No.
Definition
Score (bits)
E Value
1 ref|XM_475203.1| Oryza sativa (japonica cultivar-group), predic...
624
e-176
2 dbj|AK067298.1| Oryza sativa (japonica cultivar-group) cDNA clon...
624
e-176
3 gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome...
204
3e-49
4 gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome...
204
3e-49
5 dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...
204
3e-49
6 ref|NM_128710.2| Arabidopsis thaliana EMB2289; protein transloca...
94
7e-16
7 emb|BX820289.1|CNS0A8QZ Arabidopsis thaliana Full-length cDNA Co...
88
4e-14
8 gb|AY062590.1| Arabidopsis thaliana putative preprotein transloc...
66
2e-07
9 gb|AC007071.7| Arabidopsis thaliana chromosome 2 clone T9H9 map ...
64
6e-07
10 ref|XM_368718.1| Magnaporthe grisea 70-15 chromosome VI hypothet...
44
0.57
11 gb|AC083799.17| Homo sapiens 3 BAC RP11-332M2 (Roswell Park Canc...
44
0.57
12 gb|AC113204.7| Mus musculus chromosome 12, clone RP23-312J1, com...
42
2.3
13 gb|AC084780.10| Mus musculus chromosome 5, clone RP23-212N20, co...
40
8.9
14 gb|AC122915.2| Mus musculus BAC clone RP23-27G7 from 5, complete...
40
8.9
15 gb|AC110980.6| Rattus norvegicus 4 BAC CH230-94D15 (Children's H...
40
8.9
16 emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on ch...
40
8.9
17 emb|AL008728.1|HS125N5 Human DNA sequence from clone RP1-125N5 o...
40
8.9
18 gb|AC159882.2| Mus musculus BAC clone RP24-480A4 from chromosome...
40
8.9
19 emb|AL663083.5| Mouse DNA sequence from clone RP23-280G3 on chro...
40
8.9
20 gb|AC123594.1| Oryza sativa (japonica cultivar-group) chromosome...
40
8.9
21 gb|AC011118.13| Homo sapiens chromosome 8, clone RP11-163D8, com...
40
8.9
22 gb|AC104358.4| Homo sapiens chromosome 8, clone RP11-151L10, com...
40
8.9
23 dbj|AK147615.1| Mus musculus adult male brain UNDEFINED_CELL_LIN...
40
8.9
24 dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D...
40
8.9
25 dbj|AP002089.2| Homo sapiens genomic DNA, chromosome 8q23, clone...
40
8.9
26 dbj|AP005622.3| Homo sapiens genomic DNA, chromosome 8q23, clone...
40
8.9
27 gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome...
40
8.9
28 gb|AC134918.5| Mus musculus BAC clone RP23-71G16 from 3, complet...
40
8.9
29 gb|AC122217.4| Mus musculus BAC clone RP23-118J3 from 16, comple...
40
8.9
30 dbj|AP003786.2| Homo sapiens genomic DNA, chromosome 8q23, clone...
40
8.9
>gb|AC132492.3 | Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01,
complete sequence
Length = 146303
Score = 204 bits (103), Expect = 3e-49
Identities = 166/188 (88%)
Strand = Plus / Minus
Query: 10 cctggcgcggcttggggccgtggcggnnggcgcggcggnggccttcttccgcagcgaaat 69
|||||||||||| ||||||||||||| ||||||||| ||| ||||||||||||| ||
Sbjct: 12850 cctggcgcggctgggggccgtggcggagagcgcggcggaggcgctcttccgcagcgagat 12791
Query: 70 acggcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcgtcggctacttcgt 129
|| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 12790 tcgccggcggctggccgtcacggccgtgctcatcctgctcagccgcgtcggctacttcgt 12731
Query: 130 gccgcttcctgggttcgaccgccgcctcatccccgactcctatctcagcttcgccccgct 189
|||||||| ||||||||||| || ||||||||||| ||||| |||||||| || || ||
Sbjct: 12730 cccgcttcccgggttcgaccgacggctcatccccgattcctacctcagctttgcacccct 12671
Query: 190 ccctgcag 197
|||||||
Sbjct: 12670 tcctgcag 12663
Score = 117 bits (59), Expect = 5e-23
Identities = 89/99 (89%)
Strand = Plus / Minus
Query: 193 tgcagatgacctcgttgattttgcttctgaactgaagctatcatttttccagctgggaat 252
|||||||||||||| ||||||| | || ||| ||||||| |||||||||||||| |||||
Sbjct: 12532 tgcagatgacctcggtgatttttcatccgaattgaagctgtcatttttccagctcggaat 12473
Query: 253 cagtcatcagatatcagcatcgattgtgatgcaggttct 291
|||||||||||| |||||||| ||||| |||||||||||
Sbjct: 12472 cagtcatcagatttcagcatctattgtcatgcaggttct 12434
Score = 101 bits (51), Expect = 3e-18
Identities = 75/83 (90%)
Strand = Plus / Minus
Query: 551 catggctcatctttgattatctgtgttggaatattgactggttacacaaatacactacac 610
|||||||| || |||||||||||||| ||||||||||||||||| ||| | ||||| |||
Sbjct: 11400 catggctcttccttgattatctgtgtgggaatattgactggttatacagacacactccac 11341
Query: 611 aagatgctaactcaattttcagg 633
|||||| ||||||||||||||||
Sbjct: 11340 aagatgttaactcaattttcagg 11318
Score = 83.8 bits (42), Expect = 7e-13
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 285 aggttctttgccatgttcttccatcacttgaaaagattcgcaaggaaggattagacgggc 344
||||||| || ||||||||||||||||||||||| | || |||||||| ||||| || |
Sbjct: 12214 aggttctctgtcatgttcttccatcacttgaaaaactacgaaaggaagggttagatggac 12155
Query: 345 atgagaagatcaaaagctatat 366
|||||||||||||| |||||||
Sbjct: 12154 atgagaagatcaaaggctatat 12133
Score = 83.8 bits (42), Expect = 7e-13
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 368 tggtggctatcactgggttttgcaattgtggctgcttgtactgtgtcatgctattcgctg 427
|||||||| || |||||||||||| ||||||| |||| ||| ||||||||||| || |||
Sbjct: 12019 tggtggctgtcgctgggttttgcacttgtggcggcttttacagtgtcatgctactcactg 11960
Query: 428 cagtactccatatatgcagcaagttacagg 457
|| || || |||||||| ||||||||||||
Sbjct: 11959 caatattctatatatgctgcaagttacagg 11930
Score = 71.9 bits (36), Expect = 3e-09
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 458 gttaagcatgtcatattaacaagctttctgcttgtcctcggtgcaatgtcaacgacttgg 517
||||||||||| || |||||||| || | ||||| || ||||||||| ||| ||| |||
Sbjct: 11817 gttaagcatgtaatgataacaagccttttccttgttcttggtgcaatgacaatgacatgg 11758
Query: 518 atctgtgacaccataacggaatctggctttgg 549
||||||||||| ||| |||||||||| |||||
Sbjct: 11757 atctgtgacactatatcggaatctggatttgg 11726
>gb|AC134932.2 | Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21,
complete sequence
Length = 151267
Score = 204 bits (103), Expect = 3e-49
Identities = 166/188 (88%)
Strand = Plus / Minus
Query: 10 cctggcgcggcttggggccgtggcggnnggcgcggcggnggccttcttccgcagcgaaat 69
|||||||||||| ||||||||||||| ||||||||| ||| ||||||||||||| ||
Sbjct: 130672 cctggcgcggctgggggccgtggcggagagcgcggcggaggcgctcttccgcagcgagat 130613
Query: 70 acggcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcgtcggctacttcgt 129
|| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 130612 tcgccggcggctggccgtcacggccgtgctcatcctgctcagccgcgtcggctacttcgt 130553
Query: 130 gccgcttcctgggttcgaccgccgcctcatccccgactcctatctcagcttcgccccgct 189
|||||||| ||||||||||| || ||||||||||| ||||| |||||||| || || ||
Sbjct: 130552 cccgcttcccgggttcgaccgacggctcatccccgattcctacctcagctttgcacccct 130493
Query: 190 ccctgcag 197
|||||||
Sbjct: 130492 tcctgcag 130485
Score = 117 bits (59), Expect = 5e-23
Identities = 89/99 (89%)
Strand = Plus / Minus
Query: 193 tgcagatgacctcgttgattttgcttctgaactgaagctatcatttttccagctgggaat 252
|||||||||||||| ||||||| | || ||| ||||||| |||||||||||||| |||||
Sbjct: 130354 tgcagatgacctcggtgatttttcatccgaattgaagctgtcatttttccagctcggaat 130295
Query: 253 cagtcatcagatatcagcatcgattgtgatgcaggttct 291
|||||||||||| |||||||| ||||| |||||||||||
Sbjct: 130294 cagtcatcagatttcagcatctattgtcatgcaggttct 130256
Score = 101 bits (51), Expect = 3e-18
Identities = 75/83 (90%)
Strand = Plus / Minus
Query: 551 catggctcatctttgattatctgtgttggaatattgactggttacacaaatacactacac 610
|||||||| || |||||||||||||| ||||||||||||||||| ||| | ||||| |||
Sbjct: 129222 catggctcttccttgattatctgtgtgggaatattgactggttatacagacacactccac 129163
Query: 611 aagatgctaactcaattttcagg 633
|||||| ||||||||||||||||
Sbjct: 129162 aagatgttaactcaattttcagg 129140
Score = 83.8 bits (42), Expect = 7e-13
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 285 aggttctttgccatgttcttccatcacttgaaaagattcgcaaggaaggattagacgggc 344
||||||| || ||||||||||||||||||||||| | || |||||||| ||||| || |
Sbjct: 130036 aggttctctgtcatgttcttccatcacttgaaaaactacgaaaggaagggttagatggac 129977
Query: 345 atgagaagatcaaaagctatat 366
|||||||||||||| |||||||
Sbjct: 129976 atgagaagatcaaaggctatat 129955
Score = 83.8 bits (42), Expect = 7e-13
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 368 tggtggctatcactgggttttgcaattgtggctgcttgtactgtgtcatgctattcgctg 427
|||||||| || |||||||||||| ||||||| |||| ||| ||||||||||| || |||
Sbjct: 129841 tggtggctgtcgctgggttttgcacttgtggcggcttttacagtgtcatgctactcactg 129782
Query: 428 cagtactccatatatgcagcaagttacagg 457
|| || || |||||||| ||||||||||||
Sbjct: 129781 caatattctatatatgctgcaagttacagg 129752
Score = 71.9 bits (36), Expect = 3e-09
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 458 gttaagcatgtcatattaacaagctttctgcttgtcctcggtgcaatgtcaacgacttgg 517
||||||||||| || |||||||| || | ||||| || ||||||||| ||| ||| |||
Sbjct: 129639 gttaagcatgtaatgataacaagccttttccttgttcttggtgcaatgacaatgacatgg 129580
Query: 518 atctgtgacaccataacggaatctggctttgg 549
||||||||||| ||| |||||||||| |||||
Sbjct: 129579 atctgtgacactatatcggaatctggatttgg 129548
>dbj|AP008211.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 204 bits (103), Expect = 3e-49
Identities = 166/188 (88%)
Strand = Plus / Minus
Query: 10 cctggcgcggcttggggccgtggcggnnggcgcggcggnggccttcttccgcagcgaaat 69
|||||||||||| ||||||||||||| ||||||||| ||| ||||||||||||| ||
Sbjct: 19208774 cctggcgcggctgggggccgtggcggagagcgcggcggaggcgctcttccgcagcgagat 19208715
Query: 70 acggcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcgtcggctacttcgt 129
|| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 19208714 tcgccggcggctggccgtcacggccgtgctcatcctgctcagccgcgtcggctacttcgt 19208655
Query: 130 gccgcttcctgggttcgaccgccgcctcatccccgactcctatctcagcttcgccccgct 189
|||||||| ||||||||||| || ||||||||||| ||||| |||||||| || || ||
Sbjct: 19208654 cccgcttcccgggttcgaccgacggctcatccccgattcctacctcagctttgcacccct 19208595
Query: 190 ccctgcag 197
|||||||
Sbjct: 19208594 tcctgcag 19208587
Score = 117 bits (59), Expect = 5e-23
Identities = 89/99 (89%)
Strand = Plus / Minus
Query: 193 tgcagatgacctcgttgattttgcttctgaactgaagctatcatttttccagctgggaat 252
|||||||||||||| ||||||| | || ||| ||||||| |||||||||||||| |||||
Sbjct: 19208456 tgcagatgacctcggtgatttttcatccgaattgaagctgtcatttttccagctcggaat 19208397
Query: 253 cagtcatcagatatcagcatcgattgtgatgcaggttct 291
|||||||||||| |||||||| ||||| |||||||||||
Sbjct: 19208396 cagtcatcagatttcagcatctattgtcatgcaggttct 19208358
Score = 101 bits (51), Expect = 3e-18
Identities = 75/83 (90%)
Strand = Plus / Minus
Query: 551 catggctcatctttgattatctgtgttggaatattgactggttacacaaatacactacac 610
|||||||| || |||||||||||||| ||||||||||||||||| ||| | ||||| |||
Sbjct: 19207324 catggctcttccttgattatctgtgtgggaatattgactggttatacagacacactccac 19207265
Query: 611 aagatgctaactcaattttcagg 633
|||||| ||||||||||||||||
Sbjct: 19207264 aagatgttaactcaattttcagg 19207242
Score = 83.8 bits (42), Expect = 7e-13
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 285 aggttctttgccatgttcttccatcacttgaaaagattcgcaaggaaggattagacgggc 344
||||||| || ||||||||||||||||||||||| | || |||||||| ||||| || |
Sbjct: 19208138 aggttctctgtcatgttcttccatcacttgaaaaactacgaaaggaagggttagatggac 19208079
Query: 345 atgagaagatcaaaagctatat 366
|||||||||||||| |||||||
Sbjct: 19208078 atgagaagatcaaaggctatat 19208057
Score = 83.8 bits (42), Expect = 7e-13
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 368 tggtggctatcactgggttttgcaattgtggctgcttgtactgtgtcatgctattcgctg 427
|||||||| || |||||||||||| ||||||| |||| ||| ||||||||||| || |||
Sbjct: 19207943 tggtggctgtcgctgggttttgcacttgtggcggcttttacagtgtcatgctactcactg 19207884
Query: 428 cagtactccatatatgcagcaagttacagg 457
|| || || |||||||| ||||||||||||
Sbjct: 19207883 caatattctatatatgctgcaagttacagg 19207854
Score = 71.9 bits (36), Expect = 3e-09
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 458 gttaagcatgtcatattaacaagctttctgcttgtcctcggtgcaatgtcaacgacttgg 517
||||||||||| || |||||||| || | ||||| || ||||||||| ||| ||| |||
Sbjct: 19207741 gttaagcatgtaatgataacaagccttttccttgttcttggtgcaatgacaatgacatgg 19207682
Query: 518 atctgtgacaccataacggaatctggctttgg 549
||||||||||| ||| |||||||||| |||||
Sbjct: 19207681 atctgtgacactatatcggaatctggatttgg 19207650
>dbj|AP003786.2 | Homo sapiens genomic DNA, chromosome 8q23, clone:KB1018C4, complete
sequence
Length = 174667
Score = 40.1 bits (20), Expect = 8.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 283 gcaggttctttgccatgttc 302
||||||||||||||||||||
Sbjct: 2336 gcaggttctttgccatgttc 2317
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,247,549
Number of Sequences: 3902068
Number of extensions: 5247549
Number of successful extensions: 98817
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98650
Number of HSP's gapped (non-prelim): 167
length of query: 652
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 629
effective length of database: 17,143,297,704
effective search space: 10783134255816
effective search space used: 10783134255816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)