ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baali18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MOAC_STAS1 (Q49ZJ2) Molybdenum cofactor biosynthesis protein C 32 1.2
2PLSI_HUMAN (Q14651) Plastin-1 (I-plastin) (Intestine-specific pl... 32 1.6
3NUMA1_HUMAN (Q14980) Nuclear mitotic apparatus protein 1 (NuMA p... 32 1.6
4ARGC2_DEIRA (Q9RY72) N-acetyl-gamma-glutamyl-phosphate reductase... 30 4.6
5RS10_CHLPN (Q9Z803) 30S ribosomal protein S10 30 4.6
6REN3A_HUMAN (Q9H1J1) Regulator of nonsense transcripts 3A (Nonse... 29 7.8
7FETP_PSEPK (Q88R49) Probable Fe(2+) trafficking protein 29 7.8

>MOAC_STAS1 (Q49ZJ2) Molybdenum cofactor biosynthesis protein C|
          Length = 162

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +2

Query: 224 AKSLAVVVP*CTKLPSATALKTFDQLEAQRSFLLHIQT 337
           AK+ A ++P C +LP      TFD  E ++S+ L+IQT
Sbjct: 66  AKNTADIIPMCHQLPLTGIDVTFDWQENEQSYTLNIQT 103



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>PLSI_HUMAN (Q14651) Plastin-1 (I-plastin) (Intestine-specific plastin)|
          Length = 629

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = -1

Query: 469 NWSIIVKQQAREIGGRKESE*NCIKILNYGKGKAKNDIRMASSRSLNMQQKTSLRLQLVE 290
           NWS + K     +GG  +   NC   +  GK KAK  +   + + LN ++ ++L L LV 
Sbjct: 439 NWSHVNKPPYPALGGNMKKIENCNYAVELGKNKAKFSLVGIAGQDLN-ERNSTLTLALVW 497

Query: 289 RL 284
           +L
Sbjct: 498 QL 499



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>NUMA1_HUMAN (Q14980) Nuclear mitotic apparatus protein 1 (NuMA protein) (SP-H|
            antigen)
          Length = 2115

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
 Frame = -1

Query: 520  SLSQKAEQRGTEGERLENWSIIVKQQAREIGGRKESE*NCIKILNYGKGKAKNDIRM--A 347
            ++ ++AEQ G E ERL    +  + Q +E  G++E E   +  L   +G+A+ D+ +  A
Sbjct: 969  AMEREAEQMGNELERLRAALMESQGQQQEERGQQERE---VARLTQERGRAQADLALEKA 1025

Query: 346  SSRSLNMQQKTSLRLQLVE 290
            +   L M+ + +L  Q VE
Sbjct: 1026 ARAELEMRLQNALNEQRVE 1044



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>ARGC2_DEIRA (Q9RY72) N-acetyl-gamma-glutamyl-phosphate reductase 2 (EC|
           1.2.1.38) (AGPR 2) (N-acetyl-glutamate semialdehyde
           dehydrogenase 2) (NAGSA dehydrogenase 2)
          Length = 306

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = +2

Query: 314 SFLLHIQTARRSHPDIVFGFP 376
           S LL   TA R HPD VFGFP
Sbjct: 76  SRLLDASTAHRIHPDWVFGFP 96



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>RS10_CHLPN (Q9Z803) 30S ribosomal protein S10|
          Length = 105

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 281 LKTFDQLEAQRSFLLHIQTARRSHPDIVFGFPLPVV*DFYAIL 409
           LK FDQ +  RS    ++TA+R+   +V   PLP   + Y +L
Sbjct: 12  LKGFDQGQLDRSTADIVETAKRTGARVVGPIPLPTKREVYTVL 54



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>REN3A_HUMAN (Q9H1J1) Regulator of nonsense transcripts 3A (Nonsense mRNA|
           reducing factor 3A) (Up-frameshift suppressor 3 homolog
           A) (hUpf3)
          Length = 476

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 21/60 (35%), Positives = 27/60 (45%)
 Frame = -3

Query: 557 QTRSQRSGRPLLQFESESRAERNRGRETRELVDYREAASQRDWWEKRVRIKLHKNPKLRE 378
           + R +R  R L +     R E  R R   E    +E   Q+   EK VRIKL K P+  E
Sbjct: 234 EKREERRRRELEK--KRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIKLLKKPEKGE 291



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>FETP_PSEPK (Q88R49) Probable Fe(2+) trafficking protein|
          Length = 90

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
 Frame = -3

Query: 461 DYREAASQRDW--WEKRVRIKLH-KNPKLREGESQKRYQ---DGFFAQFEYAAENFFAPP 300
           D  E  SQ+ W  W+K   + ++ K   +   E +K  Q   D FFA  EYA    + PP
Sbjct: 29  DIFEHISQKAWADWQKHQTMLINEKRLNMMNAEDRKFLQAEMDKFFAGEEYAQAEGYVPP 88

Query: 299 A 297
           A
Sbjct: 89  A 89


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,834,676
Number of Sequences: 219361
Number of extensions: 1349538
Number of successful extensions: 3672
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3672
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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