ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baalj06 |
|---|---|
| Clone Library Name | barley_pub |
>THF1_ORYSA (Q84PB7) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 287 Score = 286 bits (733), Expect = 3e-77 Identities = 146/180 (81%), Positives = 157/180 (87%), Gaps = 1/180 (0%) Frame = +1 Query: 85 MAAISSLPFAALRRAADWRPSTATAAVSV-SGGVMLNXXXXXXXXXXXXCVITAGDIPPT 261 MAAISSLPFAALRRAAD RPSTA AA +G V+L+ CV TAGD+PPT Sbjct: 1 MAAISSLPFAALRRAADCRPSTAAAAAGAGAGAVVLSVRPRRGSRSVVRCVATAGDVPPT 60 Query: 262 VADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMEG 441 VA+TKMNFLKSYKRPI SIYSTVLQELLVQQHLMRYK+TYQYD VFALGFVTVYDQLMEG Sbjct: 61 VAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYDAVFALGFVTVYDQLMEG 120 Query: 442 YPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWARSQNGNLLVEFSSRDGEIESILKD 621 YPSNEDRDAIFK+Y+TALNEDPEQYRADAQ+MEEWARSQNGN LVEFSS+DGEIE+ILKD Sbjct: 121 YPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNSLVEFSSKDGEIEAILKD 180
>THF1_SOLTU (Q7XAB8) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 293 Score = 212 bits (540), Expect = 6e-55 Identities = 108/189 (57%), Positives = 141/189 (74%), Gaps = 10/189 (5%) Frame = +1 Query: 85 MAAISSLPFAALRRAADWRPSTATAAVSVS----------GGVMLNXXXXXXXXXXXXCV 234 MAA++S+ F+A+ ++A+ R S+ +++ S+ V + Sbjct: 1 MAAVTSVSFSAITQSAE-RKSSVSSSRSIDTFRFRSNFSFDSVNVRSSNSTSRFVVHCTS 59 Query: 235 ITAGDIPPTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFV 414 +A D+P TVADTK+ FL +YKRPIP++Y+TVLQEL+VQQHL RYK +YQYDPVFALGFV Sbjct: 60 SSAADLP-TVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFALGFV 118 Query: 415 TVYDQLMEGYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWARSQNGNLLVEFSSRD 594 TVYDQLMEGYPS EDR+AIFK+Y+ AL EDPEQYRADAQ++EEWAR+QN N LV+FSS++ Sbjct: 119 TVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFSSKE 178 Query: 595 GEIESILKD 621 GEIE+I KD Sbjct: 179 GEIENIFKD 187
>THF1_ARATH (Q9SKT0) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 300 Score = 209 bits (533), Expect = 4e-54 Identities = 111/184 (60%), Positives = 136/184 (73%), Gaps = 7/184 (3%) Frame = +1 Query: 91 AISSLPFAALRRA------ADWRPSTATAAVSVS-GGVMLNXXXXXXXXXXXXCVITAGD 249 AISSL F AL ++ A RP + + + LN +TA D Sbjct: 5 AISSLSFPALGQSDKISNFASSRPLASAIRICTKFSRLSLNSRSTSKSLIHCMSNVTA-D 63 Query: 250 IPPTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQ 429 +PP V++TK FLK+YKRPIPSIY+TVLQEL+VQQHLMRYK TY+YDPVFALGFVTVYDQ Sbjct: 64 VPP-VSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFVTVYDQ 122 Query: 430 LMEGYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWARSQNGNLLVEFSSRDGEIES 609 LMEGYPS++DRDAIFK+Y+ ALNEDP+QYR DAQ+MEEWARSQ LV+FSS++G+IE+ Sbjct: 123 LMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKEGDIEA 182 Query: 610 ILKD 621 +LKD Sbjct: 183 VLKD 186
>THF1_ANASP (Q8YZ41) Protein thf1| Length = 233 Score = 99.0 bits (245), Expect = 1e-20 Identities = 45/116 (38%), Positives = 76/116 (65%) Frame = +1 Query: 259 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 438 TV+DTK F + RPI +IY V++EL+V+ HL+ + Y+P++ALG VT +D+ ME Sbjct: 6 TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFME 65 Query: 439 GYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWARSQNGNLLVEFSSRDGEIE 606 GY D+++IF + A+ ++P++YR DA+R++ A+S N LV + S+ ++ Sbjct: 66 GYQPERDKESIFSAICQAVEQEPQRYRQDAERLQAVAQSLPVNDLVAWLSQANHLQ 121
>THF1_ANAVT (Q3M4B2) Protein thf1| Length = 233 Score = 97.4 bits (241), Expect = 3e-20 Identities = 44/116 (37%), Positives = 76/116 (65%) Frame = +1 Query: 259 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 438 TV+DTK F + RPI +IY V++EL+V+ HL+ + Y+P++ALG VT +D+ M+ Sbjct: 6 TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFMQ 65 Query: 439 GYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWARSQNGNLLVEFSSRDGEIE 606 GY D+++IF + A+ ++P++YR DA+R++ A+S N LV + S+ ++ Sbjct: 66 GYQPERDKESIFSAICQAVEQEPQRYRQDAERLKAVAQSLPVNDLVAWLSQANHLQ 121
>THF1_SYNEL (Q8DJT8) Protein thf1| Length = 222 Score = 93.6 bits (231), Expect = 4e-19 Identities = 47/112 (41%), Positives = 67/112 (59%) Frame = +1 Query: 253 PPTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQL 432 P TV+DTK F ++ RPI SIY ++ELLV+ HL+R ++Y P+FALG VT +DQ Sbjct: 4 PRTVSDTKRAFYAAHTRPIHSIYRRFIEELLVEIHLLRVNVDFRYSPLFALGVVTAFDQF 63 Query: 433 MEGYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWARSQNGNLLVEFSS 588 MEGY DRD IF + A +P+Q + DA +++ +L E +S Sbjct: 64 MEGYQPEGDRDRIFHALCVAEEMNPQQLKEDAASWQQYQGRPLSQILDELNS 115
>THF1_SYNJB (P0C1D1) Protein thf1| Length = 239 Score = 88.2 bits (217), Expect = 2e-17 Identities = 45/95 (47%), Positives = 61/95 (64%) Frame = +1 Query: 259 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 438 T++ TK F +Y RPI ++Y V++ELLV+ HL ST+ YDP FALG VT+YD LME Sbjct: 6 TLSATKAAFFSAYPRPINAVYRRVVEELLVELHLTTVNSTFVYDPFFALGLVTLYDGLME 65 Query: 439 GYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEE 543 Y E R+AIF + AL+ PE R +A+ + E Sbjct: 66 AYHPPEQREAIFNALCKALHLKPEVLRKNARDLLE 100
>THF1_SYNJA (Q2JSQ3) Protein thf1| Length = 239 Score = 88.2 bits (217), Expect = 2e-17 Identities = 50/109 (45%), Positives = 65/109 (59%), Gaps = 4/109 (3%) Frame = +1 Query: 259 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 438 T++ TK F +Y RPI + Y V++ELLV+ HL S + YDP FALG VT+YD LME Sbjct: 6 TLSATKAAFFSAYPRPINAAYRRVVEELLVELHLTTVNSAFVYDPFFALGLVTLYDSLME 65 Query: 439 GYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWARS----QNGNLL 573 Y E R+AIF + AL+ PE R +A+ + E RS Q NLL Sbjct: 66 AYHPPEQREAIFNALCKALHLKPEVLRKNARDLLELMRSGDPVQRYNLL 114
>THF1_SYNP7 (Q31MY4) Protein thf1| Length = 254 Score = 87.4 bits (215), Expect = 3e-17 Identities = 42/99 (42%), Positives = 61/99 (61%) Frame = +1 Query: 256 PTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLM 435 PTV+D+K F +Y RPI +Y V++ELLV+ HL+ +++ YDP+FALG VT +D M Sbjct: 5 PTVSDSKRAFYAAYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFM 64 Query: 436 EGYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWAR 552 Y E +F + A+ ++PEQYR DA + E R Sbjct: 65 SSYRPIEAVGPLFTALTQAVRQNPEQYRHDANAIAEQVR 103
>THF1_SYNP6 (Q5N664) Protein thf1| Length = 254 Score = 87.4 bits (215), Expect = 3e-17 Identities = 42/99 (42%), Positives = 61/99 (61%) Frame = +1 Query: 256 PTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLM 435 PTV+D+K F +Y RPI +Y V++ELLV+ HL+ +++ YDP+FALG VT +D M Sbjct: 5 PTVSDSKRAFYAAYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFM 64 Query: 436 EGYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWAR 552 Y E +F + A+ ++PEQYR DA + E R Sbjct: 65 SSYRPIEAVGPLFTALTQAVRQNPEQYRHDANAIAEQVR 103
>THF1_GLOVI (Q7NKS7) Protein thf1| Length = 228 Score = 84.7 bits (208), Expect = 2e-16 Identities = 42/90 (46%), Positives = 56/90 (62%) Frame = +1 Query: 259 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 438 TV+D+K F +Y RP+ SIY V+ ELLV+ HL+ +++DP+FA G +T Y LME Sbjct: 6 TVSDSKRAFFAAYPRPVNSIYRRVIDELLVEVHLLITNQDFRHDPLFATGLLTAYQALME 65 Query: 439 GYPSNEDRDAIFKSYVTALNEDPEQYRADA 528 GY E RDAI ++ TAL EQ DA Sbjct: 66 GYTPVEQRDAILRALCTALELSYEQLHTDA 95
>THF1_SYNY3 (P73956) Protein thf1| Length = 240 Score = 84.7 bits (208), Expect = 2e-16 Identities = 39/93 (41%), Positives = 57/93 (61%) Frame = +1 Query: 259 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 438 TV+D K F Y RPI SIY ++ELLV+ HL+ + YDP+FALG VT ++ M+ Sbjct: 6 TVSDAKRKFFTHYSRPISSIYRRFVEELLVEMHLLSVNIDFTYDPIFALGIVTSFNSFMQ 65 Query: 439 GYPSNEDRDAIFKSYVTALNEDPEQYRADAQRM 537 GY E AIF + ++++P+Q R DA+ + Sbjct: 66 GYQPAEQLPAIFNALCHGVDQNPDQVRQDAKNV 98
>THF1_SYNSC (Q3AJN7) Protein thf1| Length = 215 Score = 61.2 bits (147), Expect = 2e-09 Identities = 30/110 (27%), Positives = 62/110 (56%) Frame = +1 Query: 259 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 438 T+AD+K F +++ I +Y + ELLV+ HL+ ++S ++ + +F++G TV+D ++ Sbjct: 6 TIADSKRAFHQAFPHVIAPLYRRLADELLVELHLLSHQSRFEANELFSVGLCTVFDTFIK 65 Query: 439 GYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWARSQNGNLLVEFSS 588 GY DA+F++ ++ D + R + E A+ ++ L ++ S Sbjct: 66 GYRPEAQTDALFRALCSSNGFDAAKLRKTYASLVEQAKGKDPESLKDWLS 115
>THF1_SYNPX (Q7U6N6) Protein thf1| Length = 212 Score = 60.5 bits (145), Expect = 4e-09 Identities = 29/91 (31%), Positives = 54/91 (59%) Frame = +1 Query: 259 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 438 T+AD+K F +++ I +Y + ELLV+ HL+ +++T+Q + +FA+G TV+++ + Sbjct: 6 TIADSKRAFHQAFPHVIAPLYRRIADELLVELHLLSHQATFQANSLFAVGLKTVFERFTQ 65 Query: 439 GYPSNEDRDAIFKSYVTALNEDPEQYRADAQ 531 GY E A+ + ++ D EQ + AQ Sbjct: 66 GYRPMEHPAALLSALCSSNGFDDEQLKQAAQ 96
>THF1_SYNS9 (Q3AY05) Protein thf1| Length = 215 Score = 60.5 bits (145), Expect = 4e-09 Identities = 28/101 (27%), Positives = 58/101 (57%) Frame = +1 Query: 259 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 438 T+AD+K F +++ I +Y + ELLV+ HL+ ++S+++ P+FA+G TV+D Sbjct: 6 TIADSKRAFHQAFPHVIAPLYRRLADELLVELHLLSHQSSFKTTPLFAVGLCTVFDTFSA 65 Query: 439 GYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWARSQN 561 GY E + + ++ D +R +++R + A++++ Sbjct: 66 GYRPEEHITGLLDALCSSNGYDANTFRKESKRCIDAAKTES 106
>THF1_PROMM (Q7V7R3) Protein thf1| Length = 243 Score = 58.9 bits (141), Expect = 1e-08 Identities = 31/101 (30%), Positives = 48/101 (47%) Frame = +1 Query: 259 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 438 T+AD+K F + IPS+Y ELLV+ HL+ ++ + D +FA+G V+D Sbjct: 6 TIADSKRAFNHDFPHVIPSLYRRTTDELLVELHLLSHQKHFHPDALFAIGLSQVFDVFTS 65 Query: 439 GYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWARSQN 561 GY +F + + DP R AQ+ E R + Sbjct: 66 GYRPEAHVKTLFDALCRSCGFDPNALRKQAQQTLESVRGHD 106
>THF1_PROMT (Q46L45) Protein thf1| Length = 199 Score = 57.8 bits (138), Expect = 3e-08 Identities = 29/111 (26%), Positives = 57/111 (51%) Frame = +1 Query: 259 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 438 T++D+K +F K + IP+IY + ELLV+ HL+ ++ ++ D +F+ G V+ + Sbjct: 6 TISDSKSDFHKEFPYVIPAIYRKLADELLVELHLLSHQKNFKKDSIFSTGLKEVFSKFTS 65 Query: 439 GYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWARSQNGNLLVEFSSR 591 GY +E +F + +P + ++++ A+S L F S+ Sbjct: 66 GYKPSEHATKLFDAICNCNGFNPTEINNSSEQLVSNAKSFTKEDLNSFLSK 116
>BIMA_EMENI (P17885) Protein bimA| Length = 806 Score = 32.3 bits (72), Expect = 1.2 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +1 Query: 352 QHLMRYKSTYQYDPVFALGFVTVYDQLMEGYPSNEDRDAIFKSYVTALNEDPEQYRA 522 Q L +K Q DP FA GF + Y +NE+ D +Y + +N D Y A Sbjct: 599 QALKCFKRATQLDPHFAYGFTLQGHE----YVANEEYDKALDAYRSGINADSRHYNA 651
>MKRN3_MOUSE (Q60764) Makorin-3 (Zinc finger protein 127)| Length = 544 Score = 31.2 bits (69), Expect = 2.6 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 8/60 (13%) Frame = +1 Query: 22 GVDHPPPXPVRXAGSSP--------RXSPMAAISSLPFAALRRAADWRPSTATAAVSVSG 177 GV PPP AG+S + S +A + P A+RRAA RP+ A + SG Sbjct: 25 GVSVPPPPQFEAAGASAGVSSAPLQQASGLAPLLVTPGPAIRRAASLRPAPAEGGGARSG 84
>SEC17_SCHPO (Q9P4X4) Probable vesicular-fusion protein sec17 homolog| Length = 289 Score = 30.8 bits (68), Expect = 3.4 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 16/126 (12%) Frame = +1 Query: 265 ADTKMNFLKSYKRPIPSIYSTVLQ---ELLVQQHLMRYKSTYQYD--PVF---------A 402 A T + KSY+R PS + VLQ EL ++ R + Y+ D +F A Sbjct: 75 ASTYVEAFKSYRREKPSEAARVLQIAIELFTRRGNFRRAANYKMDLGDIFEQELQDTKAA 134 Query: 403 LGFVTVYDQLMEGYPSNEDRDAIFKSYVTA--LNEDPEQYRADAQRMEEWARSQNGNLLV 576 LG Y+ E Y S++ K+Y+ A L +Y ++ E+ AR+ N L+ Sbjct: 135 LG---AYEDAGEWYSSDQADALANKAYLKAADLAGLCGEYSLAIRKFEQVARASVQNNLL 191 Query: 577 EFSSRD 594 ++S +D Sbjct: 192 KWSVKD 197
>SYNE1_HUMAN (Q8NF91) Nesprin-1 (Nuclear envelope spectrin repeat protein 1)| (Synaptic nuclear envelope protein 1) (Syne-1) (Myocyte nuclear envelope protein 1) (Myne-1) (Enaptin) Length = 8797 Score = 30.4 bits (67), Expect = 4.4 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Frame = +1 Query: 412 VTVYDQLMEGYPSNEDRDAIFKSYVTALN---EDPEQYRADAQRMEEWARSQNGNLLVEF 582 VT+ D++ + +D +I K +V +L +D E Y ++ Q +E+W +G L+ Sbjct: 3890 VTLKDKIDQLQSDYQDLCSIGKEHVFSLEAKVKDHEDYNSELQEVEKWLLQMSGRLVAPD 3949 Query: 583 SSRDGEIESI 612 +E+I Sbjct: 3950 LLETSSLETI 3959
>PFTB_CAEEL (P41992) Probable protein farnesyltransferase beta subunit (EC| 2.5.1.58) (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta) Length = 335 Score = 30.4 bits (67), Expect = 4.4 Identities = 17/48 (35%), Positives = 22/48 (45%) Frame = +3 Query: 66 QPEXLSHGGHIVASVRCTAPSGRLEAVDGDCRGERLRWRHAQREGSAG 209 +P SH G I V A +GRL+ +D D E L +R G G Sbjct: 190 RPGSESHSGQIYCCVGALAIAGRLDEIDRDRTAEWLAFRQCDSGGLNG 237
>YAMP_RHOCA (P14172) Hypothetical 28.2 kDa protein in ampR 5'region| Length = 260 Score = 30.4 bits (67), Expect = 4.4 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = +1 Query: 37 PPXPVRXAGSSPRXSPMAAISSLPFAALRRAADWRPS 147 PP P R + SP+ SP + SS P +A R WRP+ Sbjct: 213 PPSPKRLSRRSPKPSPGSRNSSAPASASR---SWRPA 246
>AKAP2_HUMAN (Q9Y2D5) A-kinase anchor protein 2 (Protein kinase A-anchoring| protein 2) (PRKA2) (AKAP-2) Length = 1103 Score = 30.4 bits (67), Expect = 4.4 Identities = 19/63 (30%), Positives = 28/63 (44%) Frame = -3 Query: 260 VGGISPAVMTQRTTEREPRRALALSMTPPETLTAAVAVDGLQSAARRSAANGSDDMAAMG 81 VGG+SP V T+ EP A PP + + D + A R + + S A+G Sbjct: 318 VGGLSPPV--HEATQPEPTERTASRQAPPHIELSNSSPDPMAEAERTNGHSPSQPRDALG 375 Query: 80 EXL 72 + L Sbjct: 376 DSL 378
>YJ9G_YEAST (P47170) Hypothetical 182.0 kDa protein in NMD5-HOM6 intergenic| region Length = 1584 Score = 26.9 bits (58), Expect(2) = 6.6 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 13/71 (18%) Frame = +1 Query: 442 YPSNED--RDAIFKSYVTALNEDPEQYR---ADAQRMEEWARSQNGNLL--------VEF 582 +PS +D R+ IF+++ LN D EQY D R + R G + +E Sbjct: 902 FPSKDDFDRNFIFRNHSVTLNTDQEQYNQTYKDLLRDMIYMRLLTGFQICVGRQVEKIEL 961 Query: 583 SSRDGEIESIL 615 S GE E+++ Sbjct: 962 SRESGESETVV 972 Score = 21.2 bits (43), Expect(2) = 6.6 Identities = 10/32 (31%), Positives = 15/32 (46%) Frame = +3 Query: 267 RYKDELPEVVQTSYSKHLQYSSTRTFGAATSD 362 R+KD P+ V YSK +++ SD Sbjct: 870 RWKDVWPKYVARKYSKWRSFTTPAELPITISD 901
>VILI2_ARATH (O81644) Villin-2| Length = 976 Score = 29.6 bits (65), Expect = 7.5 Identities = 14/52 (26%), Positives = 29/52 (55%) Frame = +1 Query: 34 PPPXPVRXAGSSPRXSPMAAISSLPFAALRRAADWRPSTATAAVSVSGGVML 189 PPP PV + +S R + +AA+S + A +++ D P+ + + + + + L Sbjct: 815 PPPRPVGTSQASQRAAAVAALSQVLVAENKKSPDTSPTRRSTSSNPADDIPL 866
>GRASP_HUMAN (Q7Z6J2) General receptor for phosphoinositides 1-associated| scaffold protein (GRP1-associated scaffold protein) Length = 395 Score = 29.6 bits (65), Expect = 7.5 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = +1 Query: 34 PPPXPVRXAGSSPRXSPMAAISSLPFAALRRAADWR 141 PPP P R G P +P P AAL R+A R Sbjct: 300 PPPPPARAFGPGPAETPAVGPGPGPRAALSRSASVR 335
>PNO_CRYPV (Q968X7) Pyruvate dehydrogenase [NADP+] (EC 1.2.1.51) (Pyruvate:NADP+| oxidoreductase) (CpPNO) Length = 1934 Score = 29.6 bits (65), Expect = 7.5 Identities = 22/85 (25%), Positives = 39/85 (45%) Frame = +1 Query: 364 RYKSTYQYDPVFALGFVTVYDQLMEGYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEE 543 RY S + YD FV D + G P+ + F+ + + E+ +A ++ Sbjct: 1593 RYSSLFGYDITVLQLFVECLD--LWGKPNRK----FFQEFYRYCSNPEEKIQA-----KK 1641 Query: 544 WARSQNGNLLVEFSSRDGEIESILK 618 WA+++ L+ EFSS+ G + K Sbjct: 1642 WAQNEGKKLIEEFSSKTGTYLDVFK 1666
>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 29.3 bits (64), Expect = 9.8 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Frame = +1 Query: 19 GGVDHPPPXP----VRXAGSSPRXSPMAAISSLPFAALR--RAADWRPSTATAA 162 GG D PPP P + S PR +P ++ A R AA W P TA+ Sbjct: 1245 GGWDFPPPAPTSRSLEDLSSCPRAAPTRRLTGPSRHARRCPHAAHWGPPLPTAS 1298
>PSAF_CHLRE (P12356) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) (P21 protein) Length = 227 Score = 29.3 bits (64), Expect = 9.8 Identities = 19/67 (28%), Positives = 30/67 (44%) Frame = -3 Query: 248 SPAVMTQRTTEREPRRALALSMTPPETLTAAVAVDGLQSAARRSAANGSDDMAAMGEXLG 69 +PAV RRAL ++ + TA+ L ++A +A + S AAM + G Sbjct: 7 NPAVKASSRVAPSSRRALRVACQAQKNETASKVGTALAASALAAAVSLSAPSAAMADIAG 66 Query: 68 LLPAXRT 48 L P + Sbjct: 67 LTPCSES 73
>FUT6_ARATH (Q9XI80) Fucosyltransferase 6 (EC 2.4.1.-) (AtFUT6)| Length = 537 Score = 29.3 bits (64), Expect = 9.8 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = -1 Query: 547 PTLPSFVHQPCIAQDLHLTPLHMT*RWHPCPRCWGT 440 PT P+ PCI Q + P H+T H C WGT Sbjct: 477 PTGPTAPDPPCI-QSTSMDPCHLTPPSHGCEPEWGT 511
>PSN_DROME (O02194) Presenilin homolog (EC 3.4.23.-) (dPS) (DmPS)| Length = 541 Score = 29.3 bits (64), Expect = 9.8 Identities = 17/44 (38%), Positives = 21/44 (47%) Frame = +1 Query: 61 GSSPRXSPMAAISSLPFAALRRAADWRPSTATAAVSVSGGVMLN 192 GSS + P AAI ++P +R RPS T SGG N Sbjct: 46 GSSNQDQPDAAILAVPNVVMREPCGSRPSRLTGGGGGSGGPPTN 89 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.133 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,737,494 Number of Sequences: 219361 Number of extensions: 1926033 Number of successful extensions: 6308 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 6008 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6305 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
