Query: 442 ctcttggcttggcagcacagactgctgtttcaaagggacatgaaaatgcttcagctgaaa 501 | |||||||| |||||||||||||| | |||||||| |||||||||||||| ||||||| Sbjct: 789 cacttggcttagcagcacagactgccgcgtcaaagggtcatgaaaatgcttcggctgaaa 848 Query: 502 atggaccttggatgatcacactagacgcaccaagcttcacggctgtcatgcaacatgcta 561 | ||||| ||||| |||||| | || || ||||||| | ||||| ||||| ||||| Sbjct: 849 acggaccatggatcatcacattggatgcgccaagctatattgctgttatgcagcatgcac 908 Query: 562 agaacagggctctccgtgaagaagtatatcgtgcttatctaacccgtgcatcaagcggtg 621 |||||| || || ||||||||||| ||||||||||| ||||||||||| || || || | Sbjct: 909 ggaacagagcacttcgtgaagaagtttatcgtgcttacctaacccgtgcctctagtggcg 968 Query: 622 atcttgataacactgatatcataagtca 649 | ||||||||||| ||||||| ||||| Sbjct: 969 accttgataacaccaatatcatcagtca 996
>dbj|AK065077.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001K16, full insert sequence Length = 2511 Score = 428 bits (216), Expect = e-116 Identities = 526/628 (83%), Gaps = 2/628 (0%) Strand = Plus / Plus Query: 22 ccgctcgngcgcatcgtcgacaggctcgncgtcgtctggnaacgtcgtcgaccacctcaa 81 ||||||| ||| ||||||||||| |||| ||||||||| | ||||||||||||||| Sbjct: 404 ccgctcgagcggatcgtcgacagcctcgaggtcgtctgggg-caccgtcgaccacctcaa 462 Query: 82 ggccgtcaaggactcgcccgacctccgctccgccgtcgaggacgtccagcccgagnaaag 141 ||||||||||||||| ||||||||||| |||||||||||||||| ||||| || |||| Sbjct: 463 ggccgtcaaggactcttccgacctccgcgccgccgtcgaggacgttcagcctga-caaag 521 Query: 142 tgaaattctacctgagactggggcagagcaagcctatctacgaggccttcaacgccatca 201 | |||||| | || || ||||| |||||||||||||| ||| | || ||||||||||| | Sbjct: 522 tcaaattccaactaaggctgggccagagcaagcctatataccaagctttcaacgccataa 581 Query: 202 ggaattcttcagactgggacagcctcagcgacgcccgcaagcgtgtcgtcgaaggccaaa 261 ||||||||||||||||||| | |||||| || || ||||||||| | || |||| ||||| Sbjct: 582 ggaattcttcagactgggaaaccctcagtgaggctcgcaagcgtatagtagaagcccaaa 641 Query: 262 taaaggatgctgttcttggtggagttgcgcttgaggatgagcagagagagatatttaatc 321 | ||||| || ||||| ||||||| || ||||||||||| ||||| |||| |||||||| Sbjct: 642 tcaaggaagccgttctaagtggagtcgcacttgaggatgaacagagggagaaatttaatc 701 Query: 322 aaatccaacaggaacttgaaaaactgtcagagaaattcagtgaaaatgtgttggatgcaa 381 ||||| | ||||| ||||| || | || | || ||||||||||||||| ||||||||| Sbjct: 702 aaatcgagcaggagcttgagaagttaacacaaaagttcagtgaaaatgtgctggatgcaa 761 Query: 382 caaagaaatttgagaaattggttactgacaagaaagaaattgatggtttacctgcctcag 441 | ||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||| ||| Sbjct: 762 ctaagaaatttgagaaattaattactgataagaatgaaattgatgggttacctgccacag 821 Query: 442 ctcttggcttggcagcacagactgctgtttcaaagggacatgaaaatgcttcagctgaaa 501 | |||||||| |||||||||||||| | |||||||| |||||||||||||| ||||||| Sbjct: 822 cacttggcttagcagcacagactgccgcgtcaaagggtcatgaaaatgcttcggctgaaa 881 Query: 502 atggaccttggatgatcacactagacgcaccaagcttcacggctgtcatgcaacatgcta 561 | ||||| ||||| |||||| | || || ||||||| | ||||| ||||| ||||| Sbjct: 882 acggaccatggatcatcacattggatgcgccaagctatattgctgttatgcagcatgcac 941 Query: 562 agaacagggctctccgtgaagaagtatatcgtgcttatctaacccgtgcatcaagcggtg 621 |||||| || || ||||||||||| ||||||||||| ||||||||||| || || || | Sbjct: 942 ggaacagagcacttcgtgaagaagtttatcgtgcttacctaacccgtgcctctagtggcg 1001 Query: 622 atcttgataacactgatatcataagtca 649 | ||||||||||| ||||||| ||||| Sbjct: 1002 accttgataacaccaatatcatcagtca 1029
>dbj|AK103668.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033135L17, full insert sequence Length = 1787 Score = 232 bits (117), Expect = 1e-57 Identities = 249/293 (84%) Strand = Plus / Plus Query: 357 ttcagtgaaaatgtgttggatgcaacaaagaaatttgagaaattggttactgacaagaaa 416 ||||||||||||||| |||||||||| ||||||||||||||||| ||||||| ||||| Sbjct: 13 ttcagtgaaaatgtgctggatgcaactaagaaatttgagaaattaattactgataagaat 72 Query: 417 gaaattgatggtttacctgcctcagctcttggcttggcagcacagactgctgtttcaaag 476 ||||||||||| ||||||||| |||| |||||||| |||||||||||||| | |||||| Sbjct: 73 gaaattgatgggttacctgccacagcacttggcttagcagcacagactgccgcgtcaaag 132 Query: 477 ggacatgaaaatgcttcagctgaaaatggaccttggatgatcacactagacgcaccaagc 536 || |||||||||||||| |||||||| ||||| ||||| |||||| | || || |||||| Sbjct: 133 ggtcatgaaaatgcttcggctgaaaacggaccatggatcatcacattggatgcgccaagc 192 Query: 537 ttcacggctgtcatgcaacatgctaagaacagggctctccgtgaagaagtatatcgtgct 596 | | ||||| ||||| ||||| |||||| || || ||||||||||| ||||||||| Sbjct: 193 tatattgctgttatgcagcatgcacggaacagagcacttcgtgaagaagtttatcgtgct 252 Query: 597 tatctaacccgtgcatcaagcggtgatcttgataacactgatatcataagtca 649 || ||||||||||| || || || || ||||||||||| ||||||| ||||| Sbjct: 253 tacctaacccgtgcctctagtggcgaccttgataacaccaatatcatcagtca 305
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 139 bits (70), Expect = 1e-29 Identities = 100/110 (90%) Strand = Plus / Minus Query: 357 ttcagtgaaaatgtgttggatgcaacaaagaaatttgagaaattggttactgacaagaaa 416 ||||||||||||||| |||||||||| ||||||||||||||||| ||||||| ||||| Sbjct: 35705331 ttcagtgaaaatgtgctggatgcaactaagaaatttgagaaattaattactgataagaat 35705272 Query: 417 gaaattgatggtttacctgcctcagctcttggcttggcagcacagactgc 466 ||||||||||| ||||||||| |||| |||||||| |||||||||||||| Sbjct: 35705271 gaaattgatgggttacctgccacagcacttggcttagcagcacagactgc 35705222 Score = 103 bits (52), Expect = 7e-19 Identities = 92/105 (87%), Gaps = 1/105 (0%) Strand = Plus / Minus Query: 22 ccgctcgngcgcatcgtcgacaggctcgncgtcgtctggnaacgtcgtcgaccacctcaa 81 ||||||| ||| ||||||||||| |||| ||||||||| | ||||||||||||||| Sbjct: 35706475 ccgctcgagcggatcgtcgacagcctcgaggtcgtctgggg-caccgtcgaccacctcaa 35706417 Query: 82 ggccgtcaaggactcgcccgacctccgctccgccgtcgaggacgt 126 ||||||||||||||| ||||||||||| |||||||||||||||| Sbjct: 35706416 ggccgtcaaggactcttccgacctccgcgccgccgtcgaggacgt 35706372 Score = 101 bits (51), Expect = 3e-18 Identities = 144/175 (82%) Strand = Plus / Minus Query: 475 agggacatgaaaatgcttcagctgaaaatggaccttggatgatcacactagacgcaccaa 534 |||| |||||||||||||| |||||||| ||||| ||||| |||||| | || || |||| Sbjct: 35705135 agggtcatgaaaatgcttcggctgaaaacggaccatggatcatcacattggatgcgccaa 35705076 Query: 535 gcttcacggctgtcatgcaacatgctaagaacagggctctccgtgaagaagtatatcgtg 594 ||| | ||||| ||||| ||||| |||||| || || ||||||||||| ||||||| Sbjct: 35705075 gctatattgctgttatgcagcatgcacggaacagagcacttcgtgaagaagtttatcgtg 35705016 Query: 595 cttatctaacccgtgcatcaagcggtgatcttgataacactgatatcataagtca 649 |||| ||||||||||| || || || || ||||||||||| ||||||| ||||| Sbjct: 35705015 cttacctaacccgtgcctctagtggcgaccttgataacaccaatatcatcagtca 35704961 Score = 87.7 bits (44), Expect = 4e-14 Identities = 92/108 (85%) Strand = Plus / Minus Query: 138 aaagtgaaattctacctgagactggggcagagcaagcctatctacgaggccttcaacgcc 197 ||||| |||||| | || || ||||| |||||||||||||| ||| | || ||||||||| Sbjct: 35706275 aaagtcaaattccaactaaggctgggccagagcaagcctatataccaagctttcaacgcc 35706216 Query: 198 atcaggaattcttcagactgggacagcctcagcgacgcccgcaagcgt 245 || |||||||||||||||||||| | |||||| || || ||||||||| Sbjct: 35706215 ataaggaattcttcagactgggaaaccctcagtgaggctcgcaagcgt 35706168 Score = 60.0 bits (30), Expect = 1e-05 Identities = 60/70 (85%) Strand = Plus / Minus Query: 257 ccaaataaaggatgctgttcttggtggagttgcgcttgaggatgagcagagagagatatt 316 |||||| ||||| || ||||| ||||||| || ||||||||||| ||||| |||| ||| Sbjct: 35705950 ccaaatcaaggaagccgttctaagtggagtcgcacttgaggatgaacagagggagaaatt 35705891 Query: 317 taatcaaatc 326 |||||||||| Sbjct: 35705890 taatcaaatc 35705881
>dbj|AP004043.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_D06 Length = 102239 Score = 139 bits (70), Expect = 1e-29 Identities = 100/110 (90%) Strand = Plus / Minus Query: 357 ttcagtgaaaatgtgttggatgcaacaaagaaatttgagaaattggttactgacaagaaa 416 ||||||||||||||| |||||||||| ||||||||||||||||| ||||||| ||||| Sbjct: 65945 ttcagtgaaaatgtgctggatgcaactaagaaatttgagaaattaattactgataagaat 65886 Query: 417 gaaattgatggtttacctgcctcagctcttggcttggcagcacagactgc 466 ||||||||||| ||||||||| |||| |||||||| |||||||||||||| Sbjct: 65885 gaaattgatgggttacctgccacagcacttggcttagcagcacagactgc 65836 Score = 103 bits (52), Expect = 7e-19 Identities = 92/105 (87%), Gaps = 1/105 (0%) Strand = Plus / Minus Query: 22 ccgctcgngcgcatcgtcgacaggctcgncgtcgtctggnaacgtcgtcgaccacctcaa 81 ||||||| ||| ||||||||||| |||| ||||||||| | ||||||||||||||| Sbjct: 67089 ccgctcgagcggatcgtcgacagcctcgaggtcgtctgggg-caccgtcgaccacctcaa 67031 Query: 82 ggccgtcaaggactcgcccgacctccgctccgccgtcgaggacgt 126 ||||||||||||||| ||||||||||| |||||||||||||||| Sbjct: 67030 ggccgtcaaggactcttccgacctccgcgccgccgtcgaggacgt 66986 Score = 101 bits (51), Expect = 3e-18 Identities = 144/175 (82%) Strand = Plus / Minus Query: 475 agggacatgaaaatgcttcagctgaaaatggaccttggatgatcacactagacgcaccaa 534 |||| |||||||||||||| |||||||| ||||| ||||| |||||| | || || |||| Sbjct: 65749 agggtcatgaaaatgcttcggctgaaaacggaccatggatcatcacattggatgcgccaa 65690 Query: 535 gcttcacggctgtcatgcaacatgctaagaacagggctctccgtgaagaagtatatcgtg 594 ||| | ||||| ||||| ||||| |||||| || || ||||||||||| ||||||| Sbjct: 65689 gctatattgctgttatgcagcatgcacggaacagagcacttcgtgaagaagtttatcgtg 65630 Query: 595 cttatctaacccgtgcatcaagcggtgatcttgataacactgatatcataagtca 649 |||| ||||||||||| || || || || ||||||||||| ||||||| ||||| Sbjct: 65629 cttacctaacccgtgcctctagtggcgaccttgataacaccaatatcatcagtca 65575 Score = 87.7 bits (44), Expect = 4e-14 Identities = 92/108 (85%) Strand = Plus / Minus Query: 138 aaagtgaaattctacctgagactggggcagagcaagcctatctacgaggccttcaacgcc 197 ||||| |||||| | || || ||||| |||||||||||||| ||| | || ||||||||| Sbjct: 66889 aaagtcaaattccaactaaggctgggccagagcaagcctatataccaagctttcaacgcc 66830 Query: 198 atcaggaattcttcagactgggacagcctcagcgacgcccgcaagcgt 245 || |||||||||||||||||||| | |||||| || || ||||||||| Sbjct: 66829 ataaggaattcttcagactgggaaaccctcagtgaggctcgcaagcgt 66782 Score = 60.0 bits (30), Expect = 1e-05 Identities = 60/70 (85%) Strand = Plus / Minus Query: 257 ccaaataaaggatgctgttcttggtggagttgcgcttgaggatgagcagagagagatatt 316 |||||| ||||| || ||||| ||||||| || ||||||||||| ||||| |||| ||| Sbjct: 66564 ccaaatcaaggaagccgttctaagtggagtcgcacttgaggatgaacagagggagaaatt 66505 Query: 317 taatcaaatc 326 |||||||||| Sbjct: 66504 taatcaaatc 66495
>ref|NM_125960.2| Arabidopsis thaliana metalloendopeptidase AT5G65620 mRNA, complete cds Length = 2918 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 366 aatgtgttggatgcaacaaagaaatttgagaaattggttactgacaagaaaga 418 ||||| ||||||||||||||||||||||| || ||| | || ||||||||||| Sbjct: 790 aatgttttggatgcaacaaagaaatttgaaaagttgataacagacaagaaaga 842 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 544 ctgtcatgcaacatgctaagaacagggctctccgtgaagaagtatatcgtgctta 598 ||||||||||||||||||| ||| | ||||| ||||| ||||| || |||||||| Sbjct: 968 ctgtcatgcaacatgctaaaaaccgtgctctgcgtgaggaagtctaccgtgctta 1022
>gb|AY142682.1| Arabidopsis thaliana putative oligopeptidase A (At5g65620) mRNA, complete cds Length = 2407 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 366 aatgtgttggatgcaacaaagaaatttgagaaattggttactgacaagaaaga 418 ||||| ||||||||||||||||||||||| || ||| | || ||||||||||| Sbjct: 787 aatgttttggatgcaacaaagaaatttgaaaagttgataacagacaagaaaga 839 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 544 ctgtcatgcaacatgctaagaacagggctctccgtgaagaagtatatcgtgctta 598 ||||||||||||||||||| ||| | ||||| ||||| ||||| || |||||||| Sbjct: 965 ctgtcatgcaacatgctaaaaaccgtgctctgcgtgaggaagtctaccgtgctta 1019
>gb|AY045936.1| Arabidopsis thaliana putative oligopeptidase A (At5g65620) mRNA, complete cds Length = 2510 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 366 aatgtgttggatgcaacaaagaaatttgagaaattggttactgacaagaaaga 418 ||||| ||||||||||||||||||||||| || ||| | || ||||||||||| Sbjct: 790 aatgttttggatgcaacaaagaaatttgaaaagttgataacagacaagaaaga 842 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 544 ctgtcatgcaacatgctaagaacagggctctccgtgaagaagtatatcgtgctta 598 ||||||||||||||||||| ||| | ||||| ||||| ||||| || |||||||| Sbjct: 968 ctgtcatgcaacatgctaaaaaccgtgctctgcgtgaggaagtctaccgtgctta 1022
>dbj|AB026639.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L13 Length = 63921 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 366 aatgtgttggatgcaacaaagaaatttgagaaattggttactgacaagaaaga 418 ||||| ||||||||||||||||||||||| || ||| | || ||||||||||| Sbjct: 39385 aatgttttggatgcaacaaagaaatttgaaaagttgataacagacaagaaaga 39437 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 544 ctgtcatgcaacatgctaagaacagggctctccgtgaagaagtatatcgtgctta 598 ||||||||||||||||||| ||| | ||||| ||||| ||||| || |||||||| Sbjct: 39657 ctgtcatgcaacatgctaaaaaccgtgctctgcgtgaggaagtctaccgtgctta 39711
>dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT11E23, TM0557 Length = 87695 Score = 48.1 bits (24), Expect = 0.036 Identities = 72/88 (81%) Strand = Plus / Plus Query: 373 tggatgcaacaaagaaatttgagaaattggttactgacaagaaagaaattgatggtttac 432 ||||||||||||| || ||||| || || |||| || |||||||| ||||| || |||| Sbjct: 11229 tggatgcaacaaaaaagtttgaaaagctgattacagataagaaagagattgaaggattac 11288 Query: 433 ctgcctcagctcttggcttggcagcaca 460 |||| | |||||||| ||||| ||||| Sbjct: 11289 ctgcaactgctcttgggttggctgcaca 11316
>dbj|AP004578.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT17H01, TM0541, complete sequence Length = 110985 Score = 48.1 bits (24), Expect = 0.036 Identities = 72/88 (81%) Strand = Plus / Plus Query: 373 tggatgcaacaaagaaatttgagaaattggttactgacaagaaagaaattgatggtttac 432 ||||||||||||| || ||||| || || |||| || |||||||| ||||| || |||| Sbjct: 98832 tggatgcaacaaaaaagtttgaaaagctgattacagataagaaagagattgaaggattac 98891 Query: 433 ctgcctcagctcttggcttggcagcaca 460 |||| | |||||||| ||||| ||||| Sbjct: 98892 ctgcaactgctcttgggttggctgcaca 98919
>gb|AC067981.6| Homo sapiens chromosome 18, clone RP11-805E19, complete sequence Length = 158750 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 296 ggatgagcagagagagatattta 318 ||||||||||||||||||||||| Sbjct: 146386 ggatgagcagagagagatattta 146364
>gb|AC026003.10| Homo sapiens chromosome 18, clone RP11-715P20, complete sequence Length = 178733 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 296 ggatgagcagagagagatattta 318 ||||||||||||||||||||||| Sbjct: 157619 ggatgagcagagagagatattta 157641
>gb|AC108773.9| Mus musculus chromosome 5, clone RP23-118L1, complete sequence Length = 222706 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 418 aaattgatggtttacctgcctcagct 443 ||||||||||| |||||||||||||| Sbjct: 26498 aaattgatggtctacctgcctcagct 26473
>gb|AC026866.8| Homo sapiens BAC clone RP11-420P20 from 7, complete sequence Length = 179438 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 263 aaaggatgctgttcttggtggagtt 287 ||||||| ||||||||||||||||| Sbjct: 101484 aaaggattctgttcttggtggagtt 101460
>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome Length = 1485148 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 410 caagaaagaaattgatggttt 430 ||||||||||||||||||||| Sbjct: 280133 caagaaagaaattgatggttt 280113
>gb|AC010343.7| Homo sapiens chromosome 5 clone CTD-2017D15, complete sequence Length = 133836 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 380 aacaaagaaatttgagaaatt 400 ||||||||||||||||||||| Sbjct: 116718 aacaaagaaatttgagaaatt 116738
>gb|AC022443.5| Homo sapiens chromosome 5 clone RP11-36C20, complete sequence Length = 126867 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 380 aacaaagaaatttgagaaatt 400 ||||||||||||||||||||| Sbjct: 36679 aacaaagaaatttgagaaatt 36659
>gb|AC124908.3| Equus caballus clone CH241-67M21, complete sequence Length = 170710 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 gacaagaaagaaattgatggt 428 ||||||||||||||||||||| Sbjct: 110672 gacaagaaagaaattgatggt 110692
>gb|AC068551.6| Homo sapiens BAC clone RP11-720N12 from 2, complete sequence Length = 118334 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 383 aaagaaatttgagaaattggt 403 ||||||||||||||||||||| Sbjct: 32346 aaagaaatttgagaaattggt 32326
>ref|XM_218953.3| PREDICTED: Rattus norvegicus similar to DRE1 protein (LOC308850), mRNA Length = 1868 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 210 tcagactgggacagcctcagc 230 ||||||||||||||||||||| Sbjct: 1758 tcagactgggacagcctcagc 1778
>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome Length = 1664970 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 407 tgacaagaaagaaattgatggttta 431 |||||||||||||||||||| |||| Sbjct: 1496086 tgacaagaaagaaattgatgcttta 1496110
>gb|DP000020.1| Equus caballus target 1 genomic scaffold Length = 1907055 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 gacaagaaagaaattgatggt 428 ||||||||||||||||||||| Sbjct: 1346364 gacaagaaagaaattgatggt 1346384
>gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0426G01, complete sequence Length = 173074 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 344 actgtcagagaaattcagtgaaaa 367 |||||||||||||||| ||||||| Sbjct: 90569 actgtcagagaaattcggtgaaaa 90592
>gb|AY303753.1| Takifugu rubripes erythropoietin (EPO) gene, complete cds, alternatively spliced Length = 63527 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 acctccgctccgccgtcgag 121 |||||||||||||||||||| Sbjct: 40022 acctccgctccgccgtcgag 40041
>gb|AC133464.11| Mus musculus chromosome 16, clone RP24-459O21, complete sequence Length = 142742 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 aggaattcttcagactggga 220 |||||||||||||||||||| Sbjct: 66599 aggaattcttcagactggga 66580
>ref|XM_713907.1| Candida albicans SC5314 putative transcription factor (CaO19_6038), mRNA Length = 1752 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 627 gataacactgatatcataag 646 |||||||||||||||||||| Sbjct: 412 gataacactgatatcataag 431
>ref|XM_713805.1| Candida albicans SC5314 putative transcription factor (CaO19_13459), mRNA Length = 1752 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 627 gataacactgatatcataag 646 |||||||||||||||||||| Sbjct: 412 gataacactgatatcataag 431
>gb|AC171266.22| Medicago truncatula clone mth2-14o4, complete sequence Length = 137052 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 404 tactgacaagaaagaaattgatggttta 431 |||| |||||||||||||||||| |||| Sbjct: 50647 tactaacaagaaagaaattgatgattta 50674
>gb|AC144932.6| Mus musculus BAC clone RP24-462H2 from chromosome 6, complete sequence Length = 140840 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 624 cttgataacactgatatcat 643 |||||||||||||||||||| Sbjct: 127473 cttgataacactgatatcat 127454
>gb|AC116922.2| Dictyostelium discoideum chromosome 2 map 6061442-6097630 strain AX4, complete sequence Length = 36188 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 agagagatatttaatcaaat 325 |||||||||||||||||||| Sbjct: 29936 agagagatatttaatcaaat 29955
>gb|AC115579.3| Dictyostelium discoideum chromosome 2 map 6097680-6105897 strain AX4, complete sequence Length = 8211 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 agagagatatttaatcaaat 325 |||||||||||||||||||| Sbjct: 4339 agagagatatttaatcaaat 4358
>gb|AC147153.2| Mus musculus chromosome y clone RP24-373C15, complete sequence Length = 147194 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 tgcctcagctcttggcttgg 453 |||||||||||||||||||| Sbjct: 134538 tgcctcagctcttggcttgg 134519
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 227 cagcgacgcccgcaagcgtgtcgt 250 ||||| |||||||||||||||||| Sbjct: 1210039 cagcgccgcccgcaagcgtgtcgt 1210062
>ref|XM_845225.1| PREDICTED: Canis familiaris hypothetical protein LOC608257 (LOC608257), mRNA Length = 1581 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 gttgcgcttgaggatgagca 304 |||||||||||||||||||| Sbjct: 282 gttgcgcttgaggatgagca 263
>gb|AC163724.4| Mus musculus BAC clone RP23-464C19 from chromosome 6, complete sequence Length = 177662 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 624 cttgataacactgatatcat 643 |||||||||||||||||||| Sbjct: 151036 cttgataacactgatatcat 151055
>emb|AL713851.8| Human DNA sequence from clone RP11-526P5 on chromosome 10 Contains two novel genes and three CpG islands, complete sequence Length = 158779 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 ctcagctcttggcttggcag 456 |||||||||||||||||||| Sbjct: 7489 ctcagctcttggcttggcag 7470
>emb|AL353660.11| Human DNA sequence from clone RP11-459P23 on chromosome 13 Contains a novel gene, complete sequence Length = 129241 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 ttcaaagggacatgaaaatg 489 |||||||||||||||||||| Sbjct: 56298 ttcaaagggacatgaaaatg 56279
>gb|AC055748.21| Homo sapiens 3 BAC RP11-402J7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 149897 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 caacaggaacttgaaaaact 346 |||||||||||||||||||| Sbjct: 17598 caacaggaacttgaaaaact 17617
>gb|AC011848.11| Homo sapiens chromosome 17, clone RP11-354C22, complete sequence Length = 163577 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 346 tgtcagagaaattcagtgaaaatg 369 ||||||||||| |||||||||||| Sbjct: 149115 tgtcagagaaagtcagtgaaaatg 149092
>gb|AC159895.2| Mus musculus BAC clone RP23-260J19 from chromosome 9, complete sequence Length = 191882 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 aacaaagaaatttgagaaat 399 |||||||||||||||||||| Sbjct: 50207 aacaaagaaatttgagaaat 50188
>emb|AL645544.16| Mouse DNA sequence from clone RP23-327M13 on chromosome 1 Contains the gene for an ortholog of human amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19 (ALS2CR19), the 3' end of a novel gene and two CpG islands, complete sequence Length = 216046 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 tgcctcagctcttggcttgg 453 |||||||||||||||||||| Sbjct: 196830 tgcctcagctcttggcttgg 196811
>emb|AL645946.6| Mouse DNA sequence from clone DN-276O13 on chromosome 1 Contains part of the ortholog of human amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 19 ALS2CR19 (2810455B10RIK 6030439I24RIK 2010002N16RIK), and the 3' end of a novel gene (4930448K12RIK 4930412B09RIK), complete sequence Length = 140936 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 tgcctcagctcttggcttgg 453 |||||||||||||||||||| Sbjct: 123926 tgcctcagctcttggcttgg 123907
>gb|AC022790.8| Homo sapiens chromosome 8, clone RP11-744J10, complete sequence Length = 204034 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 425 tggtttacctgcctcagctcttgg 448 |||||||||||||||||| ||||| Sbjct: 121247 tggtttacctgcctcagcacttgg 121270
>gb|AC091113.7| Homo sapiens chromosome 17, clone RP11-410N7, complete sequence Length = 129396 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 346 tgtcagagaaattcagtgaaaatg 369 ||||||||||| |||||||||||| Sbjct: 21673 tgtcagagaaagtcagtgaaaatg 21650
>emb|BX927397.10| Zebrafish DNA sequence from clone DKEY-87H7 in linkage group 7, complete sequence Length = 187890 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 472 caaagggacatgaaaatgct 491 |||||||||||||||||||| Sbjct: 104330 caaagggacatgaaaatgct 104349
>gb|AC141866.11| Medicago truncatula clone mth2-12p22, complete sequence Length = 126907 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 492 tcagctgaaaatggaccttggatgatca 519 ||||||||||||| |||||| ||||||| Sbjct: 21504 tcagctgaaaatgtaccttgaatgatca 21531
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 gcttggcagcacagactgct 467 |||||||||||||||||||| Sbjct: 2532272 gcttggcagcacagactgct 2532253
>gb|AC091602.6| Homo sapiens BAC clone RP11-655M19 from 4, complete sequence Length = 189458 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ttgaaaaactgtcagagaaa 356 |||||||||||||||||||| Sbjct: 134513 ttgaaaaactgtcagagaaa 134532
>gb|AC120570.5| Rattus norvegicus 1 BAC CH230-96N8 (Children's Hospital Oakland Research Institute) complete sequence Length = 227607 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 agaaagaaattgatggttta 431 |||||||||||||||||||| Sbjct: 103084 agaaagaaattgatggttta 103065
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 ccgtcgaggacgtccagccc 133 |||||||||||||||||||| Sbjct: 182614 ccgtcgaggacgtccagccc 182595
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 344 actgtcagagaaattcagtgaaaa 367 |||||||||||||||| ||||||| Sbjct: 20418824 actgtcagagaaattcggtgaaaa 20418847
>gb|AC010880.8| Homo sapiens BAC clone RP11-282G6 from 2, complete sequence Length = 115431 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aaattctacctgagactggg 163 |||||||||||||||||||| Sbjct: 55438 aaattctacctgagactggg 55419
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cgccgtcgaggacgtccagc 131 |||||||||||||||||||| Sbjct: 1797737 cgccgtcgaggacgtccagc 1797756
>dbj|AK110135.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-161-D01, full insert sequence Length = 3774 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 111 ccgccgtcgaggacgtccagcccg 134 |||||||||||||| ||||||||| Sbjct: 367 ccgccgtcgaggacatccagcccg 390
>ref|NM_211450.1| Eremothecium gossypii AGL279Cp (AGL279C), mRNA Length = 1356 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 ccgtcgaggacgtccagccc 133 |||||||||||||||||||| Sbjct: 929 ccgtcgaggacgtccagccc 948
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 448 gcttggcagcacagactgct 467 |||||||||||||||||||| Sbjct: 1784778 gcttggcagcacagactgct 1784797 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,698,748 Number of Sequences: 3902068 Number of extensions: 6698748 Number of successful extensions: 141271 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 140912 Number of HSP's gapped (non-prelim): 356 length of query: 650 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 627 effective length of database: 17,143,297,704 effective search space: 10748847660408 effective search space used: 10748847660408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)